WO1991006678A1 - Dna sequencing - Google Patents
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- WO1991006678A1 WO1991006678A1 PCT/US1990/006178 US9006178W WO9106678A1 WO 1991006678 A1 WO1991006678 A1 WO 1991006678A1 US 9006178 W US9006178 W US 9006178W WO 9106678 A1 WO9106678 A1 WO 9106678A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
Definitions
- This invention relates to DNA sequencing. More particularly, it relates to methods and apparatus for determining the sequence of deoxyribonucleotides within DNA molecules .
- DNA sequencing is an important tool.
- a current goal of the biological community in general is the determination of the complete structure of the DNA of a number of organisms, including man. This information will aid in the understanding, diagnosis, prevention and treatment of disease.
- the DNA to be sequenced is enzymatically copied by the Klenow fragment of DNA polymerase I or by a similar polymerase enzyme such as Taq polymerase or SequenaseTM .
- the enzymatic copying is carried out in quadruplicate.
- a low concentration of a chain terminating dideoxynucleotide is present, a different dideoxynucleotide being present in each of the four reactions (ddATP, ddCTP, ddGTP and ddTTP) .
- the polymerase reaction is terminated, again producing sets of nested fragments. Again, the nested fragments have to be separated from one another by electrophoresis to determine the sequence.
- the present invention provides methods and apparatus for determining the sequence of deoxyribonucleotides in a DNA molecule.
- a key characteristic of this invention is that it determines the DNA sequence without recourse to electrophoresis or other size-based separation techniques.
- the present invention provides a method for determining the deoxyribonucleotide sequence, of a single stranded DNA subject molecule.
- This method involves synthesizing, in the presence of a multitude of identical copies of the subject DNA, the DNA molecule which is complementary to it.
- This synthesis is carried out using deoxyribonucleotide triphosphates (dNTP) in a stepwise serial manner so as to simultaneously build Up numerous copies of the complementary molecule, dNTP by dNTP.
- dNTP deoxyribonucleotide triphosphates
- this invention provides apparatus for carrying out the above-described method.
- this method and apparatus for carrying it out can take many different configurations.
- This invention can be carried out in a single reaction zone with multiple differentiable reporters or in multiple reaction zones with a single reporter in each zone. It can be carried out by detecting the incremental signal change after addition of reporters or by noting each added reporter separately. The various reporters can be measured in the reaction zones while attached to the growing molecule or they can be separated from the molecule and then measured.
- the invention can be practiced to create the growing complementary DNA chain without interruption or it can be practiced in stages wherein a portion of the complementary chain is created and its sequence determined; this portion of the chain is then removed; a sequence corresponding to a region of the removed chain is separately synthesized and used to prime the template chain for subsequent chain growth. The latter method can be repeated as needed to grow out in portions the complete complementary chain.
- Figures 1A and IB are schematic diagrams of the process of this invention on a molecular level.
- Figure 2 is a schematic representation of one form of apparatus for practising the invention.
- the DNA growth takes place in a single reaction zone.
- This embodiment uses separate, distinguishable reporters associated with each of the four nucleotides incorporated into the growing molecule. The four different reporters are measured after each addition to detect which base has just been added to that position of the complementary chain.
- Figure 3 is a schematic representation of another form of apparatus for practising the invention.
- This embodiment employs four reaction zones in which the molecular growth is carried out in quadruplicate. In each of the four zones, a different one of the four nucleotides is associated with a reporter (with the remaining three being unlabeled) so that the identity of the nucleotide incorporated at each stage can be determined.
- Figure 4 is a schematic representation of an adoption of the apparatus for practising the invention particularly adapted for carrying out the invention to grow a series of portions of the complementary molecule as opposed to a single continuous complementary molecule.
- Figures 5 through 8 are pictorial representations of chemical reaction sequences which can be used to synthesize representative labeled nucleotide building blocks for use in the practice of this invention.
- dNTPs of these materials are abbreviated as dATP, dCTP, dGTP and dTTP. When these materials are blocked in their 3'-OH position they are shown as 3 'blockeddATP, 3'blockeddCTP, 3 'blockeddGTP and 3 'bl ⁇ ckeddTTP. Similarly, when they are each tagged or labeled with a common reporter group, such as a single fluorescent group, they are represented as dA'TP, dC'TP, dG'TP and dT'TP.
- a solid support 1 is illustrated with a reactive group A attached to its surface via tether 2. This attachment can be covalent, ionic or the like.
- a second reactive group. X capable of bonding to group A, again via a covalent, ionic or the like bond, is attached to the 5' end of a DNA primer 4.
- This primer has a known DNA sequence. When coupled to the substrate via the A-X bond it forms immobilized primer 5.
- Primer 5 is then hybridized to template DNA strand 6 which is made up of an unknown region 7 inserted between regions 8 and 8 ' . Regions 8 and 8' are located at the 5' and 3' ends of the unknown region and have known sequences.
- the 8' region's known sequence is complementary to the sequence of primer 4 so that those regions hybridize to form immobilized template DNA 9. Therefore the individual dNTPs are serially added to form the DNA sequence complementary to the unknown region of the template. 11 and 12 represent the first two such dNTPs incorporated into the growing molecule. These in turn provide the identity of their complements 11' and 12' respectively. This growth continues until the entire complementary DNA molecule has been constructed. Completion can be noted by identifying the sequence corresponding to the 8 region of template 6. Turning to Figure IB, a variation of this chemistry is shown in that the template 6* carries the reactive group X which bonds to the substrate via the A-X bond to form an immobilized template 5*.
- Device 13 for carrying out the invention is shown schematically.
- Device 13 includes a reaction zone 14 which carries inside it a surface 15.
- a plurality of copies of a subject primed single stranded DNA are immobilized on this surface 15. This is the strand of DNA for which the sequence is desired.
- the immobilized DNA is depicted fancifully on surface 15 as if it were present as a series of separately visible attached strands. As will be appreciated, this is not in fact the case and is only done to guide the reader as to the location of the DNA strands .
- the reaction zone 14 may be configured to permit direct reading of reporter signals emanating from within. Examples of this configuration include equipping the reaction zone to permit measuring fluorescence or luminescence through one or more transparent walls or detecting radionuclide decay.
- Reaction zone 14 is fitted with inlet 16 for the addition of polymerase or another suitable enzyme capable of moderating the templat ⁇ e-directing coupling of nucleotides to one another.
- the reaction zone is ⁇ also accessed by inlet lines, 18a-18d for four differently labeled blocked dNTPs, that is 3'blockeddA'TP, 3 'blockeddC' 'TP, 3 'blockeddG' ' 'TP, and 3'blockeddT' ' ' 'TP. These materials can be added in four separate lines, as shown, or can be premixed, if desired, and added via a single line. Buffer and other suitable reaction medium components are added via line 20.
- the polymerase and the four labeled dNTPs are added to the reaction zone 14 under conditions adequate to permit the enzyme to bring about addition of the one, and only the one, of the four labeled blocked dNTPs which is complementary to the first available template nucleotide following the primer.
- the blocking group present on the 3 '-hydroxyl position of the added dNTP prevents inadvertent multiple additions .
- the liquid in reaction zone 14 is drained through line 22 either to waste, or if desired to storage for reuse.
- the reaction zone and the surface 15 are rinsed as appropriate to remove unreacted, uncoupled labeled blocked dNTPs.
- the first member of the complementary chain is now in place associated with the subject chain attached to surface 15.
- the identity of this first nucleotide can be determined by detecting and identifying the label attached to it.
- This detection and identification can be carried out in the case of a fluorescent label by irradiating the surface with a fluorescence-exciting beam from light source 24 and detecting the resulting fluorescence with detector 26.
- the detected florescence is then correlated to the fluorescence properties of the four different labels present on the four different deoxynucleotide triphosphates to identify exactly which one of the four materials was incorporated at the first position of the complementary chain. This identity is then noted.
- a reaction is carried out to remove the blocking group and label from the 3' position on the first deoxynucleotide triphosphate.
- This reaction is carried out in reaction zone 14.
- a deblocking solution is added via line 28 to remove the 3' hydroxyl labeled blocking group. This then generates an active 3' hydroxyl position on the first nucleotide present in the complementary chain and makes it available for coupling to the 5' position of the second nucleotide.
- removal of the deblocking solution via line 22 and rinsing as needed the four blocked, labeled deoxynucleotide triphosphates, buffer and polymerase are again added and the appropriate second member is then coupled into the growing complementary chain.
- the second member of the chain can be identified based on its label. This process is then repeated as needed until the complementary chain has been completed.
- the sequence of incorporated deoxynucleotides is known, and therefore so is the sequence of the complement which is the subject chain. It will be appreciated that this process is easily automated. It is a series of fluid additions and removals from a reaction zone. This can be easily accomplished by a series of timer-controlled valves and the like. This technology has been well developed in the area of oligonucleotide synthesizers, peptide synthesizers, and the like. In such an automated system, the timing can be controlled by a microprocessor or, in most cases, by a simple programmable timer. The rate and " extent of reaction can be monitored by measurement of the reporter concentration at various stages .
- the labels present in the blocked dNTPs can be incorporated in one of several manners. For one, they can be incorporated directly and irremovably in the deoxynucleotide triphosphate unit itself. Thus, as the complementary chain grows there is a summing of signals and one identifies each added nucleotide by noting the change in signal observed after each nucleotide is added.
- the label is incorporated within the blocking group or is otherwise incorporated in a way which allows it to be removed between each addition. This permits the detection to be substantially simpler in that one is noting the presence of one of the four reporter groups after each addition rather than a change in the sum of a group of reporter groups .
- the presence of reporter signal is noted directly in the reaction zone 14 by the analytical system noted as source 24 and detector 26. It will be appreciated, however, that in embodiments where the reporter group is removed during each cycle, it is possible to read or detect the reporter at a remote site after it has been carried out of the reaction zone 14.
- drain line 22 could be valved to a sample collector (not shown) which would isolate and store the individual delabeling product solutions for subsequent reading.
- the various removed labels could be read as they flowed out of the reaction zone by equipping line 22 with an in-line measurement cell such as source 24' and detector 26' or the like.
- a second embodiment of this invention employs four separate parallel reaction zones. This method has the advantage of requiring only one type of labeling and being able to use it with all four dNTPs.
- Figure 3 shows a schematic representation of a device 30 which has the four reaction zone configuration. In this configuration there are four reaction zones 32a through 32d, each of which resembles the reaction zone 14 in Figure 2. In these cases each of the four reaction zones contains a surface 34a-d to which is immobilized numerous copies of a primed subject single stranded DNA. Each reaction zone is supplied with polymerase via lines 36a-d. Each zone is supplied with suitable reaction medium via lines 38a-38d. The four dNTPs are supplied in blocked form to each zone, as well.
- zone 32a one of the blocked dNTPs is labeled, for example "A'"; in zone 32b a second dNTP is labeled, for example "C”; in zone 32c a third dNTP is labeled, for example "G'”; and in 32d the fourth labeled dNTP "T' M is present.
- These labeled materials are supplied via lines 40a through 40d respectively.
- Unlabeled blocked dNTPs are supplied via lines 42a-d so that each of the four reaction zones contains three unlabeled blocked dNTPs and one labeled blocked dNTP.
- the various labeled and unlabeled dNTP ' s can be premixed. These premixed materials can be added to the various reaction zones via single addition lines.
- the single stranded DNA hybridized to a primer and attached to each of surfaces 34a-34d is contacted with polymerase (supplied via lines 36a-36d), buffer (supplied via lines 38a-38d) and the four bases in each of the four reaction zones .
- the blocked dNTP which complements the first base on the subject chain couples.
- this base is labeled.
- this label is incorporated into the growing chain, one can determine the identity of the dNTP which is incorporated at the first position. This determination of the identity of the first unit of the chain can be carried out using signal sources and detectors such as 44a-44d and 46a-46d, respectively.
- Deblocking is carried out by adding deblocking solution to the reaction zone through lines 48a-48d.
- Lines 50a-50d are drain lines for removing material from the reaction zones following each step.
- all of the variations noted with reference to the device described in Figure 2 can also be used including cumulating reporter signals and generating reporter signals away from the reaction zone by removing the reporter groups as part of each of the sequential couplings.
- this embodiment can be readily automated, as well.
- One obvious potential shortcoming of the present invention is that it employs a long sequence of serial reactions. Even if the efficiency and yield of each of these reactions are relatively high, the overall yield becomes the product of a large number of numbers, each of which is somewhat less than 1.00, and thus can become unacceptably low. For example if the yield of a given addition step is 98% and the deblocking is 98% as well, the overall yield after 15 additions is 48 , after 30 additions it is 23% and after 60 additions it is 5.3%.
- This limitation can be alleviated by periodically halting the DNA molecule growth and using the sequence data obtained prior to halting the growth to externally recreate a portion of the molecule which can then be used as a primer for renewed DNA fabrication. This process is illustrated in Figure 4.
- FIG 4 shows a schematic of an automated sequencer 52 employing the present invention.
- Sequencer 52 has a single reaction zone 14 combining the subject primed DNA, immobilized therein such as on surface 15.
- the four 3-blocked DNTP's are fed to the reaction zone through line 18.
- Polymerase and buffers are added via lines 16 and 20, respectively.
- the dNTP 's, polymerase and buffer can be recycled from step to step via lines 54 and 56 and holding vessel 58. All of the valves admitting and removing fluids from reaction zone 14 can be controlled by central computer 60 which functions as a valve control clock.
- This computer 60 can also control the addition of deblocker from line 28, deblocking eluent with cleaved labels (as obtained when the label is present in the blocking group) is removed via line 22 and detected via detector system 24/26 reading label values in detector vessel 62.
- This embodiment illustrates the use of a fluorescent label system and shows the addition of fluorescent sensitizer (flooder) via line 64 to the fluorescent detection zone 62.
- the deblocking solution and detected label are discarded via line 66.
- the signal presented by the label identified by detector 26 is passed to analog/digital converter 68 and therein to a memory in central computer 60 where it is stored.
- the memory in computer 60 contains the sequence of an initial portion of the complementary DNA molecule which has been constructed in association with the subject or target DNA molecule contained within reactor 14. After some number of units have been assembled - typically 25 to 300, or more; preferably 50 to 300, or more; and more preferably 100 to 300, or more - the growing complementary DNA molecule is stripped from the immobilized subject DNA molecule and discarded. This stripping (denaturing) can be done by art-known methods such as by warming the reaction zone to 75°C or higher (preferably 90-95°C) for a few (1-15) minutes.
- the sequence information stored in computer 60 is used to drive DNA synthesizer 70 to externally create a new DNA primer corresponding to at least a portion of the discarded DNA molecule. (The sequence can also be read on printer 72, if desired.)
- This newly constructed DNA primer molecule is fed through line 74 to reaction zone 14 under hybridization conditions so as to join to the complementary region of the subject DNA molecule as a new primer.
- the length of the primer must be adequate to. unambiguously and strongly hybridize with a single region of the subject DNA. As is known in the hybridization art, this can depend upon factors such as the sequence, environmental conditions, and the length of the subject DNA. For efficiency of operation, the primer should ideally be as short as possible.
- Primer lengths typically range from about 10 bases to about 30 bases, although shorter primers would certainly be attractive if they met the above criteria, and longer primers could be used albeit with an increase in cost and time. Good results generally are achieved with primers from 12 to 20 bases long. This gives the molecular growth reaction a "new start" with a large number of properly primed identical molecules. This allows a strong signal to be generated when the next dNTP is coupled.
- the coupling process employed in this invention to incorporate each of the blocked deoxynucleotide triphosphates into the growing complementary chain is an enzyme moderated process.
- Each member of the complementary DNA chain is added using a suitable template-dependent enzyme.
- One enzyme which can be used is Sequenase TM enzyme (an enzyme derived from bacteriophage 7 DNA polymerase that is modified to improve its sequencing properties - see Tabor and
- Sequenase TM examples include but are not limited to
- the coupling conditions which are employed are those known in the art for these enzymes.
- these include temperatures in the range of from about room temperature to about 45 C; a buffer of pH 7 to 8 and preferably pH 7.3 to 7.7; an enzyme concentration of from about 0.01 units per microliter to about 1 unit per microliter and a reaction time of from about 1 to about 20 minutes and preferable 1 to 5 minutes.
- a typical buffer for use with Sequenase TM is made up of
- these typical conditions include temperatures in the range of from about 10 C to about 45 C and preferably from about 15°C to about 40°C; a buffer of pH 6.8 to 7.4 and preferably pH 7.0 to 7.4; an enzyme concentration of from about 0.01 units per microliter to about 1 unit per microliter and preferably from about 0.02 to about 0.15 units per microliter and a reaction time of from about 1 to about 40 minutes.
- a typical buffer for use with Klenow fragment of DNA polymerase I is made up of
- 3 '-blocking groups include: (l) the ability of a polymerase enzyme to accurately and efficiently incorporate the dNTPs carrying the 3 '-blocking groups into the cDNA chain,
- the 3 '-blocking group carries a reporter group, it is desirable that the reporter permit sensitive detection either when part of the cDNA chain before deblocking or subsequent to deblocking in the reaction eluant.
- 3 '-blocked dNTPs are used that can be incorporated in a template-dependent fashion and easily deblocked to yield a viable 3 ' -OH terminus.
- the most common 3 '-hydroxyl blocking groups are esters and ethers.
- ester blocking groups such as lower (1-4 carbon) alkanoic acid and substituted lower alkanoic acid esters, for example formyl, acetyl, isopropanoyl, alpha fluoro- and alpha chloroacetyl esters and the like; ether blocking groups such as alkyl ethers; phosphate blocking groups; carbonate blocking groups such as 2-nitrobenzyl; 2,4-dinitrobenzene-sulfenyl and tetrahydrothiofuranyl ether blocking groups.
- Blocking groups can be modified to incorporate reporter moieties, if desired, including radiolabels (tritium, C 14 or F ⁇ ** 2 , for example), enzymes, fluorophores and chromophores .
- selectively-removable amine protection groups include carbamate ⁇ cleavable by acid hydrolysis [t-butyl, 2-(biphenyl)isopropyl] and certain amides susceptible to acid cleavage (formamide, trichloroacetamide) (Greene, 1981) .
- nucleotide derivatives protection of the primary amino groups is performed prior to phosphonation.
- standard amino protecting groups cleavable by ammonolysis may be used.
- the sequencing scheme After successfully incorporating a 3 '-blocked nucleotide into the DNA chain, the sequencing scheme requires the blocking group to be removed to yield a viable 3 '-OH site for continued chain synthesis.
- the deblocking method should:
- the exact deblocking chemistry selected will, of course, depend to a large extent upon the blocking group employed. For example, removal of ester blocking groups from the 3 'hydroxyl function is usually achieved by base hydrolysis. The ease of removal varies widely; generally, the greater the electro-negativity of substituents on the carbonyl carbon, the greater the ease of removal. For example, the highly electronegative group trifluoroacetate is cleaved rapidly from 3' hydroxyls in methanol at pH 7 (Cramer et al. , 1963) and thus would not be stable during coupling at that pH.
- Phenoxyacetate groups are cleaved in less than one minute but require substantially higher pH such as is achieved with NH-/ methanol (Reese and Steward, 1968).
- the ester deblocking rate is advantageously selected so as to exhibit a deblocking rate of less than 10 -3s-1 during the incorporation, and at least 10 ⁇ s during the deblocking stage. Ideally, this rate change is achieved by changing the buffer pH from 7 to about 10, but care must be taken not to denature the DNA.
- hydroxyl blocking groups are cleaved selectively using chemical procedures other than base hydrolysis.
- 2,4-Dinitrobenzenesulfenyl groups are cleaved rapidly by treatment with nucleophiles such as thiophenol and thiosulfate (Letsinger et al., 1964).
- Allyl ethers are cleaved by treatment with Hg(II) in acetone/water (Gigg and Warren, 1968) .
- Tetrahydrothiofuranyl ethers are removed under neutral conditions using Ag(I) or Hg(II) (Cohen and Steele, 1966; Cruse et al . , 1978).
- These protecting groups which are stable to the conditions used in the synthesis of dNTP analogues and in the sequence incorporation steps, have some advantages over groups cleavable by base hydrolysis - deblocking occurs only when the specific deblocking reagent is present and premature deblocking during incorporation is minimized.
- Photochemical deblocking can be used with photochemically-cleavable blocking groups.
- Several blocking groups are available for such an approach.
- the use of o-nitrobenzylethers as protecting groups for 2 '-hydroxyl functions of ribonucleosides is known and demonstrated (Ohtsuka et al. , 1978); removal occurs by irradiation at 260 nm.
- Alkyl o-nitrobenzyl carbonate protecting groups are also cleaved by irradiation at pH 7 (Cama and Christensen, 1978).
- Enzymatic deblocking of 3 '-OH blocking groups is also possible. It has been demonstrated that T4 polynucleotide kinase can convert 3 '-phosphate termini to 3 '-hydroxyl termini that can then serve as primers for DNA polymerase I (Henner et al . , 1983). This 3 '-phosphatase activity is used to remove the 3 '-blocking group of those dNTP analogues that contain a phosphate as the blocking group; the radioactive label enables the incorporation of the nucleotide analogue and the removal of the phosphate group to be followed easily. . If the use of radioisotopes represents too great a drawback, it is possible to use unlabeled phosphate monoesters with a cleavable fluorescent label (see below).
- each dNTP into the complementary chain is noted by detecting a label or reporter group present in or associated with the incorporated dNTP.
- the labels or markers are "innocuous".
- An "innocuous marker or label or reporter” refers to a radioactive, fluorescent, or the like marker or reporter which has physical and chemical properties which do not interfere with either the enzymatic addition of the marked nucleotide to the cDNA, or the subsequent deblocking to yield a viable 3 '-OH terminus .
- One simple labeling approach is to incorporate a radioactive species within the blocking group or in some other location of the dNTP units. This can be done easily by C 14 labeling or P32 labeling.
- Another labeling approach employs fluorescent labels. These can be attached to the dNTP's via the 3 '0H- blocking groups or attached in other positions. There are two general routes available using fluorescent tags:
- the first route is fairly straightforward and can employ a range of known fluorophores such as rhodamines, fluoresceins and the like, typically including those fluorophores known as useful in labeling dNTP's and the like.
- fluorophores such as rhodamines, fluoresceins and the like, typically including those fluorophores known as useful in labeling dNTP's and the like.
- the second route can employ a fluorophore where only a fragment is attached to the dNTP. This can reduce size and minimize steric interference. In the second route, rapid reaction of a normally nonfluorescent probe or molecule with specific functional group(s) found only on the label fragment leads to the formation of a fluorescent addition product. This leads to a signal only when the particular label
- Blocking groups or other label fragment groups containing free thiol functions can be used for this approach.
- the blocking group or other label fragment can contain a metal-binding ligand, e.g. a carboxylic acid group which will react with added rare earth metal ions such as europium or terbium ions to yield a fluorescent species.
- This dNTP can be incorporated and the fluorescence measured and removed according to the methods described below.
- One method involves the use of a fluorescent tag attached to the base moiety.
- the tag may be chemically cleaved (either separately from or simultaneously with the deblocking step) and measured either in the reaction zone before deblocking or in the reaction eluant after cleavage.
- the fluorescent moiety or other innocuous label can be attached to the dNTP through a spacer or tether.
- the tether can be cleavable if desired to release the fluorophore or other label on demand.
- Typical tethers are from about 2 to about 20, and preferably from about 3 to about 10 atoms in length.
- the C-8 position of the purine structure presents an ideal position for attachment of a label.
- Sarfati et al . (1987) describes a derivatization of deoxyadenosine at C-8 of the purine to prepare, ultimately, an 8-substituted biotin aldylamino dATP.
- the Sarfati et al . (1987) approach can be used to prepare the appropriate fluorescent, rather than biotinylated, analogues.
- a number of approaches are possible to produce fluorescent derivatives of thymidine and deoxycytidine.
- One quite versatile scheme is based on an approach used by Prober et al . (1987) to prepare ddNTPs with fluorescent tags. Structures A, B, C and D below illustrate the type of fluorescent dNTPs that result from these synthetic approaches.
- the synthetic routes have a great flexibility in that the linker can be varied with respect to length or functionality.
- the terminal fluorescent moiety can also be varied according to need.
- the labels so incorporated in the growing cDNA chain are detected by conventional analytical methods .
- increased detection sensitivity is a major advantage of the present method.
- the signal is based on a low level of fluorophores and is superimposed on a background of scatter from the gel and glass plates. This decreases sensitivity and often constrains current methods to the use of laser illumination to maximize sensitivity (Smith et al., 1986; Prober et al . , 1987; Ansorge et al . , 1986) .
- Detection of fluorophores is readily achievable in commercial non-excited spectrofluorometers , such as are sold by Perkin-Elmer.
- LED light- emitting diodes
- Typical LEDs include:
- Red LED emitting at approximately 650 nm
- Green LED emitting at approximately 540 nm
- Blue LED emitting at approximately 450 nm
- the solution containing cleaved blocking groups or nucleotides is directly injected into a field ionization mass spectrometer. Identification of the particular nucleotide incorporated or cleaved is achieved by monitoring the relative abundance of molecular ion peaks corresponding to the specific nucleotides or blocking groups; for example, four distinct acetyl blocking groups differing by one mass unit (replacement of 0 to 3 hydrogens by deuterium) could be detected by monitoring a small “window. "
- Immobilization of Subject DNA In the present invention, single stranded subject DNA or its primer is immobilized.
- One approach to this immobilization is to attach the DNA to a solid substrate.
- DNA and RNA are commonly attached noncovalently through ionic interactions along their length to various types of membranes (Southern, 1975; Maniatis, Fritsch, and Sambrook, 1982; Chuvpilp and Kravchenko, 1984).
- polynucleotides are covalently attached along their length to membranes (Goldberg, et al . , 1979), resins (Seed, 1982; Arndt-Jovin, et al .
- the inner quartz or glass surface can be advantageously functionalized using silanizing reagents such as triethoxysilylpropylamine or dichlorodi ethylsilane. This is followed by covalent attachment of a long-chain alkylamine to these functionalizing groups.
- the single stranded subject DNA is attached to the long chain amine.
- immobilization is carried out by attaching the subject DNA to a plastic surface.
- a thin polypropylene chamber wall designed to pass Cer'enkov radiation from 32P, for example, can serve as a suitable substrate for DNA immobilization.
- a plastic surface it is preferable to use the method of Kremsky et al .
- the reaction zone has one or more openings covered with a membrane such as an ultrafiltration membrane, for example, Amicon's PM-5 or PM-10 membranes which have nominal molecular weight cut offs of 5000 and 10,000 respectively.
- a membrane such as an ultrafiltration membrane, for example, Amicon's PM-5 or PM-10 membranes which have nominal molecular weight cut offs of 5000 and 10,000 respectively.
- the single stranded DNA is suspended in liquid in the reaction zone.
- the labeled and unlabeled dNTPs and other coupling reagents are flowed into the zone. Materials are removed from the zone through such a filter which retains the DNA chains.
- the polymerase or other enzyme which is used to effect coupling is generally of a size to be retained by the membrane. This scheme works for chemical but not enzymatic deblocking, since in enzymatic deblocking the polymerase and phosphatase must be cycled separately through the cell.
- the DNA can be immobilized on particles of resin or polymer microspheres and these particles retained within the chamber.
- the filter material is unimportant as long as the DNA is attached to resin particles which are of a size that cannot penetrate the filter pores .
- oligonucleotides or polynucleotides are linked through their 5' end to cellulose (Gilha , 1968; Clerici et al . 1979), Sephacryl (Langdale and Malcolm, 1985), or latex microspheres (Kremsky et al., 1987).
- the DNA is available for interactions with other nucleic acids or proteins .
- the DNA is coupled covalently to streptavidin-agarose beads by an alkylbiotinylated oligonucleotide (Kremsky et al., 1987).
- the single-stranded DNA is coupled to DBM paper such as a filter in the presence of a protecting strand. After coupling, the protecting strand is released, leaving the immobilized template and priming site free for successive enzymatic reactions (Hansen et al . , 1987) .
- This method and the other single-point methods described above are useful for immobilizing DNA while leaving it free for interactions with enzymes used in DNA sequencing- Examples
- the organic layer is separated and the aqueous layer washed with 2 x 200 ml CH 2 C1 2
- the combined CH-Cl- extracts are dried over magnesium sulfate (MgSO.), filtered and evaporated to dryness under vacuum at room temperature.
- the crude 5 '-dimethoxytrityl-3 'thymidine H-phosphonate II is then treated with 2% benzenesulfonic acid in CH ⁇ Cl- -.methanol (MeOH) (7:3) (200 ml) for one hour.
- the solution is washed with 10% sodium bicarbonate (NaHCO-) and water, dried over magnesium sulfate and evaporated to dryness.
- the crude 3 '-thymidine- H-phosphonate III is recrystallized from ethanol/ether.
- the mixtu-re is stirred for 12 hours at 4 C, neutralized with NaHCO.. solution,- and added to 150 ml water.
- the aqueous solution is washed with benzene (2 x 100 ml) and ether ( 2 x 100 ml), and diluted to 0.8 liters with water and charged on a 2.5 x 50 cm column of DEAE-cellulose.
- the products are eluted using a linear gradient of pH 8.5 ammonium bicarbonate solution (0.05 to 0.25 M) .
- the fractions collected are analyzed by HPLC to determine the desired product-containing fractions, and these are evaporated to dryness under vacuum. The residue is repeatedly re-evaporated with water to remove salts .
- the 5 '-monophosphate IV (16 mmole) is then dissolved in 30 ml of dimethylformamide (DMF) and treated with N,N'-carbonyldiimidazole (30 mmole) at room temperature for one hour.
- the reaction is quenched by addition of 5 ml methanol, and 60 ml of a 0.5M solution of bis (tri-n-butyl-ammonium) pyrophosphate in DMF is added dropwise over 10 minutes.
- the solution is diluted with water to 1 liter and treated with 100 ml of a solution of 0.1 M iodine (I-.) in 5% pyridine/water. After one hour, the solution is deposited on a DEAE-cellulose column from Sigma (5x50cm) or Sephradex from Pharmacia. The column is washed with water and eluted with triethylammonium bicarbonate solution
- the 5 '-triphosphate-3 '-phosphate thymidine product V is obtained by evaporation of the appropriate fractions collected.
- Example 3 Quartz Surface Immobilization of Subject DNA Four 25 microliter volume quartz cuvette reaction chambers are prepared. These chambers are configured like chamber 32 in Figure 3 with the exception that they use their inner walls as the surface to which the DNA is affixed. The inner surfaces are cleaned and dried.
- Triethoxysilylpropylamine (5 microliter in 20 microliter CHC1-.) is added and held at 5°C for 120 minutes under anhydrous conditions . This couples the triethoxysilylpropylamine to the surface and gives an amine character to the surface.
- the subject DNA is then attached to the amine surface.
- This is carried out by first attaching a long chain alkyl amine (n-octylamine) to the base at the 5' end of the subject DNA molecule or to the base at the 5 ' end of a suitable primer, such as an M13 primer for example the 17-mer dGTAAAACGACGGCCAGT, and then joining the alkylamine to the aminopropyl ⁇ ilane surface groups by reaction with glutaraldehyde (1.5 equivalents, 25°C, 120 minutes).
- a suitable primer such as an M13 primer for example the 17-mer dGTAAAACGACGGCCAGT
- Other functional groups pendant to the base moiety or attached to the 5' position can also be used [for example: aldehydes or carboxylic acids (Kremsky et al) ] for covalent immobilization on derivatized quartz or glass surfaces.
- Example 4 Incorporation of Labeled Nucleotide Analogs into DNA
- the 25 microliter reaction zones are charged with a reaction mixture which contains three Units of Sequenase TM enzyme.
- the reaction mixture also contains an appropriate buffer for this enzyme (20 mM Tris-HCl pH 7.5, 10 mM MgCl, 25 mM NaCl, 0.01 M dithiothreitol), the i single-stranded primed subject DNA is present at a concentration of approximately 0.1 M attached to the surface of the reaction chamber at its 5' end, (see Example 3), three unlabeled, 3 '-blocked deoxynucleotide triphosphate (dNTP) analogs at a concentration of 1.5 micromolar each, and one 3 '-blocked, fluorescently labeled dNTP analog of Example 2 at a concentration of 30 micromolar are each present in each of the four reaction zones. In each zone a different one of the four dNTPs is labeled.
- the reaction
- the identity of the added dNTP is determined by exciting the fluorophores present in the one cuvette which incorporated its fluorescently-labeled dNTP.
- the fluorescent group is removed before measurement.
- the 2 ,4-dinitrobenzenesulfenyl fluorescent blocking groups are removed with a deblocking reagent which consists of 0.1 M pyridine/pyridinium chloride buffer (pH 7.8) containing thiourea 0.05 M.
- the deblocking reaction is allowed to proceed for one minute at 40 C-
- the reaction chamber is then drained and washed twice with 100 mM Tris-HCl buffer, pH 6.5.
- the release of the fluorescent blocking group is measured in the initial eluate from the reaction chamber using a flow-through cell. Depending on the cell in which the fluorescent group is present, the identity of the nucleotide which has been added to the DNA chain is determined.
- the blocking group were a dansylcadaverine type ester such as in reaction scheme 4 , it could be removed by treatment with 50% methanol/50% water pH 10.0 for one minute.
- Example 6 Enzymatic Deblocking
- the blocking group can also be removed enzymaticall .
- the deblocker fed into the reaction chamber contains 100 mM Tris-HCl (pH 6.5) 10 mM MgCl-, 5 mM 2-mercaptoethanol, and one Unit T4 polynucleotide kinase.
- the reaction proceeds for one minute at a temperature of 37 C.
- the 3 ' -phosphatase activity of T4 polynucleotide kinase converts 3 '-phosphate termini to 3 '-hydroxyl termini which then serve as primers for further synthesis.
- a simple clock mechanism or microprocessor driven timer circuit can be used to actuate a plurality of electrically controlled valves in. sequence to add the various reagents for adding building blocks, deblocking and the like with the result that the sequence of the target DNA single strand can be obtained with minimum involvement of lab personnel .
Abstract
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Cited By (584)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1992016657A1 (en) * | 1991-03-13 | 1992-10-01 | E.I. Du Pont De Nemours And Company | Method of identifying a nucleotide present at a defined position in a nucleic acid |
EP0514927A1 (en) * | 1991-05-24 | 1992-11-25 | Walter Gilbert | Method and apparatus for rapid nucleic acid sequencing |
WO1993021340A1 (en) * | 1992-04-22 | 1993-10-28 | Medical Research Council | Dna sequencing method |
WO1993023564A1 (en) * | 1992-05-12 | 1993-11-25 | Cemubioteknik Ab | Method of sequencing dna |
FR2703052A1 (en) * | 1993-03-26 | 1994-09-30 | Pasteur Institut | New method of nucleic acid sequencing. |
WO1995009248A1 (en) * | 1993-09-27 | 1995-04-06 | Arch Development Corp. | Methods and compositions for efficient nucleic acid sequencing |
WO1995020053A1 (en) * | 1994-01-21 | 1995-07-27 | Medical Research Council | Sequencing of nucleic acids |
FR2718753A1 (en) * | 1994-04-15 | 1995-10-20 | Pasteur Institut | Determination of the number of oligo:nucleotide repeat units |
US5516633A (en) * | 1991-08-15 | 1996-05-14 | Amersham Life Science, Inc. | DNA sequencing with a T7-type gene 6 exonuclease |
WO1996023807A1 (en) * | 1995-01-31 | 1996-08-08 | Marek Kwiatkowski | Novel chain terminators, the use thereof for nucleic acid sequencing and synthesis and a method of their preparation |
US5547839A (en) * | 1989-06-07 | 1996-08-20 | Affymax Technologies N.V. | Sequencing of surface immobilized polymers utilizing microflourescence detection |
WO1996027025A1 (en) * | 1995-02-27 | 1996-09-06 | Ely Michael Rabani | Device, compounds, algorithms, and methods of molecular characterization and manipulation with molecular parallelism |
EP0745686A1 (en) | 1995-06-01 | 1996-12-04 | Roche Diagnostics GmbH | The use of DNA polymerase 3'-intrinsic editing activity |
EP0745688A1 (en) * | 1995-06-01 | 1996-12-04 | Roche Diagnostics GmbH | The use of DNA polymerase having 3'-intrinsic editing activity |
US5622824A (en) * | 1993-03-19 | 1997-04-22 | Sequenom, Inc. | DNA sequencing by mass spectrometry via exonuclease degradation |
WO1998044151A1 (en) * | 1997-04-01 | 1998-10-08 | Glaxo Group Limited | Method of nucleic acid amplification |
WO1998044152A1 (en) * | 1997-04-01 | 1998-10-08 | Glaxo Group Limited | Method of nucleic acid sequencing |
WO1999005315A2 (en) * | 1997-07-28 | 1999-02-04 | Medical Biosystems Ltd. | Nucleic acid sequence analysis |
WO1999057321A1 (en) * | 1998-05-01 | 1999-11-11 | Arizona Board Of Regents | Method of determining the nucleotide sequence of oligonucleotides and dna molecules |
WO2000053805A1 (en) * | 1999-03-10 | 2000-09-14 | Asm Scientific, Inc. | A method for direct nucleic acid sequencing |
WO2000058507A1 (en) * | 1999-03-30 | 2000-10-05 | Solexa Ltd. | Polynucleotide sequencing |
US6153379A (en) * | 1993-06-22 | 2000-11-28 | Baylor College Of Medicine | Parallel primer extension approach to nucleic acid sequence analysis |
US6194144B1 (en) | 1993-01-07 | 2001-02-27 | Sequenom, Inc. | DNA sequencing by mass spectrometry |
US6210891B1 (en) | 1996-09-27 | 2001-04-03 | Pyrosequencing Ab | Method of sequencing DNA |
WO2001048184A2 (en) * | 1999-12-23 | 2001-07-05 | Axaron Bioscience Ag | Method for carrying out the parallel sequencing of a nucleic acid mixture on a surface |
US6258568B1 (en) | 1996-12-23 | 2001-07-10 | Pyrosequencing Ab | Method of sequencing DNA based on the detection of the release of pyrophosphate and enzymatic nucleotide degradation |
WO2001073121A1 (en) * | 2000-03-30 | 2001-10-04 | Toyota Jidosha Kabushiki Kaisha | Method of determining base sequence of single nucleic acid molecule |
EP1141409A1 (en) * | 1998-12-14 | 2001-10-10 | Li-Cor, Inc. | A system and methods for nucleic acid sequencing of single molecules by polymerase synthesis |
WO2001075154A2 (en) * | 2000-04-03 | 2001-10-11 | Axaron Bioscience Ag | Novel method for the parallel sequencing of a nucleic acid mixture on a surface |
WO2003020895A2 (en) * | 2001-08-28 | 2003-03-13 | Arizona Board Of Regents | Method of determining the nucleotide sequence of oligonucleotides and dna molecules |
EP1337541A2 (en) * | 2000-10-06 | 2003-08-27 | The Trustees of Columbia University in the City of New York | Massive parallel method for decoding DNA and RNA |
US6653082B2 (en) | 2001-05-17 | 2003-11-25 | Baylor College Of Medicine | Substrate-bound cleavage assay for nucleic acid analysis |
US6841128B2 (en) | 2000-03-17 | 2005-01-11 | Hitachi, Ltd. | DNA base sequencing system |
WO2005044836A2 (en) | 2003-11-05 | 2005-05-19 | Genovoxx Gmbh | Macromolecular nucleotide compounds and methods for using the same |
US6908736B1 (en) | 1999-10-06 | 2005-06-21 | Medical Biosystems, Ltd. | DNA sequencing method |
US6951742B1 (en) | 1998-11-16 | 2005-10-04 | Genway Biotech, Inc. | Methods and vectors for generating antibodies in avian species and uses therefor |
US7001722B1 (en) | 1993-06-22 | 2006-02-21 | Baylor College Of Medicine | Parallel primer extension approach to nucleic acid sequence analysis |
US7070927B2 (en) | 1993-09-27 | 2006-07-04 | University Of Chicago | Methods and compositions for efficient nucleic acid sequencing |
US7074597B2 (en) | 2002-07-12 | 2006-07-11 | The Trustees Of Columbia University In The City Of New York | Multiplex genotyping using solid phase capturable dideoxynucleotides and mass spectrometry |
US7133782B2 (en) * | 2000-07-05 | 2006-11-07 | Ge Healthcare Uk Limited | Sequencing method and apparatus |
EP1724348A2 (en) | 1994-10-13 | 2006-11-22 | Solexa, Inc. | Molecular tagging system |
EP1790202A2 (en) * | 2004-09-17 | 2007-05-30 | Pacific Biosciences of California, Inc. | Apparatus and method for analysis of molecules |
EP1844328A2 (en) * | 2005-01-31 | 2007-10-17 | Pacific Biosciences of California, Inc. | Use of reversible extension terminator in nucleic acid sequencing |
US7291460B2 (en) | 2002-05-31 | 2007-11-06 | Verenium Corporation | Multiplexed systems for nucleic acid sequencing |
US7405281B2 (en) | 2005-09-29 | 2008-07-29 | Pacific Biosciences Of California, Inc. | Fluorescent nucleotide analogs and uses therefor |
US7414116B2 (en) | 2002-08-23 | 2008-08-19 | Illumina Cambridge Limited | Labelled nucleotides |
US7427673B2 (en) | 2001-12-04 | 2008-09-23 | Illumina Cambridge Limited | Labelled nucleotides |
EP2003214A2 (en) | 2005-02-01 | 2008-12-17 | AB Advanced Genetic Analysis Corporation | Reagents, methods, and libraries for bead-based sequencing |
US7501245B2 (en) | 1999-06-28 | 2009-03-10 | Helicos Biosciences Corp. | Methods and apparatuses for analyzing polynucleotide sequences |
US7541444B2 (en) | 2002-08-23 | 2009-06-02 | Illumina Cambridge Limited | Modified nucleotides |
US7563574B2 (en) | 2006-03-31 | 2009-07-21 | Pacific Biosciences Of California, Inc. | Methods, systems and compositions for monitoring enzyme activity and applications thereof |
US7592435B2 (en) | 2005-08-19 | 2009-09-22 | Illumina Cambridge Limited | Modified nucleosides and nucleotides and uses thereof |
US7622279B2 (en) | 2004-03-03 | 2009-11-24 | The Trustees Of Columbia University In The City Of New York | Photocleavable fluorescent nucleotides for DNA sequencing on chip constructed by site-specific coupling chemistry |
USRE41005E1 (en) * | 1996-11-06 | 2009-11-24 | Sequenom, Inc. | Beads bound to a solid support and to nucleic acids |
US7626704B2 (en) | 2006-02-13 | 2009-12-01 | Pacific Biosciences Of California, Inc. | Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources |
US7630073B2 (en) | 2006-02-13 | 2009-12-08 | Pacific Biosciences Of California | Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources |
WO2009151921A1 (en) | 2008-05-27 | 2009-12-17 | Trilink Biotechnologies | Chemically modified nucleoside 5'-triphosphates for thermally initiated amplification of nucleic acid |
US7666593B2 (en) | 2005-08-26 | 2010-02-23 | Helicos Biosciences Corporation | Single molecule sequencing of captured nucleic acids |
US7692783B2 (en) | 2006-02-13 | 2010-04-06 | Pacific Biosciences Of California | Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources |
WO2010048337A2 (en) | 2008-10-22 | 2010-04-29 | Illumina, Inc. | Preservation of information related to genomic dna methylation |
WO2010062775A2 (en) | 2008-11-03 | 2010-06-03 | The Regents Of The University Of California | Methods for detecting modification resistant nucleic acids |
US7741463B2 (en) | 2005-11-01 | 2010-06-22 | Illumina Cambridge Limited | Method of preparing libraries of template polynucleotides |
US7763423B2 (en) | 2005-09-30 | 2010-07-27 | Pacific Biosciences Of California, Inc. | Substrates having low density reactive groups for monitoring enzyme activity |
US7772384B2 (en) | 2001-12-04 | 2010-08-10 | Illumina Cambridge Limited | Labelled nucleotides |
US7790418B2 (en) | 2000-12-08 | 2010-09-07 | Illumina Cambridge Limited | Isothermal amplification of nucleic acids on a solid support |
US7805081B2 (en) | 2005-08-11 | 2010-09-28 | Pacific Biosciences Of California, Inc. | Methods and systems for monitoring multiple optical signals from a single source |
EP2233582A1 (en) | 2005-02-01 | 2010-09-29 | AB Advanced Genetic Analysis Corporation | Nucleic acid sequencing by performing successive cycles of duplex extension |
US7820983B2 (en) | 2006-09-01 | 2010-10-26 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
US7875440B2 (en) * | 1998-05-01 | 2011-01-25 | Arizona Board Of Regents | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US7883869B2 (en) | 2006-12-01 | 2011-02-08 | The Trustees Of Columbia University In The City Of New York | Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators |
US7897345B2 (en) | 2003-11-12 | 2011-03-01 | Helicos Biosciences Corporation | Short cycle methods for sequencing polynucleotides |
US7901889B2 (en) | 2007-07-26 | 2011-03-08 | Pacific Biosciences Of California, Inc. | Molecular redundant sequencing |
WO2011050938A1 (en) | 2009-10-26 | 2011-05-05 | Genovoxx Gmbh | Conjugates of nucleotides and method for the application thereof |
US7939264B1 (en) | 1999-10-06 | 2011-05-10 | Gen-Probe Incorporated | DNA sequencing method |
US7960119B2 (en) | 1999-05-20 | 2011-06-14 | Illumina, Inc. | Combinatorial decoding of random nucleic acid arrays |
US7960116B2 (en) | 2007-09-28 | 2011-06-14 | Pacific Biosciences Of California, Inc. | Nucleic acid sequencing methods and systems |
US7981604B2 (en) | 2004-02-19 | 2011-07-19 | California Institute Of Technology | Methods and kits for analyzing polynucleotide sequences |
WO2011093939A1 (en) | 2010-02-01 | 2011-08-04 | Illumina, Inc. | Focusing methods and optical systems and assemblies using the same |
US7993895B2 (en) | 2005-12-02 | 2011-08-09 | Pacific Biosciences Of California, Inc. | Mitigation of photodamage in analytical reactions |
US8003330B2 (en) | 2007-09-28 | 2011-08-23 | Pacific Biosciences Of California, Inc. | Error-free amplification of DNA for clonal sequencing |
US8017338B2 (en) | 2007-11-20 | 2011-09-13 | Life Technologies Corporation | Reversible di-nucleotide terminator sequencing |
WO2011112465A1 (en) | 2010-03-06 | 2011-09-15 | Illumina, Inc. | Systems, methods, and apparatuses for detecting optical signals from a sample |
US8053192B2 (en) | 2007-02-02 | 2011-11-08 | Illumina Cambridge Ltd. | Methods for indexing samples and sequencing multiple polynucleotide templates |
WO2011159942A1 (en) | 2010-06-18 | 2011-12-22 | Illumina, Inc. | Conformational probes and methods for sequencing nucleic acids |
USRE43097E1 (en) | 1994-10-13 | 2012-01-10 | Illumina, Inc. | Massively parallel signature sequencing by ligation of encoded adaptors |
WO2012025250A1 (en) | 2010-08-27 | 2012-03-01 | Illumina Cambridge Ltd. | Methods for paired - end sequencing of polynucleotides |
US8143030B2 (en) | 2008-09-24 | 2012-03-27 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
US8153375B2 (en) | 2008-03-28 | 2012-04-10 | Pacific Biosciences Of California, Inc. | Compositions and methods for nucleic acid sequencing |
WO2012050920A1 (en) | 2010-09-29 | 2012-04-19 | Illumina, Inc. | Compositions and methods for sequencing nucleic acids |
US8168388B2 (en) | 2005-11-25 | 2012-05-01 | Illumina Cambridge Ltd | Preparation of nucleic acid templates for solid phase amplification |
WO2012055929A1 (en) | 2010-10-26 | 2012-05-03 | Illumina, Inc. | Sequencing methods |
WO2012061832A1 (en) | 2010-11-05 | 2012-05-10 | Illumina, Inc. | Linking sequence reads using paired code tags |
WO2012061036A1 (en) | 2010-11-03 | 2012-05-10 | Illumina, Inc. | Reducing adapter dimer formation |
US8182994B2 (en) | 2009-09-15 | 2012-05-22 | Illumina Cambridge Limited | Centroid markers for image analysis of high denisty clusters in complex polynucleotide sequencing |
US8193123B2 (en) | 2006-03-30 | 2012-06-05 | Pacific Biosciences Of California, Inc. | Articles having localized molecules disposed thereon and methods of producing same |
US8198023B2 (en) | 2008-08-05 | 2012-06-12 | Pacific Biosciences Of California, Inc. | Prevention and alleviation of steric hindrance during single molecule nucleic acid synthesis by a polymerase |
US8207509B2 (en) | 2006-09-01 | 2012-06-26 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
WO2012096703A1 (en) | 2011-01-10 | 2012-07-19 | Illumina, Inc. | Systems, methods, and apparatuses to image a sample for biological or chemical analysis |
US8236532B2 (en) | 2008-12-23 | 2012-08-07 | Illumina, Inc. | Multibase delivery for long reads in sequencing by synthesis protocols |
US8236499B2 (en) | 2008-03-28 | 2012-08-07 | Pacific Biosciences Of California, Inc. | Methods and compositions for nucleic acid sample preparation |
WO2012106081A2 (en) | 2011-01-31 | 2012-08-09 | Illumina, Inc. | Methods for reducing nucleic acid damage |
US8252910B2 (en) | 2008-11-19 | 2012-08-28 | Pacific Biosciences Of California, Inc. | Modular nucleotide compositions and uses therefor |
US8252911B2 (en) | 2008-02-12 | 2012-08-28 | Pacific Biosciences Of California, Inc. | Compositions and methods for use in analytical reactions |
US8274040B2 (en) | 2008-09-16 | 2012-09-25 | Pacific Biosciences Of California, Inc. | Substrates and optical system having at least one optical waveguide, at least one nanometer-scale aperture and at least one lens array and methods of use thereof |
US8288156B2 (en) | 2002-06-21 | 2012-10-16 | Hitachi, Ltd. | Analytical chip and analyzer |
DE102012008375A1 (en) | 2011-04-27 | 2012-10-31 | Genovoxx Gmbh | Methods and components for the detection of nucleic acid chains |
WO2012150035A1 (en) | 2011-05-04 | 2012-11-08 | Genovoxx Gmbh | Nucleoside-triphosphate conjugate and methods for the use thereof |
US8318094B1 (en) | 2010-06-18 | 2012-11-27 | Pacific Biosciences Of California, Inc. | Substrate analysis systems |
US8370079B2 (en) | 2008-11-20 | 2013-02-05 | Pacific Biosciences Of California, Inc. | Algorithms for sequence determination |
US8383369B2 (en) | 2008-09-24 | 2013-02-26 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
US8399188B2 (en) | 2006-09-28 | 2013-03-19 | Illumina, Inc. | Compositions and methods for nucleotide sequencing |
WO2013049135A1 (en) | 2011-09-26 | 2013-04-04 | Gen-Probe Incorporated | Algorithms for sequence determinations |
WO2013045939A1 (en) | 2011-09-29 | 2013-04-04 | Illumina, Inc. | Continuous extension and deblocking in reactions for nucleic acid synthesis and sequencing |
WO2013070627A2 (en) | 2011-11-07 | 2013-05-16 | Illumina, Inc. | Integrated sequencing apparatuses and methods of use |
WO2013085710A2 (en) | 2011-12-09 | 2013-06-13 | Illumina, Inc. | Expanded radix for polymeric tags |
US8465922B2 (en) | 2010-08-26 | 2013-06-18 | Pacific Biosciences Of California, Inc. | Methods and systems for monitoring reactions |
US8465699B2 (en) | 2010-02-19 | 2013-06-18 | Pacific Biosciences Of California, Inc. | Illumination of integrated analytical systems |
US8483969B2 (en) | 2010-09-17 | 2013-07-09 | Illuminia, Inc. | Variation analysis for multiple templates on a solid support |
US8481264B2 (en) | 2008-09-19 | 2013-07-09 | Pacific Biosciences Of California, Inc. | Immobilized nucleic acid complexes for sequence analysis |
US8501405B2 (en) | 2009-04-27 | 2013-08-06 | Pacific Biosciences Of California, Inc. | Real-time sequencing methods and systems |
US8501406B1 (en) | 2009-07-14 | 2013-08-06 | Pacific Biosciences Of California, Inc. | Selectively functionalized arrays |
WO2013117595A2 (en) | 2012-02-07 | 2013-08-15 | Illumina Cambridge Limited | Targeted enrichment and amplification of nucleic acids on a support |
US8518643B2 (en) | 2010-02-04 | 2013-08-27 | Pacific Biosciences Of California, Inc. | Method to improve single molecule analyses |
WO2013131962A1 (en) | 2012-03-06 | 2013-09-12 | Illumina Cambridge Limited | Improved methods of nucleic acid sequencing |
WO2013148970A1 (en) | 2012-03-30 | 2013-10-03 | Illumina, Inc. | Methods and systems for determining fetal chromosomal abnormalities |
US8551704B2 (en) | 2007-02-16 | 2013-10-08 | Pacific Biosciences Of California, Inc. | Controllable strand scission of mini circle DNA |
WO2013151622A1 (en) | 2012-04-03 | 2013-10-10 | Illumina, Inc. | Integrated optoelectronic read head and fluidic cartridge useful for nucleic acid sequencing |
EP2657869A2 (en) | 2007-08-29 | 2013-10-30 | Applied Biosystems, LLC | Alternative nucleic acid sequencing methods |
WO2013184796A1 (en) | 2012-06-08 | 2013-12-12 | Illumina, Inc. | Polymer coatings |
WO2013188582A1 (en) | 2012-06-15 | 2013-12-19 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
WO2014008448A1 (en) | 2012-07-03 | 2014-01-09 | Sloan Kettering Institute For Cancer Research | Quantitative assessment of human t-cell repertoire recovery after allogeneic hematopoietic stem cell transplantation |
US8628940B2 (en) | 2008-09-24 | 2014-01-14 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
US8632975B2 (en) | 2009-06-05 | 2014-01-21 | Life Technologies Corporation | Nucleotide transient binding for sequencing methods |
US8652810B2 (en) | 1998-09-30 | 2014-02-18 | Illumina, Inc. | Methods of nucleic acid amplification and sequencing |
US8658364B2 (en) | 2011-03-23 | 2014-02-25 | Pacific Biosciences Of California, Inc. | Isolation of polymerase-nucleic acid complexes |
WO2014066217A1 (en) | 2012-10-23 | 2014-05-01 | Illumina, Inc. | Hla typing using selective amplification and sequencing |
US8728764B2 (en) | 2008-10-02 | 2014-05-20 | Illumina Cambridge Limited | Nucleic acid sample enrichment for sequencing applications |
WO2014108810A2 (en) | 2013-01-09 | 2014-07-17 | Lumina Cambridge Limited | Sample preparation on a solid support |
WO2014116851A2 (en) | 2013-01-25 | 2014-07-31 | Illumina, Inc. | Methods and systems for using a cloud computing environment to share biological related data |
US8796432B2 (en) | 2005-10-31 | 2014-08-05 | The Trustees Of Columbia University In The City Of New York | Chemically cleavable 3'-o-allyl-DNTP-allyl-fluorophore fluorescent nucleotide analogues and related methods |
US8795961B2 (en) | 2008-09-05 | 2014-08-05 | Pacific Biosciences Of California, Inc. | Preparations, compositions, and methods for nucleic acid sequencing |
US8802424B2 (en) | 2008-01-10 | 2014-08-12 | Pacific Biosciences Of California, Inc. | Methods and systems for analysis of fluorescent reactions with modulated excitation |
WO2014133905A1 (en) | 2013-02-26 | 2014-09-04 | Illumina, Inc. | Gel patterned surfaces |
US8834847B2 (en) | 2010-08-12 | 2014-09-16 | Pacific Biosciences Of California, Inc. | Photodamage mitigation compounds and systems |
WO2014142841A1 (en) | 2013-03-13 | 2014-09-18 | Illumina, Inc. | Multilayer fluidic devices and methods for their fabrication |
WO2014144569A1 (en) | 2013-03-15 | 2014-09-18 | Illumina, Inc. | Super resolution imaging |
WO2014142921A1 (en) | 2013-03-14 | 2014-09-18 | Illumina, Inc. | Modified polymerases for improved incorporation of nucleotide analogues |
WO2014142981A1 (en) | 2013-03-15 | 2014-09-18 | Illumina, Inc. | Enzyme-linked nucleotides |
WO2014142850A1 (en) | 2013-03-13 | 2014-09-18 | Illumina, Inc. | Methods and compositions for nucleic acid sequencing |
US8845880B2 (en) | 2010-12-22 | 2014-09-30 | Genia Technologies, Inc. | Nanopore-based single DNA molecule characterization, identification and isolation using speed bumps |
US8889348B2 (en) | 2006-06-07 | 2014-11-18 | The Trustees Of Columbia University In The City Of New York | DNA sequencing by nanopore using modified nucleotides |
DE202014006405U1 (en) | 2013-08-08 | 2014-12-08 | Illumina, Inc. | Fluid system for reagent delivery to a flow cell |
US8906626B2 (en) | 2000-02-07 | 2014-12-09 | Illumina, Inc. | Multiplex nucleic acid reactions |
US8921046B2 (en) | 2008-09-19 | 2014-12-30 | Pacific Biosciences Of California, Inc. | Nucleic acid sequence analysis |
WO2015002789A1 (en) | 2013-07-03 | 2015-01-08 | Illumina, Inc. | Sequencing by orthogonal synthesis |
WO2015002813A1 (en) | 2013-07-01 | 2015-01-08 | Illumina, Inc. | Catalyst-free surface functionalization and polymer grafting |
US8962242B2 (en) | 2011-01-24 | 2015-02-24 | Genia Technologies, Inc. | System for detecting electrical properties of a molecular complex |
US8986629B2 (en) | 2012-02-27 | 2015-03-24 | Genia Technologies, Inc. | Sensor circuit for controlling, detecting, and measuring a molecular complex |
US8993230B2 (en) | 2008-12-04 | 2015-03-31 | Pacific Biosciences of Californ, Inc. | Asynchronous sequencing of biological polymers |
US8994946B2 (en) | 2010-02-19 | 2015-03-31 | Pacific Biosciences Of California, Inc. | Integrated analytical system and method |
US9041420B2 (en) | 2010-02-08 | 2015-05-26 | Genia Technologies, Inc. | Systems and methods for characterizing a molecule |
EP2876166A1 (en) | 2013-11-20 | 2015-05-27 | Roche Diagniostics GmbH | New compound for sequencing by synthesis |
WO2015084985A2 (en) | 2013-12-03 | 2015-06-11 | Illumina, Inc. | Methods and systems for analyzing image data |
US9062091B2 (en) | 2012-02-15 | 2015-06-23 | Pacific Biosciences Of California, Inc. | Polymerase enzyme substrates with protein shield |
WO2015095226A2 (en) | 2013-12-20 | 2015-06-25 | Illumina, Inc. | Preserving genomic connectivity information in fragmented genomic dna samples |
WO2015100373A2 (en) | 2013-12-23 | 2015-07-02 | Illumina, Inc. | Structured substrates for improving detection of light emissions and methods relating to the same |
WO2015103225A1 (en) | 2013-12-31 | 2015-07-09 | Illumina, Inc. | Addressable flow cell using patterned electrodes |
WO2015106941A1 (en) | 2014-01-16 | 2015-07-23 | Illumina Cambridge Limited | Polynucleotide modification on solid support |
WO2015108663A1 (en) | 2014-01-16 | 2015-07-23 | Illumina, Inc. | Amplicon preparation and sequencing on solid supports |
US9110478B2 (en) | 2011-01-27 | 2015-08-18 | Genia Technologies, Inc. | Temperature regulation of measurement arrays |
US9115163B2 (en) | 2007-10-19 | 2015-08-25 | The Trustees Of Columbia University In The City Of New York | DNA sequence with non-fluorescent nucleotide reversible terminators and cleavable label modified nucleotide terminators |
US9169510B2 (en) | 2005-06-21 | 2015-10-27 | The Trustees Of Columbia University In The City Of New York | Pyrosequencing methods and related compositions |
US9175348B2 (en) | 2012-04-24 | 2015-11-03 | Pacific Biosciences Of California, Inc. | Identification of 5-methyl-C in nucleic acid templates |
US9175342B2 (en) | 2007-10-19 | 2015-11-03 | The Trustees Of Columbia University In The City Of New York | Synthesis of cleavable fluorescent nucleotides as reversible terminators for DNA sequencing by synthesis |
US9175341B2 (en) | 2008-12-11 | 2015-11-03 | Pacific Biosciences Of California, Inc. | Methods for identifying nucleic acid modifications |
WO2015175832A1 (en) | 2014-05-16 | 2015-11-19 | Illumina, Inc. | Nucleic acid synthesis techniques |
WO2015183871A1 (en) | 2014-05-27 | 2015-12-03 | Illumina, Inc. | Systems and methods for biochemical analysis including a base instrument and a removable cartridge |
US9223084B2 (en) | 2012-12-18 | 2015-12-29 | Pacific Biosciences Of California, Inc. | Illumination of optical analytical devices |
WO2015200693A1 (en) | 2014-06-27 | 2015-12-30 | Illumina, Inc. | Modified polymerases for improved incorporation of nucleotide analogues |
WO2015200609A1 (en) | 2014-06-26 | 2015-12-30 | Illumina, Inc. | Library preparation of tagged nucleic acid using single tube add-on protocol |
WO2016003814A1 (en) | 2014-06-30 | 2016-01-07 | Illumina, Inc. | Methods and compositions using one-sided transposition |
US9238836B2 (en) | 2012-03-30 | 2016-01-19 | Pacific Biosciences Of California, Inc. | Methods and compositions for sequencing modified nucleic acids |
US9243284B2 (en) | 2000-12-01 | 2016-01-26 | Life Technologies Corporation | Enzymatic nucleic acid synthesis: compositions and methods for inhibiting pyrophosphorolysis |
WO2016014409A1 (en) | 2014-07-21 | 2016-01-28 | Illumina, Inc. | Polynucleotide enrichment using crispr-cas systems |
US9255292B2 (en) | 2005-10-31 | 2016-02-09 | The Trustees Of Columbia University In The City Of New York | Synthesis of four-color 3′-O-allyl modified photocleavable fluorescent nucleotides and related methods |
WO2016026924A1 (en) | 2014-08-21 | 2016-02-25 | Illumina Cambridge Limited | Reversible surface functionalization |
US9273354B2 (en) | 1997-05-23 | 2016-03-01 | Illumina, Inc. | System and apparatus for sequential processing of analytes |
US9279154B2 (en) | 2011-12-21 | 2016-03-08 | Illumina, Inc. | Apparatus and methods for kinetic analysis and determination of nucleic acid sequences |
US9279148B2 (en) | 1999-04-20 | 2016-03-08 | Illumina, Inc. | Detection of nucleic acid reactions on bead arrays |
US9284604B2 (en) | 2010-11-22 | 2016-03-15 | The Regents Of The University Of California | Methods of identifying a cellular nascent RNA transcript |
WO2016040602A1 (en) | 2014-09-11 | 2016-03-17 | Epicentre Technologies Corporation | Reduced representation bisulfite sequencing using uracil n-glycosylase (ung) and endonuclease iv |
WO2016040607A1 (en) | 2014-09-12 | 2016-03-17 | Illumina, Inc. | Compositions, systems, and methods for detecting the presence of polymer subunits using chemiluminescence |
WO2016044233A1 (en) | 2014-09-18 | 2016-03-24 | Illumina, Inc. | Methods and systems for analyzing nucleic acid sequencing data |
WO2016054096A1 (en) | 2014-09-30 | 2016-04-07 | Illumina, Inc. | Modified polymerases for improved incorporation of nucleotide analogues |
WO2016061484A2 (en) | 2014-10-16 | 2016-04-21 | Illumina, Inc. | Optical scanning systems for in situ genetic analysis |
US9322062B2 (en) | 2013-10-23 | 2016-04-26 | Genia Technologies, Inc. | Process for biosensor well formation |
WO2016073237A1 (en) | 2014-11-05 | 2016-05-12 | Illumina Cambridge Limited | Reducing dna damage during sample preparation and sequencing using siderophore chelators |
US9365839B2 (en) | 2009-03-27 | 2016-06-14 | Life Technologies Corporation | Polymerase compositions and methods |
US9372308B1 (en) | 2012-06-17 | 2016-06-21 | Pacific Biosciences Of California, Inc. | Arrays of integrated analytical devices and methods for production |
US9377388B2 (en) | 1997-03-14 | 2016-06-28 | Trustees Of Tufts College | Methods for detecting target analytes and enzymatic reactions |
US9416414B2 (en) | 2013-10-24 | 2016-08-16 | Pacific Biosciences Of California, Inc. | Delaying real-time sequencing |
US9458493B2 (en) | 1998-12-23 | 2016-10-04 | Empire Ip Llc | Sequencing method using magnifying tags |
WO2016162309A1 (en) | 2015-04-10 | 2016-10-13 | Spatial Transcriptomics Ab | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
WO2016168386A1 (en) | 2015-04-14 | 2016-10-20 | Illumina, Inc. | Structured substrates for improving detection of light emissions and methods relating to the same |
EP2119722B1 (en) | 2002-08-23 | 2016-10-26 | Illumina Cambridge Limited | Labelled nucleotides |
US9494554B2 (en) | 2012-06-15 | 2016-11-15 | Genia Technologies, Inc. | Chip set-up and high-accuracy nucleic acid sequencing |
WO2016183218A1 (en) | 2015-05-12 | 2016-11-17 | Illumina, Inc. | Field-effect apparatus and methods for sequencing nucelic acids |
WO2016183029A1 (en) | 2015-05-11 | 2016-11-17 | Illumina, Inc. | Platform for discovery and analysis of therapeutic agents |
WO2016196358A1 (en) | 2015-05-29 | 2016-12-08 | Epicentre Technologies Corporation | Methods of analyzing nucleic acids |
WO2016196210A2 (en) | 2015-05-29 | 2016-12-08 | Illumina, Inc. | Sample carrier and assay system for conducting designated reactions |
US9551697B2 (en) | 2013-10-17 | 2017-01-24 | Genia Technologies, Inc. | Non-faradaic, capacitively coupled measurement in a nanopore cell array |
WO2017015018A1 (en) | 2015-07-17 | 2017-01-26 | Illumina, Inc. | Polymer sheets for sequencing applications |
WO2017019278A1 (en) | 2015-07-30 | 2017-02-02 | Illumina, Inc. | Orthogonal deblocking of nucleotides |
WO2017019456A2 (en) | 2015-07-27 | 2017-02-02 | Illumina, Inc. | Spatial mapping of nucleic acid sequence information |
US9593373B2 (en) | 2013-03-15 | 2017-03-14 | Illumina Cambridge Limited | Modified nucleosides or nucleotides |
DE202017100081U1 (en) | 2016-01-11 | 2017-03-19 | Illumina, Inc. | Detection device with a microfluorometer, a fluidic system and a flow cell detent module |
US9605307B2 (en) | 2010-02-08 | 2017-03-28 | Genia Technologies, Inc. | Systems and methods for forming a nanopore in a lipid bilayer |
US9605309B2 (en) | 2012-11-09 | 2017-03-28 | Genia Technologies, Inc. | Nucleic acid sequencing using tags |
US9606058B2 (en) | 2014-08-08 | 2017-03-28 | Quantum-Si Incorporated | Integrated device for temporal binning of received photons |
US9606068B2 (en) | 2014-08-27 | 2017-03-28 | Pacific Biosciences Of California, Inc. | Arrays of integrated analytical devices |
US9611510B2 (en) | 2011-04-06 | 2017-04-04 | The University Of Chicago | Composition and methods related to modification of 5-methylcytosine (5-mC) |
US9624539B2 (en) | 2011-05-23 | 2017-04-18 | The Trustees Of Columbia University In The City Of New York | DNA sequencing by synthesis using Raman and infrared spectroscopy detection |
US9624540B2 (en) | 2013-02-22 | 2017-04-18 | Pacific Biosciences Of California, Inc. | Integrated illumination of optical analytical devices |
US9670535B2 (en) | 2011-10-28 | 2017-06-06 | Illumina, Inc. | Microarray fabrication system and method |
US9670545B2 (en) | 2013-06-11 | 2017-06-06 | Coutagen Life Sciences, Inc. | Methods and kits for treating and classifying individuals at risk of or suffering from TRAP1 change-of-function |
US9678055B2 (en) | 2010-02-08 | 2017-06-13 | Genia Technologies, Inc. | Methods for forming a nanopore in a lipid bilayer |
US9678012B2 (en) | 2014-08-08 | 2017-06-13 | Quantum-Si Incorporated | Integrated device with external light source for probing detecting and analyzing molecules |
US9708655B2 (en) | 2014-06-03 | 2017-07-18 | Illumina, Inc. | Compositions, systems, and methods for detecting events using tethers anchored to or adjacent to nanopores |
US9708358B2 (en) | 2000-10-06 | 2017-07-18 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
US9759711B2 (en) | 2013-02-05 | 2017-09-12 | Genia Technologies, Inc. | Nanopore arrays |
WO2017165703A1 (en) | 2016-03-24 | 2017-09-28 | Illumina, Inc. | Photonic superlattice-based devices and compositions for use in luminescent imaging, and methods of using the same |
WO2017177017A1 (en) | 2016-04-07 | 2017-10-12 | Omniome, Inc. | Methods of quantifying target nucleic acids and identifying sequence variants |
WO2017184996A1 (en) | 2016-04-22 | 2017-10-26 | Omniome, Inc. | Nucleic acid sequencing method and system employing enhanced detection of nucleotide-specific ternary complex formation |
WO2017184997A1 (en) | 2016-04-22 | 2017-10-26 | Illumina, Inc. | Photonic stucture-based devices and compositions for use in luminescent imaging of multiple sites within a pixel, and methods of using the same |
WO2017182578A1 (en) | 2016-04-20 | 2017-10-26 | Qiagen Gmbh | Method for generating a stranded rna library |
WO2017190012A1 (en) | 2016-04-29 | 2017-11-02 | Omniome, Inc. | Method of nucleic acid sequence determination |
US9815916B2 (en) | 2014-10-31 | 2017-11-14 | Illumina Cambridge Limited | Polymers and DNA copolymer coatings |
WO2017197027A1 (en) | 2016-05-11 | 2017-11-16 | Illumina, Inc. | Polynucleotide enrichment and amplification using argonaute systems |
WO2017201198A1 (en) | 2016-05-18 | 2017-11-23 | Illumina, Inc. | Self assembled patterning using patterned hydrophobic surfaces |
US9863880B2 (en) | 2013-11-17 | 2018-01-09 | Quantum-Si Incorporated | Optical system and assay chip for probing, detecting and analyzing molecules |
WO2018018008A1 (en) | 2016-07-22 | 2018-01-25 | Oregon Health & Science University | Single cell whole genome libraries and combinatorial indexing methods of making thereof |
WO2018034780A1 (en) | 2016-08-15 | 2018-02-22 | Omniome, Inc. | Sequencing method for rapid identification and processing of cognate nucleotide pairs |
US9914979B2 (en) | 2013-03-04 | 2018-03-13 | Fry Laboratories, LLC | Method and kit for characterizing microorganisms |
US9921157B2 (en) | 2014-08-08 | 2018-03-20 | Quantum-Si Incorporated | Optical system and assay chip for probing, detecting and analyzing molecules |
WO2018064116A1 (en) | 2016-09-28 | 2018-04-05 | Illumina, Inc. | Methods and systems for data compression |
EP3308860A1 (en) | 2016-10-14 | 2018-04-18 | Illumina, Inc. | Cartridge assembly |
US9951383B2 (en) | 2008-12-11 | 2018-04-24 | Pacific Biosciences Of California, Inc. | Methods of sequencing and identifying the position of a modified base in a nucleic acid |
US9951385B1 (en) | 2017-04-25 | 2018-04-24 | Omniome, Inc. | Methods and apparatus that increase sequencing-by-binding efficiency |
WO2018075785A1 (en) | 2016-10-19 | 2018-04-26 | Illumina, Inc. | Methods for chemical ligation of nucleic acids |
US9957291B2 (en) | 2013-08-05 | 2018-05-01 | Pacific Biosciences Of California, Inc. | Protected fluorescent reagent compounds |
US9976174B2 (en) | 2015-03-24 | 2018-05-22 | Illumina Cambridge Limited | Methods, carrier assemblies, and systems for imaging samples for biological or chemical analysis |
WO2018093780A1 (en) | 2016-11-16 | 2018-05-24 | Illumina, Inc. | Validation methods and systems for sequence variant calls |
WO2018107129A1 (en) | 2016-12-09 | 2018-06-14 | The Broad Institute, Inc. | Crispr effector system based diagnostics |
WO2018119063A1 (en) | 2016-12-22 | 2018-06-28 | Illumina, Inc. | Arrays with quality control tracers |
WO2018119053A1 (en) | 2016-12-22 | 2018-06-28 | Illumina, Inc. | Arrays including a resin film and a patterned polymer layer |
WO2018119057A2 (en) | 2016-12-22 | 2018-06-28 | Illumina, Inc. | Array including sequencing primer and non-sequencing entity |
WO2018125759A1 (en) | 2016-12-30 | 2018-07-05 | Omniome, Inc. | Method and system employing distinguishable polymerases for detecting ternary complexes and identifying cognate nucleotides |
WO2018128777A1 (en) | 2017-01-05 | 2018-07-12 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
WO2018128544A1 (en) | 2017-01-06 | 2018-07-12 | Agendia N.V. | Biomarkers for selecting patient groups, and uses thereof. |
WO2018129314A1 (en) | 2017-01-06 | 2018-07-12 | Illumina, Inc. | Phasing correction |
WO2018132389A1 (en) | 2017-01-10 | 2018-07-19 | Omniome, Inc. | Polymerases engineered to reduce nucleotide-independent dna binding |
WO2018136487A1 (en) | 2017-01-20 | 2018-07-26 | Omniome, Inc. | Process for cognate nucleotide detection in a nucleic acid sequencing workflow |
WO2018136118A1 (en) | 2017-01-20 | 2018-07-26 | Omniome, Inc. | Genotyping by polymerase binding |
WO2018136117A1 (en) | 2017-01-20 | 2018-07-26 | Omniome, Inc. | Allele-specific capture of nucleic acids |
WO2018136416A1 (en) | 2017-01-17 | 2018-07-26 | Illumina, Inc. | Oncogenic splice variant determination |
EP3354750A1 (en) | 2012-07-18 | 2018-08-01 | Siemens Healthcare Diagnostics Inc. | Kit of normalizing biological samples |
WO2018144567A1 (en) | 2017-02-01 | 2018-08-09 | Illumina, Inc. | System and method with fiducials in non-rectilinear layouts |
WO2018144563A1 (en) | 2017-02-01 | 2018-08-09 | Illumina, Inc. | System and method with fiducials of non-closed shapes |
WO2018144574A1 (en) | 2017-02-01 | 2018-08-09 | Illumina, Inc. | System and method with fiducials having offset layouts |
WO2018151601A1 (en) | 2017-02-17 | 2018-08-23 | Stichting Vumc | Swarm intelligence-enhanced diagnosis and therapy selection for cancer using tumor- educated platelets |
WO2018152162A1 (en) | 2017-02-15 | 2018-08-23 | Omniome, Inc. | Distinguishing sequences by detecting polymerase dissociation |
WO2018156519A1 (en) | 2017-02-21 | 2018-08-30 | Illumina Inc. | Tagmentation using immobilized transposomes with linkers |
WO2018170340A1 (en) | 2017-03-15 | 2018-09-20 | The Broad Institute, Inc. | Crispr effector system based diagnostics for virus detection |
WO2018175798A1 (en) | 2017-03-24 | 2018-09-27 | Life Technologies Corporation | Polynucleotide adapters and methods of use thereof |
WO2018175258A1 (en) | 2017-03-20 | 2018-09-27 | Illumina, Inc. | Methods and compositions for preparing nuclelic acid libraries |
US10107804B2 (en) | 2001-03-23 | 2018-10-23 | Trustees Of Tufts College | Methods for detecting target analytes and enzymatic reactions |
WO2018200709A1 (en) | 2017-04-25 | 2018-11-01 | Omniome, Inc. | Methods and apparatus that increase sequencing-by-binding efficiency |
WO2018200380A1 (en) | 2017-04-23 | 2018-11-01 | Illumina, Inc. | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
WO2018197945A1 (en) | 2017-04-23 | 2018-11-01 | Illumina Cambridge Limited | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
WO2018200386A1 (en) | 2017-04-23 | 2018-11-01 | Illumina, Inc. | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
WO2018204423A1 (en) | 2017-05-01 | 2018-11-08 | Illumina, Inc. | Optimal index sequences for multiplex massively parallel sequencing |
WO2018208699A1 (en) | 2017-05-08 | 2018-11-15 | Illumina, Inc. | Universal short adapters for indexing of polynucleotide samples |
US10150872B2 (en) | 2015-02-04 | 2018-12-11 | Pacific Biosciences Of California, Inc. | Multimeric protected fluorescent reagents |
WO2018226708A1 (en) | 2017-06-07 | 2018-12-13 | Oregon Health & Science University | Single cell whole genome libraries for methylation sequencing |
WO2018236631A1 (en) | 2017-06-20 | 2018-12-27 | Illumina, Inc. | Methods and compositions for addressing inefficiencies in amplification reactions |
US10174363B2 (en) | 2015-05-20 | 2019-01-08 | Quantum-Si Incorporated | Methods for nucleic acid sequencing |
WO2019018366A1 (en) | 2017-07-18 | 2019-01-24 | Omniome, Inc. | Method of chemically modifying plastic surfaces |
GB201820341D0 (en) | 2018-12-13 | 2019-01-30 | 10X Genomics Inc | Method for transposase-mediated spatial tagging and analysing genomic DNA in a biological specimen |
GB201820300D0 (en) | 2018-12-13 | 2019-01-30 | 10X Genomics Inc | Method for spatial tagging and analysing genomic DNA in a biological specimen |
WO2019023924A1 (en) | 2017-08-01 | 2019-02-07 | Helitec Limited | Methods of enriching and determining target nucleotide sequences |
WO2019023951A1 (en) | 2017-08-01 | 2019-02-07 | 深圳华大智造科技有限公司 | Nucleic acid sequencing method |
WO2019028166A1 (en) | 2017-08-01 | 2019-02-07 | Illumina, Inc. | Hydrogel beads for nucleotide sequencing |
WO2019028047A1 (en) | 2017-08-01 | 2019-02-07 | Illumina, Inc | Spatial indexing of genetic material and library preparation using hydrogel beads and flow cells |
WO2019027767A1 (en) | 2017-07-31 | 2019-02-07 | Illumina Inc. | Sequencing system with multiplexed biological sample aggregation |
US10206911B2 (en) | 2012-10-26 | 2019-02-19 | Memorial Sloan-Kettering Cancer Center | Androgen receptor variants and methods for making and using |
WO2019035897A1 (en) | 2017-08-15 | 2019-02-21 | Omniome, Inc. | Scanning apparatus and methods useful for detection of chemical and biological analytes |
US10227585B2 (en) | 2008-09-12 | 2019-03-12 | University Of Washington | Sequence tag directed subassembly of short sequencing reads into long sequencing reads |
WO2019055715A1 (en) | 2017-09-15 | 2019-03-21 | Illumina, Inc. | Universal short adapters with variable length non-random unique molecular identifiers |
EP3460075A1 (en) | 2014-07-15 | 2019-03-27 | Illumina, Inc. | Biochemically activated electronic device |
US10246705B2 (en) | 2011-02-10 | 2019-04-02 | Ilumina, Inc. | Linking sequence reads using paired code tags |
US10246744B2 (en) | 2016-08-15 | 2019-04-02 | Omniome, Inc. | Method and system for sequencing nucleic acids |
US10253352B2 (en) | 2015-11-17 | 2019-04-09 | Omniome, Inc. | Methods for determining sequence profiles |
WO2019079182A1 (en) | 2017-10-16 | 2019-04-25 | Illumina, Inc. | Semi-supervised learning for training an ensemble of deep convolutional neural networks |
WO2019079202A1 (en) | 2017-10-16 | 2019-04-25 | Illumina, Inc. | Aberrant splicing detection using convolutional neural networks (cnns) |
WO2019079593A1 (en) | 2017-10-19 | 2019-04-25 | Omniome, Inc. | Simultaneous background reduction and complex stabilization in binding assay workflows |
US10273537B2 (en) | 2011-10-14 | 2019-04-30 | Pacific Biosciences Of California, Inc. | Real-time redox sequencing methods |
US10294514B2 (en) | 2016-04-29 | 2019-05-21 | Omniome, Inc. | Sequencing method employing ternary complex destabilization to identify cognate nucleotides |
US10302972B2 (en) | 2015-01-23 | 2019-05-28 | Pacific Biosciences Of California, Inc. | Waveguide transmission |
WO2019136376A1 (en) | 2018-01-08 | 2019-07-11 | Illumina, Inc. | High-throughput sequencing with semiconductor-based detection |
US10350570B2 (en) | 2014-12-15 | 2019-07-16 | Illumina, Inc. | Compositions and methods for single molecular placement on a substrate |
WO2019140402A1 (en) | 2018-01-15 | 2019-07-18 | Illumina, Inc. | Deep learning-based variant classifier |
US10365434B2 (en) | 2015-06-12 | 2019-07-30 | Pacific Biosciences Of California, Inc. | Integrated target waveguide devices and systems for optical coupling |
WO2019148206A1 (en) | 2018-01-29 | 2019-08-01 | The Broad Institute, Inc. | Crispr effector system based diagnostics |
WO2019161381A1 (en) | 2018-02-16 | 2019-08-22 | Illumina, Inc. | Charge-tagged nucleotides and methods of use thereof |
WO2019160820A1 (en) | 2018-02-13 | 2019-08-22 | Illumina, Inc. | Dna sequencing using hydrogel beads |
US10400272B1 (en) | 2018-04-26 | 2019-09-03 | Omniome, Inc. | Methods and compositions for stabilizing nucleic acid-nucleotide-polymerase complexes |
US10421995B2 (en) | 2013-10-23 | 2019-09-24 | Genia Technologies, Inc. | High speed molecular sensing with nanopores |
US10428367B2 (en) | 2012-04-11 | 2019-10-01 | Illumina, Inc. | Portable genetic detection and analysis system and method |
WO2019195225A1 (en) | 2018-04-02 | 2019-10-10 | Illumina, Inc. | Compositions and methods for making controls for sequence-based genetic testing |
US10443087B2 (en) | 2014-06-13 | 2019-10-15 | Illumina Cambridge Limited | Methods and compositions for preparing sequencing libraries |
WO2019200338A1 (en) | 2018-04-12 | 2019-10-17 | Illumina, Inc. | Variant classifier based on deep neural networks |
US10450598B2 (en) | 2015-09-11 | 2019-10-22 | Illumina, Inc. | Systems and methods for obtaining a droplet having a designated concentration of a substance-of-interest |
WO2019203986A1 (en) | 2018-04-19 | 2019-10-24 | Omniome, Inc. | Improving accuracy of base calls in nucleic acid sequencing methods |
WO2019204229A1 (en) | 2018-04-20 | 2019-10-24 | Illumina, Inc. | Methods of encapsulating single cells, the encapsulated cells and uses thereof |
US10457936B2 (en) | 2011-02-02 | 2019-10-29 | University Of Washington Through Its Center For Commercialization | Massively parallel contiguity mapping |
EP3564252A1 (en) | 2014-08-08 | 2019-11-06 | Illumina Cambridge Limited | Modified nucleotide linkers |
US10472669B2 (en) | 2010-04-05 | 2019-11-12 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
WO2019222264A1 (en) | 2018-05-15 | 2019-11-21 | Illumina, Inc. | Compositions and methods for chemical cleavage and deprotection of surface-bound oligonucleotides |
US10487356B2 (en) | 2015-03-16 | 2019-11-26 | Pacific Biosciences Of California, Inc. | Integrated devices and systems for free-space optical coupling |
WO2019227015A1 (en) | 2018-05-25 | 2019-11-28 | Illumina, Inc. | Circulating rna signatures specific to preeclampsia |
WO2019231568A1 (en) | 2018-05-31 | 2019-12-05 | Omniome, Inc. | Increased signal to noise in nucleic acid sequencing |
WO2020014280A1 (en) | 2018-07-11 | 2020-01-16 | Illumina, Inc. | DEEP LEARNING-BASED FRAMEWORK FOR IDENTIFYING SEQUENCE PATTERNS THAT CAUSE SEQUENCE-SPECIFIC ERRORS (SSEs) |
US10540783B2 (en) | 2013-11-01 | 2020-01-21 | Illumina, Inc. | Image analysis useful for patterned objects |
WO2020023362A1 (en) | 2018-07-24 | 2020-01-30 | Omniome, Inc. | Serial formation of ternary complex species |
WO2020022891A2 (en) | 2018-07-26 | 2020-01-30 | Stichting Vumc | Biomarkers for atrial fibrillation |
WO2020033601A1 (en) | 2018-08-07 | 2020-02-13 | The Broad Institute, Inc. | Novel cas12b enzymes and systems |
WO2020036991A1 (en) | 2018-08-15 | 2020-02-20 | Illumina, Inc. | Compositions and methods for improving library enrichment |
US10577649B2 (en) | 2014-11-11 | 2020-03-03 | Illumina, Inc. | Polynucleotide amplification using CRISPR-Cas systems |
US10576471B2 (en) | 2015-03-20 | 2020-03-03 | Illumina, Inc. | Fluidics cartridge for use in the vertical or substantially vertical position |
US10590464B2 (en) | 2015-05-29 | 2020-03-17 | Illumina Cambridge Limited | Enhanced utilization of surface primers in clusters |
DE202019106694U1 (en) | 2019-12-02 | 2020-03-19 | Omniome, Inc. | System for sequencing nucleic acids in fluid foam |
DE202019106695U1 (en) | 2019-12-02 | 2020-03-19 | Omniome, Inc. | System for sequencing nucleic acids in fluid foam |
US10597643B2 (en) | 2016-04-29 | 2020-03-24 | Omniome, Inc. | Polymerases engineered to reduce nucleotide-independent DNA binding |
WO2020060811A1 (en) | 2018-09-17 | 2020-03-26 | Omniome, Inc. | Engineered polymerases for improved sequencing |
WO2020072816A1 (en) | 2018-10-03 | 2020-04-09 | The Broad Institute, Inc. | Crispr effector system based diagnostics for hemorrhagic fever detection |
US10619204B2 (en) | 2014-11-11 | 2020-04-14 | Illumina Cambridge Limited | Methods and arrays for producing and sequencing monoclonal clusters of nucleic acid |
WO2020081122A1 (en) | 2018-10-15 | 2020-04-23 | Illumina, Inc. | Deep learning-based techniques for pre-training deep convolutional neural networks |
WO2020086843A1 (en) | 2018-10-26 | 2020-04-30 | Illumina, Inc. | Modulating polymer beads for dna processing |
WO2020092830A1 (en) | 2018-10-31 | 2020-05-07 | Illumina, Inc. | Polymerases, compositions, and methods of use |
US10648022B2 (en) | 2015-06-03 | 2020-05-12 | Illumina, Inc. | Compositions, systems, and methods for sequencing polynucleotides using tethers anchored to polymerases adjacent to nanopores |
US10648026B2 (en) | 2013-03-15 | 2020-05-12 | The Trustees Of Columbia University In The City Of New York | Raman cluster tagged molecules for biological imaging |
WO2020093261A1 (en) | 2018-11-07 | 2020-05-14 | 深圳华大智造极创科技有限公司 | Method for sequencing polynucleotides |
US10656368B1 (en) | 2019-07-24 | 2020-05-19 | Omniome, Inc. | Method and system for biological imaging using a wide field objective lens |
WO2020099451A1 (en) | 2018-11-14 | 2020-05-22 | Dna Script | Terminal deoxynucleotidyl transferase variants and uses thereof |
WO2020101795A1 (en) | 2018-11-15 | 2020-05-22 | Omniome, Inc. | Electronic detection of nucleic acid structure |
US10662473B2 (en) | 2008-01-28 | 2020-05-26 | Complete Genomics, Inc. | Methods and compositions for efficient base calling in sequencing reactions |
WO2020104851A1 (en) | 2018-11-21 | 2020-05-28 | Akershus Universitetssykehus Hf | Tagmentation-associated multiplex pcr enrichment sequencing |
US10669299B2 (en) | 2015-11-20 | 2020-06-02 | Pacific Biosciences Of California, Inc. | Protected dye-labeled reagents |
WO2020112604A2 (en) | 2018-11-30 | 2020-06-04 | Illumina, Inc. | Analysis of multiple analytes using a single assay |
US10676788B2 (en) | 2015-11-20 | 2020-06-09 | Pacific Biosciences Of California, Inc. | Modified nucleotide reagents |
WO2020117968A2 (en) | 2018-12-05 | 2020-06-11 | Illumina, Inc. | Polymerases, compositions, and methods of use |
WO2020114918A1 (en) | 2018-12-05 | 2020-06-11 | Illumina Cambridge Limited | Methods and compositions for cluster generation by bridge amplification |
WO2020117653A1 (en) | 2018-12-04 | 2020-06-11 | Omniome, Inc. | Mixed-phase fluids for nucleic acid sequencing and other analytical assays |
WO2020120179A1 (en) | 2018-12-14 | 2020-06-18 | Illumina Cambridge Limited | Decreasing phasing with unlabeled nucleotides during sequencing |
WO2020120442A2 (en) | 2018-12-13 | 2020-06-18 | Dna Script | Direct oligonucleotide synthesis on cells and biomolecules |
WO2020126593A1 (en) | 2018-12-17 | 2020-06-25 | Illumina Cambridge Limited | Compositions for use in polyunucleotide sequencing |
WO2020126602A1 (en) | 2018-12-18 | 2020-06-25 | Illumina Cambridge Limited | Methods and compositions for paired end sequencing using a single surface primer |
WO2020132103A1 (en) | 2018-12-19 | 2020-06-25 | Illumina, Inc. | Methods for improving polynucleotide cluster clonality priority |
WO2020126595A1 (en) | 2018-12-17 | 2020-06-25 | Illumina Cambridge Limited | Primer oligonucleotide for sequencing |
WO2020131759A1 (en) | 2018-12-19 | 2020-06-25 | Roche Diagnostics Gmbh | 3' protected nucleotides |
WO2020132350A2 (en) | 2018-12-20 | 2020-06-25 | Omniome, Inc. | Temperature control for analysis of nucleic acids and other analytes |
WO2020136170A2 (en) | 2018-12-26 | 2020-07-02 | Illumina Cambridge Limited | Nucleosides and nucleotides with 3'-hydroxy blocking groups |
WO2020141143A1 (en) | 2019-01-03 | 2020-07-09 | Dna Script | One pot synthesis of sets of oligonucleotides |
EP3680333A1 (en) | 2014-04-29 | 2020-07-15 | Illumina, Inc. | Multiplexed single cell expression analysis using template switch and tagmentation |
WO2020144373A1 (en) | 2019-01-11 | 2020-07-16 | Illumina Cambridge Limited | Complex surface-bound transposome complexes |
US10737267B2 (en) | 2017-04-04 | 2020-08-11 | Omniome, Inc. | Fluidic apparatus and methods useful for chemical and biological reactions |
WO2020167574A1 (en) | 2019-02-14 | 2020-08-20 | Omniome, Inc. | Mitigating adverse impacts of detection systems on nucleic acids and other biological analytes |
WO2020165137A1 (en) | 2019-02-12 | 2020-08-20 | Dna Script | Efficient product cleavage in template-free enzymatic synthesis of polynucleotides. |
EP3698874A1 (en) | 2014-03-11 | 2020-08-26 | Illumina, Inc. | Disposable, integrated microfluidic cartridge and methods of making the same |
EP3699289A1 (en) | 2014-06-09 | 2020-08-26 | Illumina Cambridge Limited | Sample preparation for nucleic acid amplification |
EP3699577A2 (en) | 2012-08-20 | 2020-08-26 | Illumina, Inc. | System for fluorescence lifetime based sequencing |
WO2020180778A1 (en) | 2019-03-01 | 2020-09-10 | Illumina, Inc. | High-throughput single-nuclei and single-cell libraries and methods of making and of using |
US10774372B2 (en) | 2013-06-25 | 2020-09-15 | Prognosy s Biosciences, Inc. | Methods and systems for determining spatial patterns of biological targets in a sample |
US10781483B2 (en) | 2015-11-20 | 2020-09-22 | Pacific Biosciences Of California, Inc. | Labeled nucleotide analogs, reaction mixtures, and methods and systems for sequencing |
WO2020191389A1 (en) | 2019-03-21 | 2020-09-24 | Illumina, Inc. | Training data generation for artificial intelligence-based sequencing |
NL2023316B1 (en) | 2019-03-21 | 2020-09-28 | Illumina Inc | Artificial intelligence-based sequencing |
NL2023311B1 (en) | 2019-03-21 | 2020-09-28 | Illumina Inc | Artificial intelligence-based generation of sequencing metadata |
NL2023312B1 (en) | 2019-03-21 | 2020-09-28 | Illumina Inc | Artificial intelligence-based base calling |
NL2023310B1 (en) | 2019-03-21 | 2020-09-28 | Illumina Inc | Training data generation for artificial intelligence-based sequencing |
NL2023314B1 (en) | 2019-03-21 | 2020-09-28 | Illumina Inc | Artificial intelligence-based quality scoring |
US10787701B2 (en) | 2010-04-05 | 2020-09-29 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US10787698B2 (en) | 2011-06-09 | 2020-09-29 | Illumina, Inc. | Patterned flow-cells useful for nucleic acid analysis |
US10808282B2 (en) | 2015-07-07 | 2020-10-20 | Illumina, Inc. | Selective surface patterning via nanoimprinting |
EP3725893A1 (en) | 2015-02-10 | 2020-10-21 | Illumina, Inc. | Compositions for analyzing cellular components |
US10837040B2 (en) | 2014-04-17 | 2020-11-17 | Dna Script | Method for synthesizing nucleic acids, in particular long nucleic acids, use of said method and kit for implementing said method |
WO2020232410A1 (en) | 2019-05-16 | 2020-11-19 | Illumina, Inc. | Base calling using convolutions |
WO2020227953A1 (en) | 2019-05-15 | 2020-11-19 | 深圳华大智造极创科技有限公司 | Single-channel sequencing method based on self-luminescence |
US10844429B2 (en) | 2017-01-18 | 2020-11-24 | Illumina, Inc. | Methods and systems for generation and error-correction of unique molecular index sets with heterogeneous molecular lengths |
US10844428B2 (en) | 2015-04-28 | 2020-11-24 | Illumina, Inc. | Error suppression in sequenced DNA fragments using redundant reads with unique molecular indices (UMIS) |
US10845308B2 (en) | 2016-12-22 | 2020-11-24 | Quantum-Si Incorporated | Integrated photodetector with direct binning pixel |
WO2020252186A1 (en) | 2019-06-11 | 2020-12-17 | Omniome, Inc. | Calibrated focus sensing |
WO2021008805A1 (en) | 2019-07-12 | 2021-01-21 | Illumina Cambridge Limited | Compositions and methods for preparing nucleic acid sequencing libraries using crispr/cas9 immobilized on a solid support |
WO2021009494A1 (en) | 2019-07-12 | 2021-01-21 | Illumina Cambridge Limited | Nucleic acid library preparation using electrophoresis |
US10906044B2 (en) | 2015-09-02 | 2021-02-02 | Illumina Cambridge Limited | Methods of improving droplet operations in fluidic systems with a filler fluid including a surface regenerative silane |
WO2021018921A1 (en) | 2019-08-01 | 2021-02-04 | Dna Script | Increasing long-sequence yields in template-free enzymatic synthesis of polynucleotides. |
WO2021018919A1 (en) | 2019-07-30 | 2021-02-04 | Dna Script | Template-free enzymatic synthesis of polynucleotides using poly(a) and poly(u) polymerases |
EP3783109A1 (en) | 2015-03-31 | 2021-02-24 | Illumina Cambridge Limited | Surface concatamerization of templates |
WO2021031109A1 (en) | 2019-08-20 | 2021-02-25 | 深圳华大智造极创科技有限公司 | Method for sequencing polynucleotides on basis of optical signal dynamics of luminescent label and secondary luminescent signal |
WO2021050681A1 (en) | 2019-09-10 | 2021-03-18 | Omniome, Inc. | Reversible modification of nucleotides |
WO2021048142A1 (en) | 2019-09-09 | 2021-03-18 | Dna Script | Template-free enzymatic polynucleotide synthesis using photocleavable linkages |
WO2021050962A1 (en) | 2019-09-11 | 2021-03-18 | The United States Of America, As Represented By The Secretary, Department Of Health And Human Services | Cancer detection and classification |
EP3798321A1 (en) | 2015-12-17 | 2021-03-31 | Illumina, Inc. | Distinguishing methylation levels in complex biological samples |
WO2021058438A1 (en) | 2019-09-23 | 2021-04-01 | Dna Script | Increasing long-sequence yields in template-free enzymatic synthesis of polynucleotides |
US10976334B2 (en) | 2015-08-24 | 2021-04-13 | Illumina, Inc. | In-line pressure accumulator and flow-control system for biological or chemical assays |
WO2021076152A1 (en) | 2019-10-18 | 2021-04-22 | Omniome, Inc. | Methods and compositions for capping nucleic acids |
US10995111B2 (en) | 2003-08-22 | 2021-05-04 | Illumina Cambridge Limited | Labelled nucleotides |
WO2021092431A1 (en) | 2019-11-08 | 2021-05-14 | Omniome, Inc. | Engineered polymerases for improved sequencing by binding |
WO2021094251A1 (en) | 2019-11-13 | 2021-05-20 | Dna Script | High efficiency template-free enzymatic synthesis of polynucleotides |
WO2021102236A1 (en) | 2019-11-22 | 2021-05-27 | Illumina, Inc. | Circulating rna signatures specific to preeclampsia |
US11021740B2 (en) | 2017-03-15 | 2021-06-01 | The Broad Institute, Inc. | Devices for CRISPR effector system based diagnostics |
EP3831484A1 (en) | 2016-03-28 | 2021-06-09 | Illumina, Inc. | Multi-plane microarrays |
WO2021113287A1 (en) | 2019-12-04 | 2021-06-10 | Illumina, Inc. | Preparation of dna sequencing libraries for detection of dna pathogens in plasma |
WO2021116270A1 (en) | 2019-12-12 | 2021-06-17 | Dna Script | Chimeric terminal deoxynucleotidyl transferases for template-free enzymatic synthesis of polynucleotides |
WO2021118349A1 (en) | 2019-12-10 | 2021-06-17 | Prinses Máxima Centrum Voor Kinderoncologie B.V. | Methods of typing germ cell tumors |
WO2021127436A2 (en) | 2019-12-19 | 2021-06-24 | Illumina, Inc. | High-throughput single-cell libraries and methods of making and of using |
WO2021123074A1 (en) | 2019-12-18 | 2021-06-24 | F. Hoffmann-La Roche Ag | Methods of sequencing by synthesis using a consecutive labeling scheme |
WO2021122539A1 (en) | 2019-12-16 | 2021-06-24 | Dna Script | Template-free enzymatic polynucleotide synthesis using dismutationless terminal deoxynucleotidyl transferase variants |
US11059849B2 (en) | 2014-09-02 | 2021-07-13 | Dna Script | Modified nucleotides for synthesis of nucleic acids, a kit containing such nucleotides and their use for the production of synthetic nucleic acid sequences or genes |
EP3854884A1 (en) | 2015-08-14 | 2021-07-28 | Illumina, Inc. | Systems and methods using magnetically-responsive sensors for determining a genetic characteristic |
WO2021158511A1 (en) | 2020-02-04 | 2021-08-12 | Omniome, Inc. | Flow cells and methods for their manufacture and use |
WO2021168014A1 (en) | 2020-02-20 | 2021-08-26 | Illumina, Inc. | Knowledge distillation and gradient pruning-based compression of artificial intelligence-based base caller |
WO2021168018A1 (en) | 2020-02-20 | 2021-08-26 | Illumina, Inc. | Hardware execution and acceleration of artificial intelligence-based base caller |
WO2021168353A2 (en) | 2020-02-20 | 2021-08-26 | Illumina, Inc. | Artificial intelligence-based many-to-many base calling |
US11104937B2 (en) | 2017-03-15 | 2021-08-31 | The Broad Institute, Inc. | CRISPR effector system based diagnostics |
WO2021170524A1 (en) | 2020-02-25 | 2021-09-02 | Dna Script | Method and apparatus for enzymatic synthesis of polynucleotides |
US11111533B2 (en) | 2018-03-09 | 2021-09-07 | Illumina Cambridge Limited | Generalized stochastic super-resolution sequencing |
WO2021178467A1 (en) | 2020-03-03 | 2021-09-10 | Omniome, Inc. | Methods and compositions for sequencing double stranded nucleic acids |
EP3878974A1 (en) | 2015-07-06 | 2021-09-15 | Illumina Cambridge Limited | Sample preparation for nucleic acid amplification |
WO2021213903A1 (en) | 2020-04-20 | 2021-10-28 | Dna Script | Terminal deoxynucleotidyl transferase variants and uses thereof |
WO2021221500A1 (en) | 2020-04-27 | 2021-11-04 | Agendia N.V. | Treatment of her2 negative, mammaprint high risk 2 breast cancer. |
WO2021226285A1 (en) | 2020-05-05 | 2021-11-11 | Illumina, Inc. | Equalization-based image processing and spatial crosstalk attenuator |
WO2021225886A1 (en) | 2020-05-05 | 2021-11-11 | Omniome, Inc. | Compositions and methods for modifying polymerase-nucleic acid complexes |
US11174515B2 (en) | 2017-03-15 | 2021-11-16 | The Broad Institute, Inc. | CRISPR effector system based diagnostics |
EP3910069A1 (en) | 2014-02-18 | 2021-11-17 | Illumina, Inc. | Methods and composition for dna profiling |
WO2021231477A2 (en) | 2020-05-12 | 2021-11-18 | Illumina, Inc. | Generating nucleic acids with modified bases using recombinant terminal deoxynucleotidyl transferase |
US11180794B2 (en) | 2018-05-31 | 2021-11-23 | Omniome, Inc. | Methods and compositions for capping nucleic acids |
US11181478B2 (en) | 2013-12-10 | 2021-11-23 | Illumina, Inc. | Biosensors for biological or chemical analysis and methods of manufacturing the same |
EP3913358A1 (en) | 2018-01-08 | 2021-11-24 | Illumina Inc | High-throughput sequencing with semiconductor-based detection |
EP3916108A1 (en) | 2016-11-17 | 2021-12-01 | Spatial Transcriptomics AB | Method for spatial tagging and analysing nucleic acids in a biological specimen |
WO2021252617A1 (en) | 2020-06-09 | 2021-12-16 | Illumina, Inc. | Methods for increasing yield of sequencing libraries |
WO2021254934A1 (en) | 2020-06-16 | 2021-12-23 | Dna Script | Systems, apparatus and kits for enzymatic polynucleotide synthesis |
WO2021259881A1 (en) | 2020-06-22 | 2021-12-30 | Illumina Cambridge Limited | Nucleosides and nucleotides with 3' acetal blocking group |
WO2022006495A1 (en) | 2020-07-02 | 2022-01-06 | Illumina, Inc. | A method to calibrate nucleic acid library seeding efficiency in flowcells |
WO2022006081A1 (en) | 2020-06-30 | 2022-01-06 | Illumina, Inc. | Catalytically controlled sequencing by synthesis to produce scarless dna |
WO2022010965A1 (en) | 2020-07-08 | 2022-01-13 | Illumina, Inc. | Beads as transposome carriers |
WO2022013094A1 (en) | 2020-07-15 | 2022-01-20 | Dna Script | Massively parallel enzymatic synthesis of polynucleotides |
WO2022031955A1 (en) | 2020-08-06 | 2022-02-10 | Illumina, Inc. | Preparation of rna and dna sequencing libraries using bead-linked transposomes |
WO2022040176A1 (en) | 2020-08-18 | 2022-02-24 | Illumina, Inc. | Sequence-specific targeted transposition and selection and sorting of nucleic acids |
WO2022053610A1 (en) | 2020-09-11 | 2022-03-17 | Illumina Cambridge Limited | Methods of enriching a target sequence from a sequencing library using hairpin adaptors |
EP3974538A1 (en) | 2014-11-05 | 2022-03-30 | Illumina Cambridge Limited | Sequencing from multiple primers to increase data rate and density |
WO2022063835A1 (en) | 2020-09-22 | 2022-03-31 | Dna Script | Stabilized n-terminally truncated terminal deoxynucleotidyl transferase variants and uses thereof |
WO2022087150A2 (en) | 2020-10-21 | 2022-04-28 | Illumina, Inc. | Sequencing templates comprising multiple inserts and compositions and methods for improving sequencing throughput |
WO2022090323A1 (en) | 2020-10-29 | 2022-05-05 | Dna Script | Enzymatic synthesis of polynucleotide probes |
WO2022090057A1 (en) | 2020-10-26 | 2022-05-05 | Dna Script | Novel variants of endonuclease v and uses thereof |
US11332790B2 (en) | 2019-12-23 | 2022-05-17 | 10X Genomics, Inc. | Methods for spatial analysis using RNA-templated ligation |
US11344200B2 (en) | 2016-02-17 | 2022-05-31 | Tesseract Health, Inc. | Sensor and device for lifetime imaging and detection applications |
US11352659B2 (en) | 2011-04-13 | 2022-06-07 | Spatial Transcriptomics Ab | Methods of detecting analytes |
US11377680B2 (en) | 2019-02-19 | 2022-07-05 | Ultima Genomics, Inc. | Linkers and methods for optical detection and sequencing |
US11377655B2 (en) | 2019-07-16 | 2022-07-05 | Pacific Biosciences Of California, Inc. | Synthetic nucleic acids having non-natural structures |
US11391626B2 (en) | 2018-06-22 | 2022-07-19 | Quantum-Si Incorporated | Integrated photodetector with charge storage bin of varied detection time |
WO2022155331A1 (en) | 2021-01-13 | 2022-07-21 | Pacific Biosciences Of California, Inc. | Surface structuring with colloidal assembly |
WO2022165188A1 (en) | 2021-01-29 | 2022-08-04 | Illumina, Inc. | Methods, compositions and kits to improve seeding efficiency of flow cells with polynucleotides |
US11408029B2 (en) | 2020-06-25 | 2022-08-09 | 10X Genomics, Inc. | Spatial analysis of DNA methylation |
US11407992B2 (en) | 2020-06-08 | 2022-08-09 | 10X Genomics, Inc. | Methods of determining a surgical margin and methods of use thereof |
WO2022169972A1 (en) | 2021-02-04 | 2022-08-11 | Illumina, Inc. | Long indexed-linked read generation on transposome bound beads |
WO2022174054A1 (en) | 2021-02-13 | 2022-08-18 | The General Hospital Corporation | Methods and compositions for in situ macromolecule detection and uses thereof |
US11434524B2 (en) | 2020-06-10 | 2022-09-06 | 10X Genomics, Inc. | Methods for determining a location of an analyte in a biological sample |
WO2022197752A1 (en) | 2021-03-16 | 2022-09-22 | Illumina, Inc. | Tile location and/or cycle based weight set selection for base calling |
US11455487B1 (en) | 2021-10-26 | 2022-09-27 | Illumina Software, Inc. | Intensity extraction and crosstalk attenuation using interpolation and adaptation for base calling |
WO2022204032A1 (en) | 2021-03-22 | 2022-09-29 | Illumina Cambridge Limited | Methods for improving nucleic acid cluster clonality |
US11458469B2 (en) | 2016-10-14 | 2022-10-04 | Illumina, Inc. | Cartridge assembly |
WO2022212330A1 (en) | 2021-03-30 | 2022-10-06 | Illumina, Inc. | Improved methods of isothermal complementary dna and library preparation |
WO2022212280A1 (en) | 2021-03-29 | 2022-10-06 | Illumina, Inc. | Compositions and methods for assessing dna damage in a library and normalizing amplicon size bias |
WO2022207934A1 (en) | 2021-04-02 | 2022-10-06 | Dna Script | Methods and kits for enzymatic synthesis of g4-prone polynucleotides |
WO2022212402A1 (en) | 2021-03-31 | 2022-10-06 | Illumina, Inc. | Methods of preparing directional tagmentation sequencing libraries using transposon-based technology with unique molecular identifiers for error correction |
WO2022213027A1 (en) | 2021-04-02 | 2022-10-06 | Illumina, Inc. | Machine-learning model for detecting a bubble within a nucleotide-sample slide for sequencing |
WO2022212269A1 (en) | 2021-03-29 | 2022-10-06 | Illumina, Inc. | Improved methods of library preparation |
EP4086357A1 (en) | 2015-08-28 | 2022-11-09 | Illumina, Inc. | Nucleic acid sequence analysis from single cells |
WO2022235163A1 (en) | 2021-05-07 | 2022-11-10 | Agendia N.V. | Endocrine treatment of hormone receptor positive breast cancer typed as having a low risk of recurrence |
WO2022240764A1 (en) | 2021-05-10 | 2022-11-17 | Pacific Biosciences Of California, Inc. | Single-molecule seeding and amplification on a surface |
WO2022240766A1 (en) | 2021-05-10 | 2022-11-17 | Pacific Biosciences Of California, Inc. | Dna amplification buffer replenishment during rolling circle amplification |
WO2022243480A1 (en) | 2021-05-20 | 2022-11-24 | Illumina, Inc. | Compositions and methods for sequencing by synthesis |
US11515010B2 (en) | 2021-04-15 | 2022-11-29 | Illumina, Inc. | Deep convolutional neural networks to predict variant pathogenicity using three-dimensional (3D) protein structures |
US11512308B2 (en) | 2020-06-02 | 2022-11-29 | 10X Genomics, Inc. | Nucleic acid library methods |
US11519033B2 (en) | 2018-08-28 | 2022-12-06 | 10X Genomics, Inc. | Method for transposase-mediated spatial tagging and analyzing genomic DNA in a biological sample |
WO2022265994A1 (en) | 2021-06-15 | 2022-12-22 | Illumina, Inc. | Hydrogel-free surface functionalization for sequencing |
US11535887B2 (en) | 2020-04-22 | 2022-12-27 | 10X Genomics, Inc. | Methods for spatial analysis using targeted RNA depletion |
WO2022272260A1 (en) | 2021-06-23 | 2022-12-29 | Illumina, Inc. | Compositions, methods, kits, cartridges, and systems for sequencing reagents |
WO2023278184A1 (en) | 2021-06-29 | 2023-01-05 | Illumina, Inc. | Methods and systems to correct crosstalk in illumination emitted from reaction sites |
WO2023278608A1 (en) | 2021-06-29 | 2023-01-05 | Illumina, Inc. | Self-learned base caller, trained using oligo sequences |
WO2023278966A1 (en) | 2021-06-29 | 2023-01-05 | Illumina, Inc. | Machine-learning model for generating confidence classifications for genomic coordinates |
WO2023278927A1 (en) | 2021-06-29 | 2023-01-05 | Illumina Software, Inc. | Signal-to-noise-ratio metric for determining nucleotide-base calls and base-call quality |
USRE49362E1 (en) | 2006-05-18 | 2023-01-10 | Illumina Cambridge Limited | Dye compounds and the use of their labelled conjugates |
WO2023287617A1 (en) | 2021-07-13 | 2023-01-19 | Illumina, Inc. | Methods and systems for real time extraction of crosstalk in illumination emitted from reaction sites |
US11560592B2 (en) | 2020-05-26 | 2023-01-24 | 10X Genomics, Inc. | Method for resetting an array |
WO2023004357A1 (en) | 2021-07-23 | 2023-01-26 | Illumina, Inc. | Methods for preparing substrate surface for dna sequencing |
WO2023003757A1 (en) | 2021-07-19 | 2023-01-26 | Illumina Software, Inc. | Intensity extraction with interpolation and adaptation for base calling |
WO2023004323A1 (en) | 2021-07-23 | 2023-01-26 | Illumina Software, Inc. | Machine-learning model for recalibrating nucleotide-base calls |
WO2023009758A1 (en) | 2021-07-28 | 2023-02-02 | Illumina, Inc. | Quality score calibration of basecalling systems |
WO2023014741A1 (en) | 2021-08-03 | 2023-02-09 | Illumina Software, Inc. | Base calling using multiple base caller models |
WO2023020728A1 (en) | 2021-08-14 | 2023-02-23 | Illumina, Inc. | Polymerases, compositions, and methods of use |
WO2023023500A1 (en) | 2021-08-17 | 2023-02-23 | Illumina, Inc. | Methods and compositions for identifying methylated cytosines |
US11592447B2 (en) | 2019-11-08 | 2023-02-28 | 10X Genomics, Inc. | Spatially-tagged analyte capture agents for analyte multiplexing |
WO2023035108A1 (en) | 2021-09-07 | 2023-03-16 | 深圳华大智造科技股份有限公司 | Method for analyzing sequence of target polynucleotide |
WO2023035110A1 (en) | 2021-09-07 | 2023-03-16 | 深圳华大智造科技股份有限公司 | Method for analyzing sequence of target polynucleotide |
US11608520B2 (en) | 2020-05-22 | 2023-03-21 | 10X Genomics, Inc. | Spatial analysis to detect sequence variants |
WO2023044229A1 (en) | 2021-09-17 | 2023-03-23 | Illumina, Inc. | Automatically identifying failure sources in nucleotide sequencing from base-call-error patterns |
WO2023049215A1 (en) | 2021-09-22 | 2023-03-30 | Illumina, Inc. | Compressed state-based base calling |
WO2023049558A1 (en) | 2021-09-21 | 2023-03-30 | Illumina, Inc. | A graph reference genome and base-calling approach using imputed haplotypes |
US11618897B2 (en) | 2020-12-21 | 2023-04-04 | 10X Genomics, Inc. | Methods, compositions, and systems for capturing probes and/or barcodes |
WO2023052427A1 (en) | 2021-09-30 | 2023-04-06 | Illumina Cambridge Limited | Polynucleotide sequencing |
WO2023056328A2 (en) | 2021-09-30 | 2023-04-06 | Illumina, Inc. | Solid supports and methods for depleting and/or enriching library fragments prepared from biosamples |
US11624086B2 (en) | 2020-05-22 | 2023-04-11 | 10X Genomics, Inc. | Simultaneous spatio-temporal measurement of gene expression and cellular activity |
WO2023069927A1 (en) | 2021-10-20 | 2023-04-27 | Illumina, Inc. | Methods for capturing library dna for sequencing |
EP4174189A1 (en) | 2021-10-28 | 2023-05-03 | Volker, Leen | Enzyme directed biomolecule labeling |
WO2023081485A1 (en) | 2021-11-08 | 2023-05-11 | Pacific Biosciences Of California, Inc. | Stepwise sequencing of a polynucleotide with a homogenous reaction mixture |
US11649485B2 (en) | 2019-01-06 | 2023-05-16 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
WO2023083997A2 (en) | 2021-11-10 | 2023-05-19 | Dna Script | Novel terminal deoxynucleotidyl |
WO2023083999A2 (en) | 2021-11-10 | 2023-05-19 | Dna Script | Novel terminal deoxynucleotidyl transferase (tdt) variants |
WO2023085932A1 (en) | 2021-11-10 | 2023-05-19 | Omnigen B.V. | Prediction of response following folfirinox treatment in cancer patients |
WO2023102354A1 (en) | 2021-12-02 | 2023-06-08 | Illumina Software, Inc. | Generating cluster-specific-signal corrections for determining nucleotide-base calls |
US11676685B2 (en) | 2019-03-21 | 2023-06-13 | Illumina, Inc. | Artificial intelligence-based quality scoring |
US11680950B2 (en) | 2019-02-20 | 2023-06-20 | Pacific Biosciences Of California, Inc. | Scanning apparatus and methods for detecting chemical and biological analytes |
WO2023122362A1 (en) | 2021-12-23 | 2023-06-29 | Illumina Software, Inc. | Facilitating secure execution of external workflows for genomic sequencing diagnostics |
WO2023122363A1 (en) | 2021-12-23 | 2023-06-29 | Illumina Software, Inc. | Dynamic graphical status summaries for nucelotide sequencing |
US11692218B2 (en) | 2020-06-02 | 2023-07-04 | 10X Genomics, Inc. | Spatial transcriptomics for antigen-receptors |
WO2023129764A1 (en) | 2021-12-29 | 2023-07-06 | Illumina Software, Inc. | Automatically switching variant analysis model versions for genomic analysis applications |
WO2023129896A1 (en) | 2021-12-28 | 2023-07-06 | Illumina Software, Inc. | Machine learning model for recalibrating nucleotide base calls corresponding to target variants |
US11697847B2 (en) | 2013-03-15 | 2023-07-11 | Illumina, Inc. | Super resolution imaging |
US11702698B2 (en) | 2019-11-08 | 2023-07-18 | 10X Genomics, Inc. | Enhancing specificity of analyte binding |
US11702693B2 (en) | 2020-01-21 | 2023-07-18 | 10X Genomics, Inc. | Methods for printing cells and generating arrays of barcoded cells |
WO2023141154A1 (en) | 2022-01-20 | 2023-07-27 | Illumina Cambridge Limited | Methods of detecting methylcytosine and hydroxymethylcytosine by sequencing |
US11732299B2 (en) | 2020-01-21 | 2023-08-22 | 10X Genomics, Inc. | Spatial assays with perturbed cells |
US11732300B2 (en) | 2020-02-05 | 2023-08-22 | 10X Genomics, Inc. | Increasing efficiency of spatial analysis in a biological sample |
US11733238B2 (en) | 2010-04-05 | 2023-08-22 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11739381B2 (en) | 2021-03-18 | 2023-08-29 | 10X Genomics, Inc. | Multiplex capture of gene and protein expression from a biological sample |
BE1030246A1 (en) | 2022-02-04 | 2023-08-30 | Leen Volker | POLYMER-ASSISTED BIOMOLECULE ANALYSIS |
WO2023164660A1 (en) | 2022-02-25 | 2023-08-31 | Illumina, Inc. | Calibration sequences for nucelotide sequencing |
WO2023164492A1 (en) | 2022-02-25 | 2023-08-31 | Illumina, Inc. | Machine-learning models for detecting and adjusting values for nucleotide methylation levels |
US11753673B2 (en) | 2021-09-01 | 2023-09-12 | 10X Genomics, Inc. | Methods, compositions, and kits for blocking a capture probe on a spatial array |
US11761038B1 (en) | 2020-07-06 | 2023-09-19 | 10X Genomics, Inc. | Methods for identifying a location of an RNA in a biological sample |
US11768175B1 (en) | 2020-03-04 | 2023-09-26 | 10X Genomics, Inc. | Electrophoretic methods for spatial analysis |
WO2023183937A1 (en) | 2022-03-25 | 2023-09-28 | Illumina, Inc. | Sequence-to-sequence base calling |
WO2023196572A1 (en) | 2022-04-07 | 2023-10-12 | Illumina Singapore Pte. Ltd. | Altered cytidine deaminases and methods of use |
EP4269618A2 (en) | 2018-06-04 | 2023-11-01 | Illumina, Inc. | Methods of making high-throughput single-cell transcriptome libraries |
WO2023209606A1 (en) | 2022-04-29 | 2023-11-02 | Illumina Cambridge Limited | Methods and systems for encapsulating lyophilised microspheres |
WO2023212601A1 (en) | 2022-04-26 | 2023-11-02 | Illumina, Inc. | Machine-learning models for selecting oligonucleotide probes for array technologies |
US11807851B1 (en) | 2020-02-18 | 2023-11-07 | Ultima Genomics, Inc. | Modified polynucleotides and uses thereof |
EP4276769A2 (en) | 2019-03-21 | 2023-11-15 | Illumina, Inc. | Training data generation for artificial intelligence-based sequencing |
WO2023220627A1 (en) | 2022-05-10 | 2023-11-16 | Illumina Software, Inc. | Adaptive neural network for nucelotide sequencing |
US11821035B1 (en) | 2020-01-29 | 2023-11-21 | 10X Genomics, Inc. | Compositions and methods of making gene expression libraries |
WO2023224488A1 (en) | 2022-05-19 | 2023-11-23 | Agendia N.V. | Dna repair signature and prediction of response following cancer therapy |
WO2023224487A1 (en) | 2022-05-19 | 2023-11-23 | Agendia N.V. | Prediction of response to immune therapy in breast cancer patients |
US11827935B1 (en) | 2020-11-19 | 2023-11-28 | 10X Genomics, Inc. | Methods for spatial analysis using rolling circle amplification and detection probes |
US11835462B2 (en) | 2020-02-11 | 2023-12-05 | 10X Genomics, Inc. | Methods and compositions for partitioning a biological sample |
WO2023235353A2 (en) | 2022-06-03 | 2023-12-07 | Illumina, Inc. | Circulating rna biomarkers for preeclampsia |
WO2023239917A1 (en) | 2022-06-09 | 2023-12-14 | Illumina, Inc. | Dependence of base calling on flow cell tilt |
US11844666B2 (en) | 2008-12-11 | 2023-12-19 | Pacific Biosciences Of California, Inc. | Classification of nucleic acid templates |
WO2023250504A1 (en) | 2022-06-24 | 2023-12-28 | Illumina Software, Inc. | Improving split-read alignment by intelligently identifying and scoring candidate split groups |
WO2024006705A1 (en) | 2022-06-27 | 2024-01-04 | Illumina Software, Inc. | Improved human leukocyte antigen (hla) genotyping |
WO2024006779A1 (en) | 2022-06-27 | 2024-01-04 | Illumina, Inc. | Accelerators for a genotype imputation model |
WO2024006769A1 (en) | 2022-06-27 | 2024-01-04 | Illumina Software, Inc. | Generating and implementing a structural variation graph genome |
US11873480B2 (en) | 2014-10-17 | 2024-01-16 | Illumina Cambridge Limited | Contiguity preserving transposition |
WO2024015962A1 (en) | 2022-07-15 | 2024-01-18 | Pacific Biosciences Of California, Inc. | Blocked asymmetric hairpin adaptors |
US11884971B2 (en) | 2018-02-06 | 2024-01-30 | Pacific Biosciences Of California, Inc. | Compositions and techniques for nucleic acid primer extension |
WO2024026356A1 (en) | 2022-07-26 | 2024-02-01 | Illumina, Inc. | Rapid single-cell multiomics processing using an executable file |
US11891654B2 (en) | 2020-02-24 | 2024-02-06 | 10X Genomics, Inc. | Methods of making gene expression libraries |
US11898205B2 (en) | 2020-02-03 | 2024-02-13 | 10X Genomics, Inc. | Increasing capture efficiency of spatial assays |
US11926863B1 (en) | 2020-02-27 | 2024-03-12 | 10X Genomics, Inc. | Solid state single cell method for analyzing fixed biological cells |
US11926867B2 (en) | 2019-01-06 | 2024-03-12 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
US11926822B1 (en) | 2020-09-23 | 2024-03-12 | 10X Genomics, Inc. | Three-dimensional spatial analysis |
US11926873B2 (en) | 2015-06-17 | 2024-03-12 | The Translational Genomics Research Institute | Methods for predicting onset of a migraine in a subject by detecting STXBP3 RNA levels |
US11940413B2 (en) | 2007-02-05 | 2024-03-26 | IsoPlexis Corporation | Methods and devices for sequencing nucleic acids in smaller batches |
US11953464B2 (en) | 2018-04-12 | 2024-04-09 | Illumina, Inc. | Semiconductor-based biosensors for base calling |
Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP0219342A2 (en) * | 1985-10-15 | 1987-04-22 | Genentech, Inc. | Method and reagents for in vitro oligonucleotide synthesis |
EP0223618A2 (en) * | 1985-07-18 | 1987-05-27 | New York Medical College | Automatable process for nucleotide sequencing |
WO1989003432A1 (en) * | 1987-10-07 | 1989-04-20 | United States Department Of Energy | Method for rapid base sequencing in dna and rna |
WO1989009283A1 (en) * | 1988-03-25 | 1989-10-05 | Edward David Hyman | Pyrophosphate-based method and apparatus for sequencing nucleic acids |
WO1990013666A1 (en) * | 1989-05-11 | 1990-11-15 | Amersham International Plc | Sequencing method |
-
1990
- 1990-10-26 WO PCT/US1990/006178 patent/WO1991006678A1/en not_active Application Discontinuation
- 1990-10-26 EP EP19910900474 patent/EP0450060A1/en not_active Withdrawn
- 1990-10-26 CA CA 2044616 patent/CA2044616A1/en not_active Abandoned
Patent Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP0223618A2 (en) * | 1985-07-18 | 1987-05-27 | New York Medical College | Automatable process for nucleotide sequencing |
EP0219342A2 (en) * | 1985-10-15 | 1987-04-22 | Genentech, Inc. | Method and reagents for in vitro oligonucleotide synthesis |
WO1989003432A1 (en) * | 1987-10-07 | 1989-04-20 | United States Department Of Energy | Method for rapid base sequencing in dna and rna |
WO1989009283A1 (en) * | 1988-03-25 | 1989-10-05 | Edward David Hyman | Pyrophosphate-based method and apparatus for sequencing nucleic acids |
WO1990013666A1 (en) * | 1989-05-11 | 1990-11-15 | Amersham International Plc | Sequencing method |
Non-Patent Citations (4)
Title |
---|
BioTechniques, vol. 5, no. 4, 1987, (Watick, Mass., US); C. Connell et al.: "Automated DNA sequence analysis", pages 342-348 * |
Nucleic Acids research, vol. 15, no. 7, 1987, J.N. Kremsky et al.: "Immobilization of DNA via oligonucleotides containing at aldehyde or carboxylic acid group at the 5' terminus", pages 2891-2909 * |
WPIL, File Supplier, AN = 90-105130 (14), Derwent Publications Ltd, (London, GB), & JP-A-2057978 (TAKARA SHUZO K.K.) 27 February 1990 * |
WPIL, File Supplier, AN = 90-250698 (33), Derwent Publications Ltd, (London, GB), & JP-A-2174700 (TAKARA SHUZO K.K.) 6 July 1990 * |
Cited By (1295)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5547839A (en) * | 1989-06-07 | 1996-08-20 | Affymax Technologies N.V. | Sequencing of surface immobilized polymers utilizing microflourescence detection |
US5902723A (en) * | 1989-06-07 | 1999-05-11 | Dower; William J. | Analysis of surface immobilized polymers utilizing microfluorescence detection |
US7056666B2 (en) | 1990-12-06 | 2006-06-06 | Affymetrix, Inc. | Analysis of surface immobilized polymers utilizing microfluorescence detection |
WO1992016657A1 (en) * | 1991-03-13 | 1992-10-01 | E.I. Du Pont De Nemours And Company | Method of identifying a nucleotide present at a defined position in a nucleic acid |
EP0514927A1 (en) * | 1991-05-24 | 1992-11-25 | Walter Gilbert | Method and apparatus for rapid nucleic acid sequencing |
WO1992020824A1 (en) * | 1991-05-24 | 1992-11-26 | Walter Gilbert | Method and apparatus for rapid nucleic acid sequencing |
US5516633A (en) * | 1991-08-15 | 1996-05-14 | Amersham Life Science, Inc. | DNA sequencing with a T7-type gene 6 exonuclease |
US6087095A (en) * | 1992-04-22 | 2000-07-11 | Medical Research Council | DNA sequencing method |
WO1993021340A1 (en) * | 1992-04-22 | 1993-10-28 | Medical Research Council | Dna sequencing method |
WO1993023564A1 (en) * | 1992-05-12 | 1993-11-25 | Cemubioteknik Ab | Method of sequencing dna |
US6238871B1 (en) | 1993-01-07 | 2001-05-29 | Sequenom, Inc. | DNA sequences by mass spectrometry |
US6194144B1 (en) | 1993-01-07 | 2001-02-27 | Sequenom, Inc. | DNA sequencing by mass spectrometry |
US5872003A (en) * | 1993-03-19 | 1999-02-16 | Sequenom, Inc. | DNA sequencing by mass spectrometry via exonuclease degradation |
US5851765A (en) * | 1993-03-19 | 1998-12-22 | Sequenon, Inc. | DNA sequencing by mass spectrometry via exonuclease degradation |
US5622824A (en) * | 1993-03-19 | 1997-04-22 | Sequenom, Inc. | DNA sequencing by mass spectrometry via exonuclease degradation |
WO1994023064A1 (en) * | 1993-03-26 | 1994-10-13 | Institut Pasteur | Novel derivatives for use in nucleic acid sequencing |
FR2703052A1 (en) * | 1993-03-26 | 1994-09-30 | Pasteur Institut | New method of nucleic acid sequencing. |
US7001722B1 (en) | 1993-06-22 | 2006-02-21 | Baylor College Of Medicine | Parallel primer extension approach to nucleic acid sequence analysis |
US6153379A (en) * | 1993-06-22 | 2000-11-28 | Baylor College Of Medicine | Parallel primer extension approach to nucleic acid sequence analysis |
EP1408122A3 (en) * | 1993-09-27 | 2004-10-06 | Arch Development Corporation | Methods and compositions for efficient nucleic acid sequencing |
EP1408122A2 (en) * | 1993-09-27 | 2004-04-14 | Arch Development Corporation | Methods and compositions for efficient nucleic acid sequencing |
WO1995009248A1 (en) * | 1993-09-27 | 1995-04-06 | Arch Development Corp. | Methods and compositions for efficient nucleic acid sequencing |
US7070927B2 (en) | 1993-09-27 | 2006-07-04 | University Of Chicago | Methods and compositions for efficient nucleic acid sequencing |
WO1995020053A1 (en) * | 1994-01-21 | 1995-07-27 | Medical Research Council | Sequencing of nucleic acids |
FR2718753A1 (en) * | 1994-04-15 | 1995-10-20 | Pasteur Institut | Determination of the number of oligo:nucleotide repeat units |
EP1724348A2 (en) | 1994-10-13 | 2006-11-22 | Solexa, Inc. | Molecular tagging system |
USRE43097E1 (en) | 1994-10-13 | 2012-01-10 | Illumina, Inc. | Massively parallel signature sequencing by ligation of encoded adaptors |
WO1996023807A1 (en) * | 1995-01-31 | 1996-08-08 | Marek Kwiatkowski | Novel chain terminators, the use thereof for nucleic acid sequencing and synthesis and a method of their preparation |
US6255475B1 (en) | 1995-01-31 | 2001-07-03 | Marek Kwiatkowski | Chain terminators, the use thereof for nucleic acid sequencing and synthesis and a method of their preparation |
WO1996027025A1 (en) * | 1995-02-27 | 1996-09-06 | Ely Michael Rabani | Device, compounds, algorithms, and methods of molecular characterization and manipulation with molecular parallelism |
EP0745686A1 (en) | 1995-06-01 | 1996-12-04 | Roche Diagnostics GmbH | The use of DNA polymerase 3'-intrinsic editing activity |
EP0745688A1 (en) * | 1995-06-01 | 1996-12-04 | Roche Diagnostics GmbH | The use of DNA polymerase having 3'-intrinsic editing activity |
US6210891B1 (en) | 1996-09-27 | 2001-04-03 | Pyrosequencing Ab | Method of sequencing DNA |
USRE44693E1 (en) | 1996-11-06 | 2014-01-07 | Sequenom, Inc. | Beads bound to a solid support and to nucleic acids |
USRE41005E1 (en) * | 1996-11-06 | 2009-11-24 | Sequenom, Inc. | Beads bound to a solid support and to nucleic acids |
US6258568B1 (en) | 1996-12-23 | 2001-07-10 | Pyrosequencing Ab | Method of sequencing DNA based on the detection of the release of pyrophosphate and enzymatic nucleotide degradation |
US10241026B2 (en) | 1997-03-14 | 2019-03-26 | Trustees Of Tufts College | Target analyte sensors utilizing microspheres |
US9377388B2 (en) | 1997-03-14 | 2016-06-28 | Trustees Of Tufts College | Methods for detecting target analytes and enzymatic reactions |
US9593328B2 (en) | 1997-04-01 | 2017-03-14 | Illumina, Inc. | Method of nucleic acid amplification |
EP1498494A2 (en) | 1997-04-01 | 2005-01-19 | Solexa Ltd. | Method of nucleic acid sequencing |
WO1998044151A1 (en) * | 1997-04-01 | 1998-10-08 | Glaxo Group Limited | Method of nucleic acid amplification |
US8143008B2 (en) | 1997-04-01 | 2012-03-27 | Illumina, Inc. | Method of nucleic acid amplification |
WO1998044152A1 (en) * | 1997-04-01 | 1998-10-08 | Glaxo Group Limited | Method of nucleic acid sequencing |
EP1591541A3 (en) * | 1997-04-01 | 2006-07-05 | Solexa Ltd. | Method of nucleic acid sequencing |
EP2327797A1 (en) * | 1997-04-01 | 2011-06-01 | Illumina Cambridge Limited | Method of nucleic acid sequencing |
US8476044B2 (en) | 1997-04-01 | 2013-07-02 | Illumina, Inc. | Method of nucleic acid amplification |
US8993271B2 (en) | 1997-04-01 | 2015-03-31 | Illumina, Inc. | Method of nucleic acid amplification |
EP3034626A1 (en) * | 1997-04-01 | 2016-06-22 | Illumina Cambridge Limited | Method of nucleic acid sequencing |
US9902951B2 (en) | 1997-04-01 | 2018-02-27 | Illumina, Inc. | Method of nucleic acid amplification |
EP1498494A3 (en) * | 1997-04-01 | 2007-06-20 | Solexa Ltd. | Method of nucleic acid sequencing |
US7985565B2 (en) | 1997-04-01 | 2011-07-26 | Illumina, Inc. | Method of nucleic acid amplification |
US9273354B2 (en) | 1997-05-23 | 2016-03-01 | Illumina, Inc. | System and apparatus for sequential processing of analytes |
US7008766B1 (en) | 1997-07-28 | 2006-03-07 | Medical Biosystems, Ltd. | Nucleic acid sequence analysis |
EP2267165A3 (en) * | 1997-07-28 | 2012-10-10 | Gen-Probe Incorporated | Nucleic acid sequence analysis |
WO1999005315A3 (en) * | 1997-07-28 | 1999-04-22 | Medical Biosystems Ltd | Nucleic acid sequence analysis |
WO1999005315A2 (en) * | 1997-07-28 | 1999-02-04 | Medical Biosystems Ltd. | Nucleic acid sequence analysis |
US9957561B2 (en) | 1998-05-01 | 2018-05-01 | Life Technologies Corporation | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US10214774B2 (en) | 1998-05-01 | 2019-02-26 | Life Technologies Corporation | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US20110294115A1 (en) * | 1998-05-01 | 2011-12-01 | Arizona Board Of Regents | Method of determining the nucleotide sequence of oligonucleotides and dna molecules |
US10208341B2 (en) | 1998-05-01 | 2019-02-19 | Life Technologies Corporation | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US6780591B2 (en) * | 1998-05-01 | 2004-08-24 | Arizona Board Of Regents | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US7875440B2 (en) * | 1998-05-01 | 2011-01-25 | Arizona Board Of Regents | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US9458500B2 (en) * | 1998-05-01 | 2016-10-04 | Life Technologies Corporation | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
WO1999057321A1 (en) * | 1998-05-01 | 1999-11-11 | Arizona Board Of Regents | Method of determining the nucleotide sequence of oligonucleotides and dna molecules |
US9540689B2 (en) | 1998-05-01 | 2017-01-10 | Life Technologies Corporation | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US7037687B2 (en) | 1998-05-01 | 2006-05-02 | Arizona Board Of Regents | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US9725764B2 (en) | 1998-05-01 | 2017-08-08 | Life Technologies Corporation | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US9096898B2 (en) | 1998-05-01 | 2015-08-04 | Life Technologies Corporation | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US9212393B2 (en) * | 1998-05-01 | 2015-12-15 | Life Technologies Corporation | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US8263365B2 (en) * | 1998-05-01 | 2012-09-11 | Arizona Board Of Regents | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US8652810B2 (en) | 1998-09-30 | 2014-02-18 | Illumina, Inc. | Methods of nucleic acid amplification and sequencing |
US10370652B2 (en) | 1998-09-30 | 2019-08-06 | Illumina, Inc. | Methods of nucleic acid amplification and sequencing |
US9297006B2 (en) | 1998-09-30 | 2016-03-29 | Illumina, Inc. | Methods of nucleic acid amplification and sequencing |
US6951742B1 (en) | 1998-11-16 | 2005-10-04 | Genway Biotech, Inc. | Methods and vectors for generating antibodies in avian species and uses therefor |
US9845501B2 (en) | 1998-12-14 | 2017-12-19 | Pacific of Biosciences of California, Inc. | System and methods for nucleic acid sequencing of single molecules by polymerase synthesis |
EP1141409A1 (en) * | 1998-12-14 | 2001-10-10 | Li-Cor, Inc. | A system and methods for nucleic acid sequencing of single molecules by polymerase synthesis |
US6762048B2 (en) | 1998-12-14 | 2004-07-13 | Li-Cor, Inc. | System and apparatus for nucleic acid sequencing of single molecules by polymerase synthesis |
EP1141409A4 (en) * | 1998-12-14 | 2003-02-26 | Li Cor Inc | A system and methods for nucleic acid sequencing of single molecules by polymerase synthesis |
US8192961B2 (en) | 1998-12-14 | 2012-06-05 | Pacific Biosciences Of California, Inc. | System and methods for nucleic acid sequencing of single molecules by polymerase synthesis |
US8530154B2 (en) | 1998-12-14 | 2013-09-10 | Pacific Biosciences Of California, Inc. | System and method for nucleic acid sequencing by polymerase synthesis |
US7229799B2 (en) | 1998-12-14 | 2007-06-12 | Li-Cor, Inc. | System and method for nucleic acid sequencing by polymerase synthesis |
US9458493B2 (en) | 1998-12-23 | 2016-10-04 | Empire Ip Llc | Sequencing method using magnifying tags |
US7270951B1 (en) | 1999-03-10 | 2007-09-18 | Asm Scientific, Inc. | Method for direct nucleic acid sequencing |
EP1961826A3 (en) * | 1999-03-10 | 2008-09-17 | ASM Scientific, Inc. | A method for direct nucleic acid sequencing |
WO2000053805A1 (en) * | 1999-03-10 | 2000-09-14 | Asm Scientific, Inc. | A method for direct nucleic acid sequencing |
WO2000058507A1 (en) * | 1999-03-30 | 2000-10-05 | Solexa Ltd. | Polynucleotide sequencing |
US9279148B2 (en) | 1999-04-20 | 2016-03-08 | Illumina, Inc. | Detection of nucleic acid reactions on bead arrays |
US9441267B2 (en) | 1999-04-20 | 2016-09-13 | Illumina, Inc. | Detection of nucleic acid reactions on bead arrays |
US9163283B2 (en) | 1999-05-20 | 2015-10-20 | Illumina, Inc. | Combinatorial decoding of random nucleic acid arrays |
US7960119B2 (en) | 1999-05-20 | 2011-06-14 | Illumina, Inc. | Combinatorial decoding of random nucleic acid arrays |
US8206917B2 (en) | 1999-05-20 | 2012-06-26 | Illumina, Inc. | Combinatorial decoding of random nucleic acid arrays |
US7501245B2 (en) | 1999-06-28 | 2009-03-10 | Helicos Biosciences Corp. | Methods and apparatuses for analyzing polynucleotide sequences |
US6908736B1 (en) | 1999-10-06 | 2005-06-21 | Medical Biosystems, Ltd. | DNA sequencing method |
US7939264B1 (en) | 1999-10-06 | 2011-05-10 | Gen-Probe Incorporated | DNA sequencing method |
WO2001048184A2 (en) * | 1999-12-23 | 2001-07-05 | Axaron Bioscience Ag | Method for carrying out the parallel sequencing of a nucleic acid mixture on a surface |
WO2001048184A3 (en) * | 1999-12-23 | 2002-05-16 | Axaron Bioscience Ag | Method for carrying out the parallel sequencing of a nucleic acid mixture on a surface |
US9850536B2 (en) | 2000-02-07 | 2017-12-26 | Illumina, Inc. | Multiplex nucleic acid reactions |
US10837059B2 (en) | 2000-02-07 | 2020-11-17 | Illumina, Inc. | Multiplex nucleic acid reactions |
US8906626B2 (en) | 2000-02-07 | 2014-12-09 | Illumina, Inc. | Multiplex nucleic acid reactions |
US6841128B2 (en) | 2000-03-17 | 2005-01-11 | Hitachi, Ltd. | DNA base sequencing system |
US7223568B2 (en) | 2000-03-30 | 2007-05-29 | Toyota Jidosha Kabushiki Kaisha | Methods for determining nucleotide sequences of single nucleic acid molecules |
WO2001073121A1 (en) * | 2000-03-30 | 2001-10-04 | Toyota Jidosha Kabushiki Kaisha | Method of determining base sequence of single nucleic acid molecule |
WO2001075154A3 (en) * | 2000-04-03 | 2003-01-03 | Axaron Bioscience Ag | Novel method for the parallel sequencing of a nucleic acid mixture on a surface |
WO2001075154A2 (en) * | 2000-04-03 | 2001-10-11 | Axaron Bioscience Ag | Novel method for the parallel sequencing of a nucleic acid mixture on a surface |
US7133782B2 (en) * | 2000-07-05 | 2006-11-07 | Ge Healthcare Uk Limited | Sequencing method and apparatus |
US20150197800A1 (en) * | 2000-10-06 | 2015-07-16 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding dna and rna |
US10407459B2 (en) | 2000-10-06 | 2019-09-10 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
US10457984B2 (en) | 2000-10-06 | 2019-10-29 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
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US9725480B2 (en) | 2000-10-06 | 2017-08-08 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
EP1337541A4 (en) * | 2000-10-06 | 2004-07-14 | Univ Columbia | Massive parallel method for decoding dna and rna |
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US7345159B2 (en) | 2000-10-06 | 2008-03-18 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
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US10407458B2 (en) | 2000-10-06 | 2019-09-10 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
US10648028B2 (en) | 2000-10-06 | 2020-05-12 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
US9719139B2 (en) | 2000-10-06 | 2017-08-01 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
US10633700B2 (en) | 2000-10-06 | 2020-04-28 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
US9718852B2 (en) | 2000-10-06 | 2017-08-01 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
EP3034627B1 (en) | 2000-10-06 | 2019-01-30 | The Trustees of Columbia University in the City of New York | Massive parallel method for decoding dna and rna |
US10428380B2 (en) | 2000-10-06 | 2019-10-01 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
US7635578B2 (en) | 2000-10-06 | 2009-12-22 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
US10669577B2 (en) | 2000-10-06 | 2020-06-02 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
US9243284B2 (en) | 2000-12-01 | 2016-01-26 | Life Technologies Corporation | Enzymatic nucleic acid synthesis: compositions and methods for inhibiting pyrophosphorolysis |
US7972820B2 (en) | 2000-12-08 | 2011-07-05 | Illumina Cambridge Limited | Isothermal amplification of nucleic acids on a solid support |
US7790418B2 (en) | 2000-12-08 | 2010-09-07 | Illumina Cambridge Limited | Isothermal amplification of nucleic acids on a solid support |
US10107804B2 (en) | 2001-03-23 | 2018-10-23 | Trustees Of Tufts College | Methods for detecting target analytes and enzymatic reactions |
US6653082B2 (en) | 2001-05-17 | 2003-11-25 | Baylor College Of Medicine | Substrate-bound cleavage assay for nucleic acid analysis |
WO2003020895A2 (en) * | 2001-08-28 | 2003-03-13 | Arizona Board Of Regents | Method of determining the nucleotide sequence of oligonucleotides and dna molecules |
WO2003020895A3 (en) * | 2001-08-28 | 2003-08-21 | Univ Arizona | Method of determining the nucleotide sequence of oligonucleotides and dna molecules |
US10519496B2 (en) | 2001-12-04 | 2019-12-31 | Illumina Cambridge Limited | Labelled nucleotides |
US7566537B2 (en) * | 2001-12-04 | 2009-07-28 | Illumina Cambridge Limited | Labelled nucleotides |
EP3858845A1 (en) * | 2001-12-04 | 2021-08-04 | Illumina Cambridge Limited | Labelled nucleotides |
US9121062B2 (en) | 2001-12-04 | 2015-09-01 | Illumina Cambridge Limited | Labelled nucleotides |
US9605310B2 (en) | 2001-12-04 | 2017-03-28 | Illumina Cambridge Limited | Labelled nucleotides |
US7772384B2 (en) | 2001-12-04 | 2010-08-10 | Illumina Cambridge Limited | Labelled nucleotides |
US7427673B2 (en) | 2001-12-04 | 2008-09-23 | Illumina Cambridge Limited | Labelled nucleotides |
US8158346B2 (en) | 2001-12-04 | 2012-04-17 | Illumina Cambridge Limited | Labelled nucleotides |
US9388463B2 (en) | 2001-12-04 | 2016-07-12 | Illumina Cambridge Limited | Labelled nucleotides |
US8148064B2 (en) | 2001-12-04 | 2012-04-03 | Illumina Cambridge Limited | Labelled nucleotides |
EP1451351B1 (en) | 2001-12-04 | 2017-02-01 | Illumina Cambridge Limited | Labelled nucleotides |
US8394586B2 (en) | 2001-12-04 | 2013-03-12 | Illumina Cambridge Limited | Labelled nucleotides |
US10480025B2 (en) | 2001-12-04 | 2019-11-19 | Illumina Cambridge Limited | Labelled nucleotides |
US9410200B2 (en) | 2001-12-04 | 2016-08-09 | Illumina Cambridge Limited | Labelled nucleotides |
EP2338893B1 (en) | 2001-12-04 | 2017-06-28 | Illumina Cambridge Limited | Labelled nucleotides |
EP3266791B1 (en) * | 2001-12-04 | 2021-01-27 | Illumina Cambridge Limited | Labelled nucleotides |
US7785796B2 (en) | 2001-12-04 | 2010-08-31 | Illumina Cambridge Limited | Labelled nucleotides |
US7291460B2 (en) | 2002-05-31 | 2007-11-06 | Verenium Corporation | Multiplexed systems for nucleic acid sequencing |
US8288156B2 (en) | 2002-06-21 | 2012-10-16 | Hitachi, Ltd. | Analytical chip and analyzer |
US7074597B2 (en) | 2002-07-12 | 2006-07-11 | The Trustees Of Columbia University In The City Of New York | Multiplex genotyping using solid phase capturable dideoxynucleotides and mass spectrometry |
US10487102B2 (en) | 2002-08-23 | 2019-11-26 | Illumina Cambridge Limited | Labelled nucleotides |
EP3147292B1 (en) | 2002-08-23 | 2018-09-26 | Illumina Cambridge Limited | Labelled nucleotides |
US11008359B2 (en) | 2002-08-23 | 2021-05-18 | Illumina Cambridge Limited | Labelled nucleotides |
US10513731B2 (en) | 2002-08-23 | 2019-12-24 | Illumina Cambridge Limited | Modified nucleotides |
US8084590B2 (en) | 2002-08-23 | 2011-12-27 | Illumina Cambridge Limited | Labelled nucleotides |
EP3363809B1 (en) | 2002-08-23 | 2020-04-08 | Illumina Cambridge Limited | Modified nucleotides for polynucleotide sequencing |
US8071739B2 (en) | 2002-08-23 | 2011-12-06 | Illumina Cambridge Limited | Modified nucleotides |
EP3587433A1 (en) * | 2002-08-23 | 2020-01-01 | Illumina Cambridge Limited | Modified nucleotides |
US9121060B2 (en) | 2002-08-23 | 2015-09-01 | Illumina Cambridge Limited | Modified nucleotides |
US9127314B2 (en) | 2002-08-23 | 2015-09-08 | Illumina Cambridge Limited | Labelled nucleotides |
US7795424B2 (en) | 2002-08-23 | 2010-09-14 | Illumina Cambridge Limited | Labelled nucleotides |
US9410199B2 (en) | 2002-08-23 | 2016-08-09 | Illumina Cambridge Limited | Labelled nucleotides |
EP3587433B1 (en) | 2002-08-23 | 2020-04-22 | Illumina Cambridge Limited | Modified nucleotides |
US7414116B2 (en) | 2002-08-23 | 2008-08-19 | Illumina Cambridge Limited | Labelled nucleotides |
EP3002289B1 (en) | 2002-08-23 | 2018-02-28 | Illumina Cambridge Limited | Modified nucleotides for polynucleotide sequencing |
US9388464B2 (en) | 2002-08-23 | 2016-07-12 | Illumina Cambridge Limited | Modified nucleotides |
US7541444B2 (en) | 2002-08-23 | 2009-06-02 | Illumina Cambridge Limited | Modified nucleotides |
EP2119722B1 (en) | 2002-08-23 | 2016-10-26 | Illumina Cambridge Limited | Labelled nucleotides |
US7771973B2 (en) | 2002-12-23 | 2010-08-10 | Illumina Cambridge Limited | Modified nucleotides |
US8597881B2 (en) | 2002-12-23 | 2013-12-03 | Illumina Cambridge Limited | Modified nucleotides |
US11028116B2 (en) | 2003-08-22 | 2021-06-08 | Illumina Cambridge Limited | Labelled nucleotides |
US10995111B2 (en) | 2003-08-22 | 2021-05-04 | Illumina Cambridge Limited | Labelled nucleotides |
US11028115B2 (en) | 2003-08-22 | 2021-06-08 | Illumina Cambridge Limited | Labelled nucleotides |
WO2005044836A2 (en) | 2003-11-05 | 2005-05-19 | Genovoxx Gmbh | Macromolecular nucleotide compounds and methods for using the same |
US9012144B2 (en) | 2003-11-12 | 2015-04-21 | Fluidigm Corporation | Short cycle methods for sequencing polynucleotides |
US7897345B2 (en) | 2003-11-12 | 2011-03-01 | Helicos Biosciences Corporation | Short cycle methods for sequencing polynucleotides |
US9657344B2 (en) | 2003-11-12 | 2017-05-23 | Fluidigm Corporation | Short cycle methods for sequencing polynucleotides |
US7981604B2 (en) | 2004-02-19 | 2011-07-19 | California Institute Of Technology | Methods and kits for analyzing polynucleotide sequences |
US7622279B2 (en) | 2004-03-03 | 2009-11-24 | The Trustees Of Columbia University In The City Of New York | Photocleavable fluorescent nucleotides for DNA sequencing on chip constructed by site-specific coupling chemistry |
EP1790202A2 (en) * | 2004-09-17 | 2007-05-30 | Pacific Biosciences of California, Inc. | Apparatus and method for analysis of molecules |
EP1790202A4 (en) * | 2004-09-17 | 2013-02-20 | Pacific Biosciences California | Apparatus and method for analysis of molecules |
EP1844328A2 (en) * | 2005-01-31 | 2007-10-17 | Pacific Biosciences of California, Inc. | Use of reversible extension terminator in nucleic acid sequencing |
EP1844328A4 (en) * | 2005-01-31 | 2009-09-16 | Pacific Biosciences California | Use of reversible extension terminator in nucleic acid sequencing |
EP2316977A1 (en) | 2005-02-01 | 2011-05-04 | AB Advanced Genetic Analysis Corporation | Reagents, methods and libraries for bead-based amflication |
EP2272983A1 (en) | 2005-02-01 | 2011-01-12 | AB Advanced Genetic Analysis Corporation | Reagents, methods and libraries for bead-based sequencing |
EP2230316A1 (en) | 2005-02-01 | 2010-09-22 | AB Advanced Genetic Analysis Corporation | Nucleic acid sequencing by performing successive cycles of duplex extension |
EP2230315A1 (en) | 2005-02-01 | 2010-09-22 | AB Advanced Genetic Analysis Corporation | Nucleic acid sequencing by performing successive cycles of duplex extension |
EP2233582A1 (en) | 2005-02-01 | 2010-09-29 | AB Advanced Genetic Analysis Corporation | Nucleic acid sequencing by performing successive cycles of duplex extension |
EP2233581A1 (en) | 2005-02-01 | 2010-09-29 | AB Advanced Genetic Analysis Corporation | Nucleic acid sequencing by performing successive cycles of duplex extension |
US8431691B2 (en) | 2005-02-01 | 2013-04-30 | Applied Biosystems Llc | Reagents, methods, and libraries for bead-based sequencing |
US10323277B2 (en) | 2005-02-01 | 2019-06-18 | Applied Biosystems, Llc | Reagents, methods, and libraries for bead-based sequencing |
EP2233583A1 (en) | 2005-02-01 | 2010-09-29 | AB Advanced Genetic Analysis Corporation | Nucleic acid sequencing by performing successive cycles of duplex extension |
EP2236628A2 (en) | 2005-02-01 | 2010-10-06 | AB Advanced Genetic Analysis Corporation | Reagents, methods and libraries for bead-based sequencing |
EP2239342A2 (en) | 2005-02-01 | 2010-10-13 | AB Advanced Genetic Analysis Corporation | Reagents, methods and libraries for bead-based sequencing |
EP2857523A1 (en) | 2005-02-01 | 2015-04-08 | Applied Biosystems, LLC | Method for identifying a sequence in a polynucleotide |
EP2241637A1 (en) | 2005-02-01 | 2010-10-20 | AB Advanced Genetic Analysis Corporation | Nucleic acid sequencing by performing successive cycles of duplex extension |
EP2003214A2 (en) | 2005-02-01 | 2008-12-17 | AB Advanced Genetic Analysis Corporation | Reagents, methods, and libraries for bead-based sequencing |
US9493830B2 (en) | 2005-02-01 | 2016-11-15 | Applied Biosystems, Llc | Reagents, methods, and libraries for bead-based sequencing |
US9217177B2 (en) | 2005-02-01 | 2015-12-22 | Applied Biosystems, Llc | Methods for bead-based sequencing |
US9169510B2 (en) | 2005-06-21 | 2015-10-27 | The Trustees Of Columbia University In The City Of New York | Pyrosequencing methods and related compositions |
US9909177B2 (en) | 2005-06-21 | 2018-03-06 | The Trustees Of Columbia University In The City Of New York | Pyrosequencing methods and related compositions |
US7805081B2 (en) | 2005-08-11 | 2010-09-28 | Pacific Biosciences Of California, Inc. | Methods and systems for monitoring multiple optical signals from a single source |
US7592435B2 (en) | 2005-08-19 | 2009-09-22 | Illumina Cambridge Limited | Modified nucleosides and nucleotides and uses thereof |
US8212015B2 (en) | 2005-08-19 | 2012-07-03 | Illumina Cambridge Limited | Modified nucleosides and nucleotides and uses thereof |
US7816503B2 (en) | 2005-08-19 | 2010-10-19 | Illumina Cambridge Limited | Modified nucleosides and nucleotides and uses thereof |
US9868978B2 (en) | 2005-08-26 | 2018-01-16 | Fluidigm Corporation | Single molecule sequencing of captured nucleic acids |
US7666593B2 (en) | 2005-08-26 | 2010-02-23 | Helicos Biosciences Corporation | Single molecule sequencing of captured nucleic acids |
US7405281B2 (en) | 2005-09-29 | 2008-07-29 | Pacific Biosciences Of California, Inc. | Fluorescent nucleotide analogs and uses therefor |
US7777013B2 (en) | 2005-09-29 | 2010-08-17 | Pacific Biosciences Of California, Inc. | Labeled nucleotide analogs and uses therefor |
US8058031B2 (en) | 2005-09-29 | 2011-11-15 | Pacific Biosciences Of California, Inc. | Labeled nucleotide analogs and uses therefor |
US7993891B2 (en) | 2005-09-30 | 2011-08-09 | Pacific Biosciences Of California, Inc. | Method for binding reactive groups in observation area of zero mode waveguide |
US8137942B2 (en) | 2005-09-30 | 2012-03-20 | Pacific Biosciences Of California, Inc. | Method of preparing a modified surface |
US7763423B2 (en) | 2005-09-30 | 2010-07-27 | Pacific Biosciences Of California, Inc. | Substrates having low density reactive groups for monitoring enzyme activity |
US8796432B2 (en) | 2005-10-31 | 2014-08-05 | The Trustees Of Columbia University In The City Of New York | Chemically cleavable 3'-o-allyl-DNTP-allyl-fluorophore fluorescent nucleotide analogues and related methods |
US9297042B2 (en) | 2005-10-31 | 2016-03-29 | The Trustees Of Columbia University In The City Of New York | Chemically cleavable 3′-O-allyl-dNTP-allyl-fluorophore fluorescent nucleotide analogues and related methods |
US9255292B2 (en) | 2005-10-31 | 2016-02-09 | The Trustees Of Columbia University In The City Of New York | Synthesis of four-color 3′-O-allyl modified photocleavable fluorescent nucleotides and related methods |
US10907194B2 (en) | 2005-10-31 | 2021-02-02 | The Trustees Of Columbia University In The City Of New York | Synthesis of four-color 3′-O-allyl modified photocleavable fluorescent nucleotides and related methods |
US11142789B2 (en) | 2005-11-01 | 2021-10-12 | Illumina Cambridge Limited | Method of preparing libraries of template polynucleotides |
US8563478B2 (en) | 2005-11-01 | 2013-10-22 | Illumina Cambridge Limited | Method of preparing libraries of template polynucleotides |
US7741463B2 (en) | 2005-11-01 | 2010-06-22 | Illumina Cambridge Limited | Method of preparing libraries of template polynucleotides |
US9376678B2 (en) | 2005-11-01 | 2016-06-28 | Illumina Cambridge Limited | Method of preparing libraries of template polynucleotides |
US10253359B2 (en) | 2005-11-01 | 2019-04-09 | Illumina Cambridge Limited | Method of preparing libraries of template polynucleotides |
US8168388B2 (en) | 2005-11-25 | 2012-05-01 | Illumina Cambridge Ltd | Preparation of nucleic acid templates for solid phase amplification |
US8071346B2 (en) | 2005-12-02 | 2011-12-06 | Pacific Bioscience Of California, Inc. | System for the mitigation of photodamage in analytical reactions |
US7993895B2 (en) | 2005-12-02 | 2011-08-09 | Pacific Biosciences Of California, Inc. | Mitigation of photodamage in analytical reactions |
US7998717B2 (en) | 2005-12-02 | 2011-08-16 | Pacific Biosciences Of California, Inc. | Mitigation of photodamage in analytical reactions |
US8415128B2 (en) | 2005-12-02 | 2013-04-09 | Pacific Biosciences Of California, Inc. | Mitigation of photodamage in analytical reactions |
US7995202B2 (en) | 2006-02-13 | 2011-08-09 | Pacific Biosciences Of California, Inc. | Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources |
US7630073B2 (en) | 2006-02-13 | 2009-12-08 | Pacific Biosciences Of California | Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources |
US7961314B2 (en) | 2006-02-13 | 2011-06-14 | Pacific Biosciences Of California, Inc. | Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources |
US8264687B2 (en) | 2006-02-13 | 2012-09-11 | Pacific Biosciences Of California, Inc. | Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources |
US8149399B2 (en) | 2006-02-13 | 2012-04-03 | Pacific Biosciences Of California, Inc. | Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources |
US7715001B2 (en) | 2006-02-13 | 2010-05-11 | Pacific Biosciences Of California, Inc. | Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources |
US7692783B2 (en) | 2006-02-13 | 2010-04-06 | Pacific Biosciences Of California | Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources |
US7626704B2 (en) | 2006-02-13 | 2009-12-01 | Pacific Biosciences Of California, Inc. | Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources |
US11186871B2 (en) | 2006-03-30 | 2021-11-30 | Pacific Biosciences Of California, Inc. | Articles having localized molecules disposed thereon and methods of producing same |
US8802600B2 (en) | 2006-03-30 | 2014-08-12 | Pacific Biosciences Of California, Inc. | Articles having localized molecules disposed thereon and methods of producing same |
US8193123B2 (en) | 2006-03-30 | 2012-06-05 | Pacific Biosciences Of California, Inc. | Articles having localized molecules disposed thereon and methods of producing same |
US9944980B2 (en) | 2006-03-30 | 2018-04-17 | Pacific Biosciences Of California, Inc. | Articles having localized molecules disposed thereon and methods of producing same |
US8772202B2 (en) | 2006-03-30 | 2014-07-08 | Pacific Biosciences Of California, Inc. | Articles having localized molecules disposed thereon and methods of producing same |
US8975216B2 (en) | 2006-03-30 | 2015-03-10 | Pacific Biosciences Of California | Articles having localized molecules disposed thereon and methods of producing same |
US10655172B2 (en) | 2006-03-30 | 2020-05-19 | Pacific Biosciences Of California, Inc. | Articles having localized molecules disposed thereon and methods of producing same |
US7563574B2 (en) | 2006-03-31 | 2009-07-21 | Pacific Biosciences Of California, Inc. | Methods, systems and compositions for monitoring enzyme activity and applications thereof |
USRE49362E1 (en) | 2006-05-18 | 2023-01-10 | Illumina Cambridge Limited | Dye compounds and the use of their labelled conjugates |
US8889348B2 (en) | 2006-06-07 | 2014-11-18 | The Trustees Of Columbia University In The City Of New York | DNA sequencing by nanopore using modified nucleotides |
US8053742B2 (en) | 2006-09-01 | 2011-11-08 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
US8471230B2 (en) | 2006-09-01 | 2013-06-25 | Pacific Biosciences Of California, Inc. | Waveguide substrates and optical systems and methods of use thereof |
US8207509B2 (en) | 2006-09-01 | 2012-06-26 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
US8618507B1 (en) | 2006-09-01 | 2013-12-31 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
US9029802B2 (en) | 2006-09-01 | 2015-05-12 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
US7834329B2 (en) | 2006-09-01 | 2010-11-16 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
US7838847B2 (en) | 2006-09-01 | 2010-11-23 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
US8471219B2 (en) | 2006-09-01 | 2013-06-25 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
US9222133B2 (en) | 2006-09-01 | 2015-12-29 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
US7820983B2 (en) | 2006-09-01 | 2010-10-26 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
US9587276B2 (en) | 2006-09-01 | 2017-03-07 | Pacific Biosciences Of California, Inc. | Substrates, systems and methods for analyzing materials |
US9469873B2 (en) | 2006-09-28 | 2016-10-18 | Illumina, Inc. | Compositions and methods for nucleotide sequencing |
US9051612B2 (en) | 2006-09-28 | 2015-06-09 | Illumina, Inc. | Compositions and methods for nucleotide sequencing |
US8399188B2 (en) | 2006-09-28 | 2013-03-19 | Illumina, Inc. | Compositions and methods for nucleotide sequencing |
US8808988B2 (en) | 2006-09-28 | 2014-08-19 | Illumina, Inc. | Compositions and methods for nucleotide sequencing |
US7883869B2 (en) | 2006-12-01 | 2011-02-08 | The Trustees Of Columbia University In The City Of New York | Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators |
US9528151B2 (en) | 2006-12-01 | 2016-12-27 | The Trustees Of Columbia University In The City Of New York | Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators |
US11939631B2 (en) | 2006-12-01 | 2024-03-26 | The Trustees Of Columbia University In The City Of New York | Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators |
US11098353B2 (en) | 2006-12-01 | 2021-08-24 | The Trustees Of Columbia University In The City Of New York | Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators |
US10457985B2 (en) | 2007-02-02 | 2019-10-29 | Illumina Cambridge Limited | Methods for indexing samples and sequencing multiple polynucleotide templates |
US8053192B2 (en) | 2007-02-02 | 2011-11-08 | Illumina Cambridge Ltd. | Methods for indexing samples and sequencing multiple polynucleotide templates |
US8182989B2 (en) | 2007-02-02 | 2012-05-22 | Illumina Cambridge Ltd. | Methods for indexing samples and sequencing multiple polynucleotide templates |
US11634768B2 (en) | 2007-02-02 | 2023-04-25 | Illumina Cambridge Limited | Methods for indexing samples and sequencing multiple polynucleotide templates |
US8822150B2 (en) | 2007-02-02 | 2014-09-02 | Illumina Cambridge Limited | Methods for indexing samples and sequencing multiple polynucleotide templates |
US9512478B2 (en) | 2007-02-02 | 2016-12-06 | Illumina Cambridge Limited | Methods for indexing samples and sequencing multiple polynucleotide templates |
US10988806B2 (en) | 2007-02-02 | 2021-04-27 | Illumina Cambridge Limited | Methods for indexing samples and sequencing multiple polynucleotide templates |
US11940413B2 (en) | 2007-02-05 | 2024-03-26 | IsoPlexis Corporation | Methods and devices for sequencing nucleic acids in smaller batches |
US8551704B2 (en) | 2007-02-16 | 2013-10-08 | Pacific Biosciences Of California, Inc. | Controllable strand scission of mini circle DNA |
US8535882B2 (en) | 2007-07-26 | 2013-09-17 | Pacific Biosciences Of California, Inc. | Molecular redundant sequencing |
US9732383B2 (en) | 2007-07-26 | 2017-08-15 | Pacific Biosciences Of California, Inc. | Molecular redundant sequencing |
US7901889B2 (en) | 2007-07-26 | 2011-03-08 | Pacific Biosciences Of California, Inc. | Molecular redundant sequencing |
EP2657869A2 (en) | 2007-08-29 | 2013-10-30 | Applied Biosystems, LLC | Alternative nucleic acid sequencing methods |
US7960116B2 (en) | 2007-09-28 | 2011-06-14 | Pacific Biosciences Of California, Inc. | Nucleic acid sequencing methods and systems |
US8304191B2 (en) | 2007-09-28 | 2012-11-06 | Pacific Biosciences Of California, Inc. | Nucleic acid sequencing methods and systems |
US8003330B2 (en) | 2007-09-28 | 2011-08-23 | Pacific Biosciences Of California, Inc. | Error-free amplification of DNA for clonal sequencing |
US10260094B2 (en) | 2007-10-19 | 2019-04-16 | The Trustees Of Columbia University In The City Of New York | DNA sequencing with non-fluorescent nucleotide reversible terminators and cleavable label modified nucleotide terminators |
US9670539B2 (en) | 2007-10-19 | 2017-06-06 | The Trustees Of Columbia University In The City Of New York | Synthesis of cleavable fluorescent nucleotides as reversible terminators for DNA sequencing by synthesis |
US9175342B2 (en) | 2007-10-19 | 2015-11-03 | The Trustees Of Columbia University In The City Of New York | Synthesis of cleavable fluorescent nucleotides as reversible terminators for DNA sequencing by synthesis |
US11242561B2 (en) | 2007-10-19 | 2022-02-08 | The Trustees Of Columbia University In The City Of New York | DNA sequencing with non-fluorescent nucleotide reversible terminators and cleavable label modified nucleotide terminators |
US9115163B2 (en) | 2007-10-19 | 2015-08-25 | The Trustees Of Columbia University In The City Of New York | DNA sequence with non-fluorescent nucleotide reversible terminators and cleavable label modified nucleotide terminators |
US10144961B2 (en) | 2007-10-19 | 2018-12-04 | The Trustees Of Columbia University In The City Of New York | Synthesis of cleavable fluorescent nucleotides as reversible terminators for DNA sequencing by synthesis |
US11208691B2 (en) | 2007-10-19 | 2021-12-28 | The Trustees Of Columbia University In The City Of New York | Synthesis of cleavable fluorescent nucleotides as reversible terminators for DNA sequencing by synthesis |
US8715938B2 (en) | 2007-11-20 | 2014-05-06 | Life Technologies Corporation | Reversible di-nucleotide terminator sequencing |
US8017338B2 (en) | 2007-11-20 | 2011-09-13 | Life Technologies Corporation | Reversible di-nucleotide terminator sequencing |
US8802424B2 (en) | 2008-01-10 | 2014-08-12 | Pacific Biosciences Of California, Inc. | Methods and systems for analysis of fluorescent reactions with modulated excitation |
US11214832B2 (en) | 2008-01-28 | 2022-01-04 | Complete Genomics, Inc. | Methods and compositions for efficient base calling in sequencing reactions |
US11098356B2 (en) | 2008-01-28 | 2021-08-24 | Complete Genomics, Inc. | Methods and compositions for nucleic acid sequencing |
US10662473B2 (en) | 2008-01-28 | 2020-05-26 | Complete Genomics, Inc. | Methods and compositions for efficient base calling in sequencing reactions |
US8252911B2 (en) | 2008-02-12 | 2012-08-28 | Pacific Biosciences Of California, Inc. | Compositions and methods for use in analytical reactions |
US9910956B2 (en) | 2008-03-28 | 2018-03-06 | Pacific Biosciences Of California, Inc. | Sequencing using concatemers of copies of sense and antisense strands |
US9556480B2 (en) | 2008-03-28 | 2017-01-31 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
US8535886B2 (en) | 2008-03-28 | 2013-09-17 | Pacific Biosciences Of California, Inc. | Methods and compositions for nucleic acid sample preparation |
US9582640B2 (en) | 2008-03-28 | 2017-02-28 | Pacific Biosciences Of California, Inc. | Methods for obtaining a single molecule consensus sequence |
US8455193B2 (en) | 2008-03-28 | 2013-06-04 | Pacific Biosciences Of California, Inc. | Compositions and methods for nucleic acid sequencing |
US8153375B2 (en) | 2008-03-28 | 2012-04-10 | Pacific Biosciences Of California, Inc. | Compositions and methods for nucleic acid sequencing |
US9542527B2 (en) | 2008-03-28 | 2017-01-10 | Pacific Biosciences Of California, Inc. | Compositions and methods for nucleic acid sequencing |
US9404146B2 (en) | 2008-03-28 | 2016-08-02 | Pacific Biosciences Of California, Inc. | Compositions and methods for nucleic acid sequencing |
US9600626B2 (en) | 2008-03-28 | 2017-03-21 | Pacific Biosciences Of California, Inc. | Methods and systems for obtaining a single molecule consensus sequence |
US11705217B2 (en) | 2008-03-28 | 2023-07-18 | Pacific Biosciences Of California, Inc. | Sequencing using concatemers of copies of sense and antisense strands |
US9057102B2 (en) | 2008-03-28 | 2015-06-16 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
US8236499B2 (en) | 2008-03-28 | 2012-08-07 | Pacific Biosciences Of California, Inc. | Methods and compositions for nucleic acid sample preparation |
US8309330B2 (en) | 2008-03-28 | 2012-11-13 | Pacific Biosciences Of California, Inc. | Diagnostic sequencing with small nucleic acid circles |
US9738929B2 (en) | 2008-03-28 | 2017-08-22 | Pacific Biosciences Of California, Inc. | Nucleic acid sequence analysis |
WO2009151921A1 (en) | 2008-05-27 | 2009-12-17 | Trilink Biotechnologies | Chemically modified nucleoside 5'-triphosphates for thermally initiated amplification of nucleic acid |
US8133669B2 (en) | 2008-05-27 | 2012-03-13 | Trilink Biotechnologies | Chemically modified nucleoside 5′-triphosphates for thermally initiated amplification of nucleic acid |
US8198023B2 (en) | 2008-08-05 | 2012-06-12 | Pacific Biosciences Of California, Inc. | Prevention and alleviation of steric hindrance during single molecule nucleic acid synthesis by a polymerase |
US8835135B2 (en) | 2008-08-05 | 2014-09-16 | Pacific Biosciences Of California, Inc. | Reaction mixtures for prevention and alleviation of steric hindrance during single molecule synthesis |
US8795961B2 (en) | 2008-09-05 | 2014-08-05 | Pacific Biosciences Of California, Inc. | Preparations, compositions, and methods for nucleic acid sequencing |
US10577601B2 (en) | 2008-09-12 | 2020-03-03 | University Of Washington | Error detection in sequence tag directed subassemblies of short sequencing reads |
US10227585B2 (en) | 2008-09-12 | 2019-03-12 | University Of Washington | Sequence tag directed subassembly of short sequencing reads into long sequencing reads |
US11505795B2 (en) | 2008-09-12 | 2022-11-22 | University Of Washington | Error detection in sequence tag directed sequencing reads |
US10968482B2 (en) | 2008-09-16 | 2021-04-06 | Pacific Biosciences Of California, Inc. | Substrates and optical systems and methods of use thereof for performing sequencing by synthesis |
US8274040B2 (en) | 2008-09-16 | 2012-09-25 | Pacific Biosciences Of California, Inc. | Substrates and optical system having at least one optical waveguide, at least one nanometer-scale aperture and at least one lens array and methods of use thereof |
US9222123B2 (en) | 2008-09-16 | 2015-12-29 | Pacific Biosciences Of California, Inc. | Analytic devices comprising optical waveguides and nanometer-scale apertures and methods of uses thereof |
US9719138B2 (en) | 2008-09-16 | 2017-08-01 | Pacific Biosciences Of California, Inc. | Substrates and optical systems and methods of use thereof having a single optically resolvable immobilized reaction component disposed within a nanometer-scale aperture |
US10280457B2 (en) | 2008-09-16 | 2019-05-07 | Pacific Biosciences Of California, Inc. | Substrates and optical systems having a waveguide, nanometer-scale apertures, a lens array, and sensing regions and methods of use thereof |
US10697012B2 (en) | 2008-09-16 | 2020-06-30 | Pacific Biosciences Of California, Inc. | Analytic device comprising a nanohole extending through an opaque mask layer and into a waveguide cladding |
US11560591B2 (en) | 2008-09-16 | 2023-01-24 | Pacific Biosciences Of California, Inc. | Analytic device comprising a substrate, nanometer-scale wells, and shallow waveguide optically coupled to a deep waveguide |
US9551028B2 (en) | 2008-09-19 | 2017-01-24 | Pacific Biosciences Of California, Inc. | Nucleic acid sequence analysis |
US8481264B2 (en) | 2008-09-19 | 2013-07-09 | Pacific Biosciences Of California, Inc. | Immobilized nucleic acid complexes for sequence analysis |
US8921046B2 (en) | 2008-09-19 | 2014-12-30 | Pacific Biosciences Of California, Inc. | Nucleic acid sequence analysis |
US10563255B2 (en) | 2008-09-24 | 2020-02-18 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
US11214830B2 (en) | 2008-09-24 | 2022-01-04 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
US8143030B2 (en) | 2008-09-24 | 2012-03-27 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
US8383369B2 (en) | 2008-09-24 | 2013-02-26 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
US8628940B2 (en) | 2008-09-24 | 2014-01-14 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
US8728764B2 (en) | 2008-10-02 | 2014-05-20 | Illumina Cambridge Limited | Nucleic acid sample enrichment for sequencing applications |
US11866780B2 (en) | 2008-10-02 | 2024-01-09 | Illumina Cambridge Limited | Nucleic acid sample enrichment for sequencing applications |
US9702002B2 (en) | 2008-10-02 | 2017-07-11 | Illumina, Inc. | Nucleic acid sample enrichment for sequencing applications |
US10174372B2 (en) | 2008-10-22 | 2019-01-08 | Illumina, Inc. | Preservation of information related to genomic DNA methylation |
US8895268B2 (en) | 2008-10-22 | 2014-11-25 | Illumina, Inc. | Preservation of information related to genomic DNA methylation |
US8541207B2 (en) | 2008-10-22 | 2013-09-24 | Illumina, Inc. | Preservation of information related to genomic DNA methylation |
US9605311B2 (en) | 2008-10-22 | 2017-03-28 | Illumina, Inc. | Tandem sequencing top and bottom strands of double stranded nucleic acid using arrays configured for single molecule detection |
WO2010048337A2 (en) | 2008-10-22 | 2010-04-29 | Illumina, Inc. | Preservation of information related to genomic dna methylation |
US9677068B2 (en) | 2008-11-03 | 2017-06-13 | The Regents Of The University Of California | Methods for detecting modification resistant nucleic acids |
US9284547B2 (en) | 2008-11-03 | 2016-03-15 | The Regents Of The University Of California | Methods for detecting modification resistant nucleic acids |
US8486865B2 (en) | 2008-11-03 | 2013-07-16 | The Regents Of The University Of California | Methods for detecting modification resistant nucleic acids |
WO2010062775A2 (en) | 2008-11-03 | 2010-06-03 | The Regents Of The University Of California | Methods for detecting modification resistant nucleic acids |
US10745750B2 (en) | 2008-11-19 | 2020-08-18 | Pacific Biosciences Of California, Inc. | Modular nucleotide compositions and uses therefor |
US10161002B2 (en) | 2008-11-19 | 2018-12-25 | Pacific Biosciences Of California, Inc. | Modular nucleotide compositions and uses therefor |
US8252910B2 (en) | 2008-11-19 | 2012-08-28 | Pacific Biosciences Of California, Inc. | Modular nucleotide compositions and uses therefor |
US8846881B2 (en) | 2008-11-19 | 2014-09-30 | Pacific Biosciences Of California, Inc. | Modular nucleotide compositions and uses therefor |
US9879319B2 (en) | 2008-11-19 | 2018-01-30 | Pacific Biosciences Of California, Inc. | Modular nucleotide compositions and uses therefor |
US9551031B2 (en) | 2008-11-19 | 2017-01-24 | Pacific Biosciences Of California, Inc. | Modular nucleotide compositions and uses therefor |
US8370079B2 (en) | 2008-11-20 | 2013-02-05 | Pacific Biosciences Of California, Inc. | Algorithms for sequence determination |
US8993230B2 (en) | 2008-12-04 | 2015-03-31 | Pacific Biosciences of Californ, Inc. | Asynchronous sequencing of biological polymers |
US9175341B2 (en) | 2008-12-11 | 2015-11-03 | Pacific Biosciences Of California, Inc. | Methods for identifying nucleic acid modifications |
US11844666B2 (en) | 2008-12-11 | 2023-12-19 | Pacific Biosciences Of California, Inc. | Classification of nucleic acid templates |
US9951383B2 (en) | 2008-12-11 | 2018-04-24 | Pacific Biosciences Of California, Inc. | Methods of sequencing and identifying the position of a modified base in a nucleic acid |
US10793903B2 (en) | 2008-12-11 | 2020-10-06 | Pacific Biosciences Of California, Inc. | Identifying organisms in a sample using sequencing kinetic signatures |
US10294523B2 (en) | 2008-12-11 | 2019-05-21 | Pacific Biosciences Of California, Inc. | Identification of nucleic acid template-linked barcodes comprising nucleic acid modifications |
US8476022B2 (en) | 2008-12-23 | 2013-07-02 | Illumina, Inc. | Method of making an array of nucleic acid colonies |
US9005929B2 (en) | 2008-12-23 | 2015-04-14 | Illumina, Inc. | Multibase delivery for long reads in sequencing by synthesis protocols |
US8709729B2 (en) | 2008-12-23 | 2014-04-29 | Illumina, Inc. | Method of making an array of nucleic acid colonies |
US9416415B2 (en) | 2008-12-23 | 2016-08-16 | Illumina, Inc. | Method of sequencing nucleic acid colonies formed on a surface by re-seeding |
US8236532B2 (en) | 2008-12-23 | 2012-08-07 | Illumina, Inc. | Multibase delivery for long reads in sequencing by synthesis protocols |
US10167506B2 (en) | 2008-12-23 | 2019-01-01 | Illumina, Inc. | Method of sequencing nucleic acid colonies formed on a patterned surface by re-seeding |
EP2607496A1 (en) | 2008-12-23 | 2013-06-26 | Illumina, Inc. | Methods useful in nucleic acid sequencing protocols |
US10093973B2 (en) | 2009-03-27 | 2018-10-09 | Life Technologies Corporation | Polymerase compositions and methods |
US11542549B2 (en) | 2009-03-27 | 2023-01-03 | Life Technologies Corporation | Labeled enzyme compositions, methods and systems |
US11015220B2 (en) | 2009-03-27 | 2021-05-25 | Life Technologies Corporation | Conjugates of biomolecules to nanoparticles |
US9567629B2 (en) | 2009-03-27 | 2017-02-14 | Life Technologies Corporation | Labeled enzyme compositions, methods and systems |
US11008612B2 (en) | 2009-03-27 | 2021-05-18 | Life Technologies Corporation | Methods and apparatus for single molecule sequencing using energy transfer detection |
US9695471B2 (en) | 2009-03-27 | 2017-07-04 | Life Technologies Corporation | Methods and apparatus for single molecule sequencing using energy transfer detection |
US9365838B2 (en) | 2009-03-27 | 2016-06-14 | Life Technologies Corporation | Conjugates of biomolecules to nanoparticles |
US9365839B2 (en) | 2009-03-27 | 2016-06-14 | Life Technologies Corporation | Polymerase compositions and methods |
US9932573B2 (en) | 2009-03-27 | 2018-04-03 | Life Technologies Corporation | Labeled enzyme compositions, methods and systems |
US10093974B2 (en) | 2009-03-27 | 2018-10-09 | Life Technologies Corporation | Methods and apparatus for single molecule sequencing using energy transfer detection |
US10093972B2 (en) | 2009-03-27 | 2018-10-09 | Life Technologies Corporation | Conjugates of biomolecules to nanoparticles |
US11453909B2 (en) | 2009-03-27 | 2022-09-27 | Life Technologies Corporation | Polymerase compositions and methods |
US9200320B2 (en) | 2009-04-27 | 2015-12-01 | Pacific Biosciences Of California, Inc. | Real-time sequencing methods and systems |
US8940507B2 (en) | 2009-04-27 | 2015-01-27 | Pacific Biosciences Of California, Inc. | Real-time sequencing methods and systems |
US8501405B2 (en) | 2009-04-27 | 2013-08-06 | Pacific Biosciences Of California, Inc. | Real-time sequencing methods and systems |
US9765310B2 (en) | 2009-06-05 | 2017-09-19 | Life Technologies Corporation | Nucleotide transient binding for sequencing methods |
US10597642B2 (en) | 2009-06-05 | 2020-03-24 | Life Technologies Corporation | Nucleotide transient binding for sequencing methods |
US11447756B2 (en) | 2009-06-05 | 2022-09-20 | Life Technologies Corporation | Nucleotide transient binding for sequencing methods |
US8632975B2 (en) | 2009-06-05 | 2014-01-21 | Life Technologies Corporation | Nucleotide transient binding for sequencing methods |
US9593315B2 (en) | 2009-06-05 | 2017-03-14 | Life Technologies Corporation | Mutant RB69 DNA polymerase |
US9255258B2 (en) | 2009-06-05 | 2016-02-09 | Life Technologies Corporation | Nucleotide transient binding for sequencing methods |
US10336991B2 (en) | 2009-06-05 | 2019-07-02 | Life Technologies Corporation | Mutant RB69 DNA polymerase |
US8703461B2 (en) | 2009-06-05 | 2014-04-22 | Life Technologies Corporation | Mutant RB69 DNA polymerase |
US9399767B2 (en) | 2009-06-05 | 2016-07-26 | Lift Technologies Corporation | Mutant RB69 DNA polymerase |
US8501406B1 (en) | 2009-07-14 | 2013-08-06 | Pacific Biosciences Of California, Inc. | Selectively functionalized arrays |
US8182994B2 (en) | 2009-09-15 | 2012-05-22 | Illumina Cambridge Limited | Centroid markers for image analysis of high denisty clusters in complex polynucleotide sequencing |
US9758825B2 (en) | 2009-09-15 | 2017-09-12 | Illumina Cambridge Limited | Centroid markers for image analysis of high density clusters in complex polynucleotide sequencing |
US8541172B2 (en) | 2009-09-15 | 2013-09-24 | Illumina Cambridge Limited | Method for sequencing a polynucelotide template |
US8795971B2 (en) | 2009-09-15 | 2014-08-05 | Illumina Cambridge Limited | Centroid markers for image analysis of high density clusters in complex polynucleotide sequencing |
WO2011050938A1 (en) | 2009-10-26 | 2011-05-05 | Genovoxx Gmbh | Conjugates of nucleotides and method for the application thereof |
DE102010049607A1 (en) | 2009-10-26 | 2011-06-30 | Becker, Claus, Prof., 76470 | Conjugates of nucleotides and methods for their use |
WO2011093939A1 (en) | 2010-02-01 | 2011-08-04 | Illumina, Inc. | Focusing methods and optical systems and assemblies using the same |
US8518643B2 (en) | 2010-02-04 | 2013-08-27 | Pacific Biosciences Of California, Inc. | Method to improve single molecule analyses |
US11027502B2 (en) | 2010-02-08 | 2021-06-08 | Roche Sequencing Solutions, Inc. | Systems and methods for forming a nanopore in a lipid bilayer |
US9605307B2 (en) | 2010-02-08 | 2017-03-28 | Genia Technologies, Inc. | Systems and methods for forming a nanopore in a lipid bilayer |
US9041420B2 (en) | 2010-02-08 | 2015-05-26 | Genia Technologies, Inc. | Systems and methods for characterizing a molecule |
US10371692B2 (en) | 2010-02-08 | 2019-08-06 | Genia Technologies, Inc. | Systems for forming a nanopore in a lipid bilayer |
US10926486B2 (en) | 2010-02-08 | 2021-02-23 | Roche Sequencing Solutions, Inc. | Systems and methods for forming a nanopore in a lipid bilayer |
US10343350B2 (en) | 2010-02-08 | 2019-07-09 | Genia Technologies, Inc. | Systems and methods for forming a nanopore in a lipid bilayer |
US9377437B2 (en) | 2010-02-08 | 2016-06-28 | Genia Technologies, Inc. | Systems and methods for characterizing a molecule |
US9678055B2 (en) | 2010-02-08 | 2017-06-13 | Genia Technologies, Inc. | Methods for forming a nanopore in a lipid bilayer |
US8465699B2 (en) | 2010-02-19 | 2013-06-18 | Pacific Biosciences Of California, Inc. | Illumination of integrated analytical systems |
US10724090B2 (en) | 2010-02-19 | 2020-07-28 | Pacific Biosciences Of California, Inc. | Integrated analytical system and method |
US9157864B2 (en) | 2010-02-19 | 2015-10-13 | Pacific Biosciences Of California, Inc. | Illumination of integrated analytical systems |
US8994946B2 (en) | 2010-02-19 | 2015-03-31 | Pacific Biosciences Of California, Inc. | Integrated analytical system and method |
US9822410B2 (en) | 2010-02-19 | 2017-11-21 | Pacific Biosciences Of California, Inc. | Integrated analytical system and method |
US9291569B2 (en) | 2010-02-19 | 2016-03-22 | Pacific Biosciences Of California, Inc. | Optics collection and detection system and method |
US9410891B2 (en) | 2010-02-19 | 2016-08-09 | Pacific Biosciences Of California, Inc. | Optics collection and detection system and method |
US9291568B2 (en) | 2010-02-19 | 2016-03-22 | Pacific Biosciences Of California, Inc. | Integrated analytical system and method |
US8467061B2 (en) | 2010-02-19 | 2013-06-18 | Pacific Biosciences Of California, Inc. | Integrated analytical system and method |
US10640825B2 (en) | 2010-02-19 | 2020-05-05 | Pacific Biosciences Of California, Inc. | Integrated analytical system and method |
US10138515B2 (en) | 2010-02-19 | 2018-11-27 | Pacific Biosciences Of California, Inc. | Illumination of integrated analytical systems |
US8867038B2 (en) | 2010-02-19 | 2014-10-21 | Pacific Biosciences Of California, Inc. | Integrated analytical system and method |
US8649011B2 (en) | 2010-02-19 | 2014-02-11 | Pacific Biosciences Of California, Inc. | Integrated analytical system and method |
US11001889B2 (en) | 2010-02-19 | 2021-05-11 | Pacific Biosciences Of California, Inc. | Illumination of integrated analytical systems |
US9488584B2 (en) | 2010-02-19 | 2016-11-08 | Pacific Bioscience Of California, Inc. | Integrated analytical system and method |
US8748789B2 (en) | 2010-03-06 | 2014-06-10 | Illumina, Inc. | Assay instrument for detecting optical signals from samples |
DE202011003570U1 (en) | 2010-03-06 | 2012-01-30 | Illumina, Inc. | Systems and apparatus for detecting optical signals from a sample |
US9139875B2 (en) | 2010-03-06 | 2015-09-22 | Illumina, Inc. | Assay instrument for detecting optical signals from samples having a controlled optics adjustment system based on the priority statuses of the samples |
US8481903B2 (en) | 2010-03-06 | 2013-07-09 | Alexander Triener | Systems, methods, and apparatuses including a moveable optical component for detecting optical signals from a sample |
WO2011112465A1 (en) | 2010-03-06 | 2011-09-15 | Illumina, Inc. | Systems, methods, and apparatuses for detecting optical signals from a sample |
US10982268B2 (en) | 2010-04-05 | 2021-04-20 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11549138B2 (en) | 2010-04-05 | 2023-01-10 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11365442B2 (en) | 2010-04-05 | 2022-06-21 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11067567B2 (en) | 2010-04-05 | 2021-07-20 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11767550B2 (en) | 2010-04-05 | 2023-09-26 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11313856B2 (en) | 2010-04-05 | 2022-04-26 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11542543B2 (en) | 2010-04-05 | 2023-01-03 | Prognosys Biosciences, Inc. | System for analyzing targets of a tissue section |
US10962532B2 (en) | 2010-04-05 | 2021-03-30 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US10961566B2 (en) | 2010-04-05 | 2021-03-30 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11293917B2 (en) | 2010-04-05 | 2022-04-05 | Prognosys Biosciences, Inc. | Systems for analyzing target biological molecules via sample imaging and delivery of probes to substrate wells |
US11634756B2 (en) | 2010-04-05 | 2023-04-25 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11560587B2 (en) | 2010-04-05 | 2023-01-24 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US10662468B2 (en) | 2010-04-05 | 2020-05-26 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11384386B2 (en) | 2010-04-05 | 2022-07-12 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11732292B2 (en) | 2010-04-05 | 2023-08-22 | Prognosys Biosciences, Inc. | Spatially encoded biological assays correlating target nucleic acid to tissue section location |
US10662467B2 (en) | 2010-04-05 | 2020-05-26 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US10619196B1 (en) | 2010-04-05 | 2020-04-14 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US10612079B2 (en) | 2010-04-05 | 2020-04-07 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11371086B2 (en) | 2010-04-05 | 2022-06-28 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US10472669B2 (en) | 2010-04-05 | 2019-11-12 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11008607B2 (en) | 2010-04-05 | 2021-05-18 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11733238B2 (en) | 2010-04-05 | 2023-08-22 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US10480022B2 (en) | 2010-04-05 | 2019-11-19 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11001878B1 (en) | 2010-04-05 | 2021-05-11 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11761030B2 (en) | 2010-04-05 | 2023-09-19 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US10494667B2 (en) | 2010-04-05 | 2019-12-03 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US10914730B2 (en) | 2010-04-05 | 2021-02-09 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11401545B2 (en) | 2010-04-05 | 2022-08-02 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11519022B2 (en) | 2010-04-05 | 2022-12-06 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11156603B2 (en) | 2010-04-05 | 2021-10-26 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11479810B1 (en) | 2010-04-05 | 2022-10-25 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US10983113B2 (en) | 2010-04-05 | 2021-04-20 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11001879B1 (en) | 2010-04-05 | 2021-05-11 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11866770B2 (en) | 2010-04-05 | 2024-01-09 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US10787701B2 (en) | 2010-04-05 | 2020-09-29 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11208684B2 (en) | 2010-04-05 | 2021-12-28 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US10996219B2 (en) | 2010-04-05 | 2021-05-04 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11643684B2 (en) | 2010-06-18 | 2023-05-09 | Illumina, Inc. | Conformational probes and methods for sequencing nucleic acids |
US10837056B2 (en) | 2010-06-18 | 2020-11-17 | Illumina, Inc. | Conformational probes and methods for sequencing nucleic acids |
US9353412B2 (en) | 2010-06-18 | 2016-05-31 | Illumina, Inc. | Conformational probes and methods for sequencing nucleic acids |
US10233493B2 (en) | 2010-06-18 | 2019-03-19 | Illumina, Inc. | Conformational probes and methods for sequencing nucleic acids |
US8318094B1 (en) | 2010-06-18 | 2012-11-27 | Pacific Biosciences Of California, Inc. | Substrate analysis systems |
WO2011159942A1 (en) | 2010-06-18 | 2011-12-22 | Illumina, Inc. | Conformational probes and methods for sequencing nucleic acids |
US9862998B2 (en) | 2010-06-18 | 2018-01-09 | Illumina, Inc. | Conformational probes and methods for sequencing nucleic acids |
US9732382B2 (en) | 2010-08-12 | 2017-08-15 | Pacific Biosciences Of California, Inc. | Photodamage mitigation compounds and systems |
US8834847B2 (en) | 2010-08-12 | 2014-09-16 | Pacific Biosciences Of California, Inc. | Photodamage mitigation compounds and systems |
US8465922B2 (en) | 2010-08-26 | 2013-06-18 | Pacific Biosciences Of California, Inc. | Methods and systems for monitoring reactions |
US11279975B2 (en) | 2010-08-27 | 2022-03-22 | Illumina Cambridge Limited | Methods for sequencing polynucleotides |
WO2012025250A1 (en) | 2010-08-27 | 2012-03-01 | Illumina Cambridge Ltd. | Methods for paired - end sequencing of polynucleotides |
EP2801623A1 (en) | 2010-08-27 | 2014-11-12 | Illumina Cambridge Limited | Methods for paired-end sequencing of polynucleotides |
US9029103B2 (en) | 2010-08-27 | 2015-05-12 | Illumina Cambridge Limited | Methods for sequencing polynucleotides |
US10329613B2 (en) | 2010-08-27 | 2019-06-25 | Illumina Cambridge Limited | Methods for sequencing polynucleotides |
EP3205730A1 (en) | 2010-08-27 | 2017-08-16 | Illumina Cambridge Limited | Methods for paired-end sequencing of polynucleotides |
US9222134B2 (en) | 2010-09-17 | 2015-12-29 | Illumina, Inc. | Molecule detection system on a solid support |
US8483969B2 (en) | 2010-09-17 | 2013-07-09 | Illuminia, Inc. | Variation analysis for multiple templates on a solid support |
WO2012050920A1 (en) | 2010-09-29 | 2012-04-19 | Illumina, Inc. | Compositions and methods for sequencing nucleic acids |
WO2012055929A1 (en) | 2010-10-26 | 2012-05-03 | Illumina, Inc. | Sequencing methods |
WO2012061036A1 (en) | 2010-11-03 | 2012-05-10 | Illumina, Inc. | Reducing adapter dimer formation |
US9506055B2 (en) | 2010-11-03 | 2016-11-29 | Illumina, Inc. | Reducing adapter dimer formation |
US8575071B2 (en) | 2010-11-03 | 2013-11-05 | Illumina, Inc. | Reducing adapter dimer formation |
US10233443B2 (en) | 2010-11-03 | 2019-03-19 | Illumina, Inc. | Reducing adapter dimer formation |
WO2012061832A1 (en) | 2010-11-05 | 2012-05-10 | Illumina, Inc. | Linking sequence reads using paired code tags |
US9284604B2 (en) | 2010-11-22 | 2016-03-15 | The Regents Of The University Of California | Methods of identifying a cellular nascent RNA transcript |
US8845880B2 (en) | 2010-12-22 | 2014-09-30 | Genia Technologies, Inc. | Nanopore-based single DNA molecule characterization, identification and isolation using speed bumps |
US9617593B2 (en) | 2010-12-22 | 2017-04-11 | Genia Technologies, Inc. | Nanopore-based single DNA molecule characterization, identification and isolation using speed bumps |
US10920271B2 (en) | 2010-12-22 | 2021-02-16 | Roche Sequencing Solutions, Inc. | Nanopore-based single DNA molecule characterization, identification and isolation using speed bumps |
US9121059B2 (en) | 2010-12-22 | 2015-09-01 | Genia Technologies, Inc. | Nanopore-based single molecule characterization |
US10400278B2 (en) | 2010-12-22 | 2019-09-03 | Genia Technologies, Inc. | Nanopore-based single DNA molecule characterization, identification and isolation using speed bumps |
US11559805B2 (en) | 2011-01-10 | 2023-01-24 | Illumina, Inc. | Systems, methods, and apparatuses to image a sample for biological or chemical analysis |
US11117130B2 (en) | 2011-01-10 | 2021-09-14 | Illumina, Inc. | Systems, methods, and apparatuses to image a sample for biological or chemical analysis |
US10220386B2 (en) | 2011-01-10 | 2019-03-05 | Illumina, Inc. | Systems, methods, and apparatuses to image a sample for biological or chemical analysis |
EP3378564A1 (en) | 2011-01-10 | 2018-09-26 | Illumina Inc. | Fluidic device holder |
US11697116B2 (en) | 2011-01-10 | 2023-07-11 | Illumina, Inc. | Systems, methods, and apparatuses to image a sample for biological or chemical analysis |
US11938479B2 (en) | 2011-01-10 | 2024-03-26 | Illumina, Inc. | Systems, methods, and apparatuses to image a sample for biological or chemical analysis |
US8951781B2 (en) | 2011-01-10 | 2015-02-10 | Illumina, Inc. | Systems, methods, and apparatuses to image a sample for biological or chemical analysis |
EP3714978A1 (en) | 2011-01-10 | 2020-09-30 | Illumina, Inc. | Systems, methods, and apparatuses to image a sample for biological or chemical analysis |
WO2012096703A1 (en) | 2011-01-10 | 2012-07-19 | Illumina, Inc. | Systems, methods, and apparatuses to image a sample for biological or chemical analysis |
US8962242B2 (en) | 2011-01-24 | 2015-02-24 | Genia Technologies, Inc. | System for detecting electrical properties of a molecular complex |
US9581563B2 (en) | 2011-01-24 | 2017-02-28 | Genia Technologies, Inc. | System for communicating information from an array of sensors |
US10156541B2 (en) | 2011-01-24 | 2018-12-18 | Genia Technologies, Inc. | System for detecting electrical properties of a molecular complex |
US10010852B2 (en) | 2011-01-27 | 2018-07-03 | Genia Technologies, Inc. | Temperature regulation of measurement arrays |
US9110478B2 (en) | 2011-01-27 | 2015-08-18 | Genia Technologies, Inc. | Temperature regulation of measurement arrays |
WO2012106081A2 (en) | 2011-01-31 | 2012-08-09 | Illumina, Inc. | Methods for reducing nucleic acid damage |
US10457936B2 (en) | 2011-02-02 | 2019-10-29 | University Of Washington Through Its Center For Commercialization | Massively parallel contiguity mapping |
US11299730B2 (en) | 2011-02-02 | 2022-04-12 | University Of Washington Through Its Center For Commercialization | Massively parallel contiguity mapping |
US10246705B2 (en) | 2011-02-10 | 2019-04-02 | Ilumina, Inc. | Linking sequence reads using paired code tags |
US9381517B2 (en) | 2011-03-23 | 2016-07-05 | Pacific Biosciences Of California, Inc. | Apparatus for loading molecules onto substrates |
US10934585B2 (en) | 2011-03-23 | 2021-03-02 | Pacific Biosciences Of California, Inc. | Loading extended polymerase-nucleic acid complexes |
US9475054B2 (en) | 2011-03-23 | 2016-10-25 | Pacific Biosciences Of California, Inc. | Isolation of polymerase-nucleic acid complexes |
US8658364B2 (en) | 2011-03-23 | 2014-02-25 | Pacific Biosciences Of California, Inc. | Isolation of polymerase-nucleic acid complexes |
US8715930B2 (en) | 2011-03-23 | 2014-05-06 | Pacific Biosciences Of California, Inc. | Loading molecules onto substrates |
US10000805B2 (en) | 2011-03-23 | 2018-06-19 | Pacific Biosciences Of California, Inc. | Isolation of polymerase-nucleic acid complexes |
US11827934B2 (en) | 2011-03-23 | 2023-11-28 | Pacific Biosciences Of California, Inc. | Methods for isolating nucleic acids |
US9611510B2 (en) | 2011-04-06 | 2017-04-04 | The University Of Chicago | Composition and methods related to modification of 5-methylcytosine (5-mC) |
US11795498B2 (en) | 2011-04-13 | 2023-10-24 | 10X Genomics Sweden Ab | Methods of detecting analytes |
US11479809B2 (en) | 2011-04-13 | 2022-10-25 | Spatial Transcriptomics Ab | Methods of detecting analytes |
US11352659B2 (en) | 2011-04-13 | 2022-06-07 | Spatial Transcriptomics Ab | Methods of detecting analytes |
US11788122B2 (en) | 2011-04-13 | 2023-10-17 | 10X Genomics Sweden Ab | Methods of detecting analytes |
DE102012008375A1 (en) | 2011-04-27 | 2012-10-31 | Genovoxx Gmbh | Methods and components for the detection of nucleic acid chains |
DE102012008759A1 (en) | 2011-05-04 | 2012-11-08 | Genovoxx Gmbh | Nucleoside-triphosphate conjugates and methods for their use |
WO2012150035A1 (en) | 2011-05-04 | 2012-11-08 | Genovoxx Gmbh | Nucleoside-triphosphate conjugate and methods for the use thereof |
US9624539B2 (en) | 2011-05-23 | 2017-04-18 | The Trustees Of Columbia University In The City Of New York | DNA sequencing by synthesis using Raman and infrared spectroscopy detection |
US10787698B2 (en) | 2011-06-09 | 2020-09-29 | Illumina, Inc. | Patterned flow-cells useful for nucleic acid analysis |
WO2013049135A1 (en) | 2011-09-26 | 2013-04-04 | Gen-Probe Incorporated | Algorithms for sequence determinations |
EP3293272A1 (en) | 2011-09-29 | 2018-03-14 | Illumina, Inc. | Continuous extension and deblocking in reactions for nucleic acid synthesis and sequencing |
US10378051B2 (en) | 2011-09-29 | 2019-08-13 | Illumina Cambridge Limited | Continuous extension and deblocking in reactions for nucleic acids synthesis and sequencing |
WO2013045939A1 (en) | 2011-09-29 | 2013-04-04 | Illumina, Inc. | Continuous extension and deblocking in reactions for nucleic acid synthesis and sequencing |
US10273537B2 (en) | 2011-10-14 | 2019-04-30 | Pacific Biosciences Of California, Inc. | Real-time redox sequencing methods |
US10941443B2 (en) | 2011-10-14 | 2021-03-09 | Pacific Biosciences Of California, Inc. | Real-time redox sequencing chips |
US10280454B2 (en) | 2011-10-28 | 2019-05-07 | Illumina, Inc. | Microarray fabrication system and method |
US11834704B2 (en) | 2011-10-28 | 2023-12-05 | Illumina, Inc. | Microarray fabrication system and method |
US9670535B2 (en) | 2011-10-28 | 2017-06-06 | Illumina, Inc. | Microarray fabrication system and method |
US11060135B2 (en) | 2011-10-28 | 2021-07-13 | Illumina, Inc. | Microarray fabrication system and method |
US10167505B2 (en) | 2011-11-07 | 2019-01-01 | Illumina, Inc. | Integrated sequencing apparatuses and methods of use |
US9309571B2 (en) | 2011-11-07 | 2016-04-12 | Illumina, Inc. | Integrated sequencing apparatuses and methods of use |
WO2013070627A2 (en) | 2011-11-07 | 2013-05-16 | Illumina, Inc. | Integrated sequencing apparatuses and methods of use |
US8637242B2 (en) | 2011-11-07 | 2014-01-28 | Illumina, Inc. | Integrated sequencing apparatuses and methods of use |
WO2013085710A2 (en) | 2011-12-09 | 2013-06-13 | Illumina, Inc. | Expanded radix for polymeric tags |
US11242560B2 (en) | 2011-12-21 | 2022-02-08 | Illumina, Inc. | Apparatus and methods for kinetic analysis and determination of nucleic acid sequences |
US9279154B2 (en) | 2011-12-21 | 2016-03-08 | Illumina, Inc. | Apparatus and methods for kinetic analysis and determination of nucleic acid sequences |
WO2013117595A2 (en) | 2012-02-07 | 2013-08-15 | Illumina Cambridge Limited | Targeted enrichment and amplification of nucleic acids on a support |
US11014958B2 (en) | 2012-02-15 | 2021-05-25 | Pacific Biosciences Of California, Inc. | Fluorescent polymerase enzyme substrates having protein shields |
US9062091B2 (en) | 2012-02-15 | 2015-06-23 | Pacific Biosciences Of California, Inc. | Polymerase enzyme substrates with protein shield |
US11718639B2 (en) | 2012-02-15 | 2023-08-08 | Pacific Biosciences Of California, Inc. | Fluorescent polymerase enzyme substrates having protein shields |
US10023605B2 (en) | 2012-02-15 | 2018-07-17 | Pacific Biosciences Of California, Inc. | Labeled nucleotide analogs having protein shields |
US11275052B2 (en) | 2012-02-27 | 2022-03-15 | Roche Sequencing Solutions, Inc. | Sensor circuit for controlling, detecting, and measuring a molecular complex |
US8986629B2 (en) | 2012-02-27 | 2015-03-24 | Genia Technologies, Inc. | Sensor circuit for controlling, detecting, and measuring a molecular complex |
EP3037552A1 (en) | 2012-03-06 | 2016-06-29 | Illumina Cambridge Limited | Improved methods of nucleic acid sequencing |
WO2013131962A1 (en) | 2012-03-06 | 2013-09-12 | Illumina Cambridge Limited | Improved methods of nucleic acid sequencing |
US9238836B2 (en) | 2012-03-30 | 2016-01-19 | Pacific Biosciences Of California, Inc. | Methods and compositions for sequencing modified nucleic acids |
WO2013148970A1 (en) | 2012-03-30 | 2013-10-03 | Illumina, Inc. | Methods and systems for determining fetal chromosomal abnormalities |
US10590484B2 (en) | 2012-03-30 | 2020-03-17 | Pacific Biosciences Of California, Inc. | Methods and compositions for sequencing modified nucleic acids |
US11565267B2 (en) | 2012-04-03 | 2023-01-31 | Illumina, Inc. | Integrated optoelectronic read head and fluidic cartridge useful for nucleic acid sequencing |
US9193996B2 (en) | 2012-04-03 | 2015-11-24 | Illumina, Inc. | Integrated optoelectronic read head and fluidic cartridge useful for nucleic acid sequencing |
EP4219012A1 (en) | 2012-04-03 | 2023-08-02 | Illumina, Inc. | Method of imaging a substrate comprising fluorescent features and use of the method in nucleic acid sequencing |
US9650669B2 (en) | 2012-04-03 | 2017-05-16 | Illumina, Inc. | Integrated optoelectronic read head and fluidic cartridge useful for nucleic acid sequencing |
US10549281B2 (en) | 2012-04-03 | 2020-02-04 | Illumina, Inc. | Integrated optoelectronic read head and fluidic cartridge useful for nucleic acid sequencing |
WO2013151622A1 (en) | 2012-04-03 | 2013-10-10 | Illumina, Inc. | Integrated optoelectronic read head and fluidic cartridge useful for nucleic acid sequencing |
US10428367B2 (en) | 2012-04-11 | 2019-10-01 | Illumina, Inc. | Portable genetic detection and analysis system and method |
US11634746B2 (en) | 2012-04-11 | 2023-04-25 | Illumina, Inc. | Portable genetic detection and analysis system and method |
US9175348B2 (en) | 2012-04-24 | 2015-11-03 | Pacific Biosciences Of California, Inc. | Identification of 5-methyl-C in nucleic acid templates |
EP3792320A1 (en) | 2012-06-08 | 2021-03-17 | Illumina, Inc. | Polymer coatings |
US10954561B2 (en) | 2012-06-08 | 2021-03-23 | Illumina, Inc. | Polymer coatings |
US9012022B2 (en) | 2012-06-08 | 2015-04-21 | Illumina, Inc. | Polymer coatings |
US10266891B2 (en) | 2012-06-08 | 2019-04-23 | Illumina, Inc. | Polymer coatings |
WO2013184796A1 (en) | 2012-06-08 | 2013-12-12 | Illumina, Inc. | Polymer coatings |
US11702694B2 (en) | 2012-06-08 | 2023-07-18 | Illumina, Inc. | Polymer coatings |
US9752186B2 (en) | 2012-06-08 | 2017-09-05 | Illumina, Inc. | Polymer coatings |
US8895249B2 (en) | 2012-06-15 | 2014-11-25 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
EP3366781A1 (en) | 2012-06-15 | 2018-08-29 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
US9494554B2 (en) | 2012-06-15 | 2016-11-15 | Genia Technologies, Inc. | Chip set-up and high-accuracy nucleic acid sequencing |
US11254976B2 (en) | 2012-06-15 | 2022-02-22 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
US10385384B2 (en) | 2012-06-15 | 2019-08-20 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
US9758816B2 (en) | 2012-06-15 | 2017-09-12 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
US9169513B2 (en) | 2012-06-15 | 2015-10-27 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
WO2013188582A1 (en) | 2012-06-15 | 2013-12-19 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
US9372308B1 (en) | 2012-06-17 | 2016-06-21 | Pacific Biosciences Of California, Inc. | Arrays of integrated analytical devices and methods for production |
US10768362B2 (en) | 2012-06-17 | 2020-09-08 | Pacific Biosciences Of California, Inc. | Arrays of integrated analytical devices and methods for production |
US9658161B2 (en) | 2012-06-17 | 2017-05-23 | Pacific Biosciences Of California, Inc. | Arrays of integrated analytical devices and methods for production |
US9946017B2 (en) | 2012-06-17 | 2018-04-17 | Pacific Biosciences Of California, Inc. | Arrays of integrated analytical devices and methods for production |
US10310178B2 (en) | 2012-06-17 | 2019-06-04 | Pacific Biosciences Of California, Inc. | Arrays of integrated analytical devices and methods for production |
WO2014008448A1 (en) | 2012-07-03 | 2014-01-09 | Sloan Kettering Institute For Cancer Research | Quantitative assessment of human t-cell repertoire recovery after allogeneic hematopoietic stem cell transplantation |
EP3354750A1 (en) | 2012-07-18 | 2018-08-01 | Siemens Healthcare Diagnostics Inc. | Kit of normalizing biological samples |
US11841322B2 (en) | 2012-08-20 | 2023-12-12 | Illumina, Inc. | Method and system for fluorescence lifetime based sequencing |
US10895534B2 (en) | 2012-08-20 | 2021-01-19 | Illumina, Inc. | Method and system for fluorescence lifetime based sequencing |
EP3699577A2 (en) | 2012-08-20 | 2020-08-26 | Illumina, Inc. | System for fluorescence lifetime based sequencing |
EP3594362A1 (en) | 2012-10-23 | 2020-01-15 | Illumina, Inc. | Method and systems for determining haplotypes in a sample |
WO2014066217A1 (en) | 2012-10-23 | 2014-05-01 | Illumina, Inc. | Hla typing using selective amplification and sequencing |
US10206911B2 (en) | 2012-10-26 | 2019-02-19 | Memorial Sloan-Kettering Cancer Center | Androgen receptor variants and methods for making and using |
US9605309B2 (en) | 2012-11-09 | 2017-03-28 | Genia Technologies, Inc. | Nucleic acid sequencing using tags |
US10526647B2 (en) | 2012-11-09 | 2020-01-07 | The Trustees Of Columbia University In The City Of New York | Nucleic acid sequences using tags |
US10822650B2 (en) | 2012-11-09 | 2020-11-03 | Roche Sequencing Solutions, Inc. | Nucleic acid sequencing using tags |
US11674174B2 (en) | 2012-11-09 | 2023-06-13 | The Trustees Of Columbia University In The City Of New York | Nucleic acid sequences using tags |
US10018764B2 (en) | 2012-12-18 | 2018-07-10 | Pacific Biosciences Of California | Illumination of optical analytical devices |
US9223084B2 (en) | 2012-12-18 | 2015-12-29 | Pacific Biosciences Of California, Inc. | Illumination of optical analytical devices |
US11640022B2 (en) | 2012-12-18 | 2023-05-02 | Pacific Biosciences Of California, Inc. | Illumination of optical analytical devices |
US11137532B2 (en) | 2012-12-18 | 2021-10-05 | Pacific Biosciences Of California, Inc. | Illumination of optical analytical devices |
US10578788B2 (en) | 2012-12-18 | 2020-03-03 | Pacific Biosciences Of California, Inc. | Illumination of optical analytical devices |
US10988760B2 (en) | 2013-01-09 | 2021-04-27 | Illumina Cambridge Limited | Sample preparation on a solid support |
EP3486331A1 (en) | 2013-01-09 | 2019-05-22 | Illumina Cambridge Limited | Sample preparation on a solid support |
US10041066B2 (en) | 2013-01-09 | 2018-08-07 | Illumina Cambridge Limited | Sample preparation on a solid support |
WO2014108810A2 (en) | 2013-01-09 | 2014-07-17 | Lumina Cambridge Limited | Sample preparation on a solid support |
US9805407B2 (en) | 2013-01-25 | 2017-10-31 | Illumina, Inc. | Methods and systems for using a cloud computing environment to configure and sell a biological sample preparation cartridge and share related data |
US10217156B2 (en) | 2013-01-25 | 2019-02-26 | Illumina, Inc. | Methods and systems for using a cloud computing environment to share biological related data |
WO2014116851A2 (en) | 2013-01-25 | 2014-07-31 | Illumina, Inc. | Methods and systems for using a cloud computing environment to share biological related data |
US9759711B2 (en) | 2013-02-05 | 2017-09-12 | Genia Technologies, Inc. | Nanopore arrays |
US10012637B2 (en) | 2013-02-05 | 2018-07-03 | Genia Technologies, Inc. | Nanopore arrays |
US10809244B2 (en) | 2013-02-05 | 2020-10-20 | Roche Sequencing Solutions, Inc. | Nanopore arrays |
US10144963B2 (en) | 2013-02-22 | 2018-12-04 | Pacific Biosciences Of California, Inc. | Integrated illumination of optical analytical devices |
US10570450B2 (en) | 2013-02-22 | 2020-02-25 | Pacific Biosciences Of California, Inc. | Integrated illumination of optical analytical devices |
US9624540B2 (en) | 2013-02-22 | 2017-04-18 | Pacific Biosciences Of California, Inc. | Integrated illumination of optical analytical devices |
US11384393B2 (en) | 2013-02-22 | 2022-07-12 | Pacific Biosciences Of California, Inc. | Integrated illumination of optical analytical devices |
WO2014133905A1 (en) | 2013-02-26 | 2014-09-04 | Illumina, Inc. | Gel patterned surfaces |
EP3603794A1 (en) | 2013-02-26 | 2020-02-05 | Illumina, Inc. | Gel patterned surfaces |
US10668444B2 (en) | 2013-02-26 | 2020-06-02 | Illumina, Inc. | Gel patterned surfaces |
US9512422B2 (en) | 2013-02-26 | 2016-12-06 | Illumina, Inc. | Gel patterned surfaces |
US11173466B2 (en) | 2013-02-26 | 2021-11-16 | Illumina, Inc. | Gel patterned surfaces |
EP3834924A1 (en) | 2013-02-26 | 2021-06-16 | Illumina Inc | Gel patterned surfaces |
US9914979B2 (en) | 2013-03-04 | 2018-03-13 | Fry Laboratories, LLC | Method and kit for characterizing microorganisms |
EP3919617A1 (en) | 2013-03-13 | 2021-12-08 | Illumina, Inc. | Methods and compositions for nucleic acid sequencing |
WO2014142841A1 (en) | 2013-03-13 | 2014-09-18 | Illumina, Inc. | Multilayer fluidic devices and methods for their fabrication |
EP3553175A1 (en) | 2013-03-13 | 2019-10-16 | Illumina, Inc. | Methods and compositions for nucleic acid sequencing |
US11110452B2 (en) | 2013-03-13 | 2021-09-07 | Illumina, Inc. | Multilayer fluidic devices and methods for their fabrication |
WO2014142850A1 (en) | 2013-03-13 | 2014-09-18 | Illumina, Inc. | Methods and compositions for nucleic acid sequencing |
US10807089B2 (en) | 2013-03-13 | 2020-10-20 | Illumina, Inc. | Multilayer fluidic devices and methods for their fabrication |
US11319534B2 (en) | 2013-03-13 | 2022-05-03 | Illumina, Inc. | Methods and compositions for nucleic acid sequencing |
US10557133B2 (en) | 2013-03-13 | 2020-02-11 | Illumina, Inc. | Methods and compositions for nucleic acid sequencing |
WO2014142921A1 (en) | 2013-03-14 | 2014-09-18 | Illumina, Inc. | Modified polymerases for improved incorporation of nucleotide analogues |
US9193998B2 (en) | 2013-03-15 | 2015-11-24 | Illumina, Inc. | Super resolution imaging |
US10648026B2 (en) | 2013-03-15 | 2020-05-12 | The Trustees Of Columbia University In The City Of New York | Raman cluster tagged molecules for biological imaging |
US11697847B2 (en) | 2013-03-15 | 2023-07-11 | Illumina, Inc. | Super resolution imaging |
WO2014144569A1 (en) | 2013-03-15 | 2014-09-18 | Illumina, Inc. | Super resolution imaging |
US10982277B2 (en) | 2013-03-15 | 2021-04-20 | Illumina Cambridge Limited | Modified nucleosides or nucleotides |
US20170166961A1 (en) | 2013-03-15 | 2017-06-15 | Illumina Cambridge Limited | Modified nucleosides or nucleotides |
EP3388442A1 (en) | 2013-03-15 | 2018-10-17 | Illumina Cambridge Limited | Modified nucleosides or nucleotides |
WO2014142981A1 (en) | 2013-03-15 | 2014-09-18 | Illumina, Inc. | Enzyme-linked nucleotides |
US9593373B2 (en) | 2013-03-15 | 2017-03-14 | Illumina Cambridge Limited | Modified nucleosides or nucleotides |
US10407721B2 (en) | 2013-03-15 | 2019-09-10 | Illumina Cambridge Limited | Modified nucleosides or nucleotides |
US9670545B2 (en) | 2013-06-11 | 2017-06-06 | Coutagen Life Sciences, Inc. | Methods and kits for treating and classifying individuals at risk of or suffering from TRAP1 change-of-function |
US11359228B2 (en) | 2013-06-25 | 2022-06-14 | Prognosys Biosciences, Inc. | Methods and systems for determining spatial patterns of biological targets in a sample |
US11618918B2 (en) | 2013-06-25 | 2023-04-04 | Prognosys Biosciences, Inc. | Methods and systems for determining spatial patterns of biological targets in a sample |
US10927403B2 (en) | 2013-06-25 | 2021-02-23 | Prognosys Biosciences, Inc. | Methods and systems for determining spatial patterns of biological targets in a sample |
US11286515B2 (en) | 2013-06-25 | 2022-03-29 | Prognosys Biosciences, Inc. | Methods and systems for determining spatial patterns of biological targets in a sample |
US10774372B2 (en) | 2013-06-25 | 2020-09-15 | Prognosy s Biosciences, Inc. | Methods and systems for determining spatial patterns of biological targets in a sample |
US11821024B2 (en) | 2013-06-25 | 2023-11-21 | Prognosys Biosciences, Inc. | Methods and systems for determining spatial patterns of biological targets in a sample |
US11046996B1 (en) | 2013-06-25 | 2021-06-29 | Prognosys Biosciences, Inc. | Methods and systems for determining spatial patterns of biological targets in a sample |
US11753674B2 (en) | 2013-06-25 | 2023-09-12 | Prognosys Biosciences, Inc. | Methods and systems for determining spatial patterns of biological targets in a sample |
US9994687B2 (en) | 2013-07-01 | 2018-06-12 | Illumina, Inc. | Catalyst-free surface functionalization and polymer grafting |
EP3919624A2 (en) | 2013-07-01 | 2021-12-08 | Illumina, Inc. | Catalyst-free surface functionalization and polymer grafting |
US10975210B2 (en) | 2013-07-01 | 2021-04-13 | Illumina, Inc. | Catalyst-free surface functionalization and polymer grafting |
EP3431614A1 (en) | 2013-07-01 | 2019-01-23 | Illumina, Inc. | Catalyst-free surface functionalization and polymer grafting |
US11618808B2 (en) | 2013-07-01 | 2023-04-04 | Illumina, Inc. | Catalyst-free surface functionalization and polymer grafting |
WO2015002813A1 (en) | 2013-07-01 | 2015-01-08 | Illumina, Inc. | Catalyst-free surface functionalization and polymer grafting |
EP3241913A1 (en) | 2013-07-03 | 2017-11-08 | Illumina, Inc. | System for sequencing by orthogonal synthesis |
US9574235B2 (en) | 2013-07-03 | 2017-02-21 | Illumina, Inc. | Sequencing by orthogonal synthesis |
WO2015002789A1 (en) | 2013-07-03 | 2015-01-08 | Illumina, Inc. | Sequencing by orthogonal synthesis |
US9193999B2 (en) | 2013-07-03 | 2015-11-24 | Illumina, Inc. | Sequencing by orthogonal synthesis |
US10800805B2 (en) | 2013-08-05 | 2020-10-13 | Pacific Biosciences Of California, Inc. | Protected fluorescent reagent compounds |
US9957291B2 (en) | 2013-08-05 | 2018-05-01 | Pacific Biosciences Of California, Inc. | Protected fluorescent reagent compounds |
US11578093B2 (en) | 2013-08-05 | 2023-02-14 | Pacific Biosciences Of California, Inc. | Protected fluorescent reagent compounds |
US9410977B2 (en) | 2013-08-08 | 2016-08-09 | Illumina, Inc. | Fluidic system for reagent delivery to a flow cell |
USRE48993E1 (en) | 2013-08-08 | 2022-03-29 | Illumina, Inc. | Fluidic system for reagent delivery to a flow cell |
US9777325B2 (en) | 2013-08-08 | 2017-10-03 | Illumina, Inc. | Fluidic system for reagent delivery to a flow cell |
WO2015021228A1 (en) | 2013-08-08 | 2015-02-12 | Illumina, Inc. | Fluidic system for reagent delivery to a flow cell |
EP4190889A1 (en) | 2013-08-08 | 2023-06-07 | Illumina, Inc. | Fluidic system for reagent delivery to a flow cell |
DE202014006405U1 (en) | 2013-08-08 | 2014-12-08 | Illumina, Inc. | Fluid system for reagent delivery to a flow cell |
US10393700B2 (en) | 2013-10-17 | 2019-08-27 | Roche Sequencing Solutions, Inc. | Non-faradaic, capacitively coupled measurement in a nanopore cell array |
US9551697B2 (en) | 2013-10-17 | 2017-01-24 | Genia Technologies, Inc. | Non-faradaic, capacitively coupled measurement in a nanopore cell array |
US9322062B2 (en) | 2013-10-23 | 2016-04-26 | Genia Technologies, Inc. | Process for biosensor well formation |
US9567630B2 (en) | 2013-10-23 | 2017-02-14 | Genia Technologies, Inc. | Methods for forming lipid bilayers on biochips |
US10421995B2 (en) | 2013-10-23 | 2019-09-24 | Genia Technologies, Inc. | High speed molecular sensing with nanopores |
US9416414B2 (en) | 2013-10-24 | 2016-08-16 | Pacific Biosciences Of California, Inc. | Delaying real-time sequencing |
US11629376B2 (en) | 2013-10-24 | 2023-04-18 | Pacific Biosciences Of California, Inc. | Delaying real-time sequencing |
US10081836B2 (en) | 2013-10-24 | 2018-09-25 | Pacific Biosciences Of California, Inc. | Delaying real-time sequencing |
US10540783B2 (en) | 2013-11-01 | 2020-01-21 | Illumina, Inc. | Image analysis useful for patterned objects |
US11308640B2 (en) | 2013-11-01 | 2022-04-19 | Illumina, Inc. | Image analysis useful for patterned objects |
US11428635B2 (en) | 2013-11-17 | 2022-08-30 | Quantum-Si Incorporated | Integrated device with external light source for probing detecting and analyzing molecules |
US11287382B2 (en) | 2013-11-17 | 2022-03-29 | Quantum-Si Incorporated | Optical system and assay chip for probing, detecting and analyzing molecules |
US10048208B2 (en) | 2013-11-17 | 2018-08-14 | Quantum-Si Incorporated | Integrated device with external light source for probing detecting and analyzing molecules |
US10533945B2 (en) | 2013-11-17 | 2020-01-14 | Quantum-Si Incorporated | Optical system and assay chip for probing, detecting and analyzing molecules |
US10712274B2 (en) | 2013-11-17 | 2020-07-14 | Quantum-Si Incorporated | Active-source-pixel, integrated device for rapid analysis of biological and chemical specimens |
US10712273B2 (en) | 2013-11-17 | 2020-07-14 | Quantum-Si Incorporated | Active-source-pixel, integrated device for rapid analysis of biological and chemical specimens |
US9863880B2 (en) | 2013-11-17 | 2018-01-09 | Quantum-Si Incorporated | Optical system and assay chip for probing, detecting and analyzing molecules |
US9983135B2 (en) | 2013-11-17 | 2018-05-29 | Quantum-Si Incorporated | Active-source-pixel, integrated device for rapid analysis of biological and chemical specimens |
EP2876166A1 (en) | 2013-11-20 | 2015-05-27 | Roche Diagniostics GmbH | New compound for sequencing by synthesis |
EP3940082A1 (en) | 2013-12-03 | 2022-01-19 | Illumina, Inc. | Methods and systems for analyzing image data |
EP3715467A1 (en) | 2013-12-03 | 2020-09-30 | Illumina, Inc. | Methods and systems for analyzing image data |
WO2015084985A2 (en) | 2013-12-03 | 2015-06-11 | Illumina, Inc. | Methods and systems for analyzing image data |
US11719637B2 (en) | 2013-12-10 | 2023-08-08 | Illumina, Inc. | Biosensors for biological or chemical analysis and methods of manufacturing the same |
US11181478B2 (en) | 2013-12-10 | 2021-11-23 | Illumina, Inc. | Biosensors for biological or chemical analysis and methods of manufacturing the same |
EP4220137A1 (en) | 2013-12-10 | 2023-08-02 | Illumina, Inc. | Biosensors for biological or chemical analysis and methods of manufacturing the same |
WO2015095226A2 (en) | 2013-12-20 | 2015-06-25 | Illumina, Inc. | Preserving genomic connectivity information in fragmented genomic dna samples |
EP3957750A1 (en) | 2013-12-20 | 2022-02-23 | Illumina, Inc. | Preserving genomic connectivity information in fragmented genomic dna samples |
US10246746B2 (en) | 2013-12-20 | 2019-04-02 | Illumina, Inc. | Preserving genomic connectivity information in fragmented genomic DNA samples |
US11149310B2 (en) | 2013-12-20 | 2021-10-19 | Illumina, Inc. | Preserving genomic connectivity information in fragmented genomic DNA samples |
WO2015100373A2 (en) | 2013-12-23 | 2015-07-02 | Illumina, Inc. | Structured substrates for improving detection of light emissions and methods relating to the same |
EP3778890A1 (en) | 2013-12-23 | 2021-02-17 | Illumina, Inc. | Structured substrates for improving detection of light emissions and methods relating to the same |
US10537889B2 (en) | 2013-12-31 | 2020-01-21 | Illumina, Inc. | Addressable flow cell using patterned electrodes |
WO2015103225A1 (en) | 2013-12-31 | 2015-07-09 | Illumina, Inc. | Addressable flow cell using patterned electrodes |
WO2015106941A1 (en) | 2014-01-16 | 2015-07-23 | Illumina Cambridge Limited | Polynucleotide modification on solid support |
WO2015108663A1 (en) | 2014-01-16 | 2015-07-23 | Illumina, Inc. | Amplicon preparation and sequencing on solid supports |
US10865444B2 (en) | 2014-01-16 | 2020-12-15 | Illumina, Inc. | Amplicon preparation and sequencing on solid supports |
EP3910069A1 (en) | 2014-02-18 | 2021-11-17 | Illumina, Inc. | Methods and composition for dna profiling |
EP3698874A1 (en) | 2014-03-11 | 2020-08-26 | Illumina, Inc. | Disposable, integrated microfluidic cartridge and methods of making the same |
US11174513B2 (en) | 2014-03-11 | 2021-11-16 | Illumina, Inc. | Disposable, integrated microfluidic cartridge and methods of making and using same |
US10767219B2 (en) | 2014-03-11 | 2020-09-08 | Illumina, Inc. | Disposable, integrated microfluidic cartridge and methods of making and using same |
US10913964B2 (en) | 2014-04-17 | 2021-02-09 | Dna Script | Method for synthesizing nucleic acids, in particular long nucleic acids, use of said method and kit for implementing said method |
US11685941B2 (en) | 2014-04-17 | 2023-06-27 | Dna Script | Method for synthesizing nucleic acids, in particular long nucleic acids, use of said method and kit for implementing said method |
US10837040B2 (en) | 2014-04-17 | 2020-11-17 | Dna Script | Method for synthesizing nucleic acids, in particular long nucleic acids, use of said method and kit for implementing said method |
EP3680333A1 (en) | 2014-04-29 | 2020-07-15 | Illumina, Inc. | Multiplexed single cell expression analysis using template switch and tagmentation |
US10570447B2 (en) | 2014-05-16 | 2020-02-25 | Illumina, Inc. | Nucleic acid synthesis techniques |
WO2015175832A1 (en) | 2014-05-16 | 2015-11-19 | Illumina, Inc. | Nucleic acid synthesis techniques |
WO2015183871A1 (en) | 2014-05-27 | 2015-12-03 | Illumina, Inc. | Systems and methods for biochemical analysis including a base instrument and a removable cartridge |
US11590494B2 (en) | 2014-05-27 | 2023-02-28 | Illumina, Inc. | Systems and methods for biochemical analysis including a base instrument and a removable cartridge |
US11254981B2 (en) | 2014-06-03 | 2022-02-22 | Illumina, Inc. | Compositions, systems, and methods for detecting events using tethers anchored to or adjacent to nanopores |
EP3683318A1 (en) | 2014-06-03 | 2020-07-22 | Illumina, Inc. | Compositions, systems, and methods for detecting events using tethers anchored to or adjacent to nanopores |
US10364463B2 (en) | 2014-06-03 | 2019-07-30 | Illumina, Inc. | Compositions, systems, and methods for detecting events using tethers anchored to or adjacent to nanopores |
US9708655B2 (en) | 2014-06-03 | 2017-07-18 | Illumina, Inc. | Compositions, systems, and methods for detecting events using tethers anchored to or adjacent to nanopores |
EP4039815A1 (en) | 2014-06-09 | 2022-08-10 | Illumina Cambridge Limited | Sample preparation for nucleic acid amplification |
EP3699289A1 (en) | 2014-06-09 | 2020-08-26 | Illumina Cambridge Limited | Sample preparation for nucleic acid amplification |
US11299765B2 (en) | 2014-06-13 | 2022-04-12 | Illumina Cambridge Limited | Methods and compositions for preparing sequencing libraries |
US10443087B2 (en) | 2014-06-13 | 2019-10-15 | Illumina Cambridge Limited | Methods and compositions for preparing sequencing libraries |
US11085041B2 (en) | 2014-06-26 | 2021-08-10 | Illumina, Inc. | Library preparation of tagged nucleic acid |
EP3754020A1 (en) | 2014-06-26 | 2020-12-23 | Illumina, Inc. | Library preparation of tagged nucleic acid using single tube add-on protocol |
WO2015200609A1 (en) | 2014-06-26 | 2015-12-30 | Illumina, Inc. | Library preparation of tagged nucleic acid using single tube add-on protocol |
WO2015200693A1 (en) | 2014-06-27 | 2015-12-30 | Illumina, Inc. | Modified polymerases for improved incorporation of nucleotide analogues |
EP3702471A1 (en) | 2014-06-27 | 2020-09-02 | Illumina, Inc. | Modified polymerases for improved incorporation of nucleotide analogues |
WO2016003814A1 (en) | 2014-06-30 | 2016-01-07 | Illumina, Inc. | Methods and compositions using one-sided transposition |
US10577603B2 (en) | 2014-06-30 | 2020-03-03 | Illumina, Inc. | Methods and compositions using one-sided transposition |
US10968448B2 (en) | 2014-06-30 | 2021-04-06 | Illumina, Inc. | Methods and compositions using one-sided transposition |
US10605766B2 (en) | 2014-07-15 | 2020-03-31 | Illumina, Inc. | Biochemically activated electronic device |
EP3460075A1 (en) | 2014-07-15 | 2019-03-27 | Illumina, Inc. | Biochemically activated electronic device |
US10545115B2 (en) | 2014-07-15 | 2020-01-28 | Illumina, Inc. | Biochemically activated electronic device |
EP3828279A1 (en) | 2014-07-15 | 2021-06-02 | Illumina, Inc. | Biochemically activated electronic device |
WO2016014409A1 (en) | 2014-07-21 | 2016-01-28 | Illumina, Inc. | Polynucleotide enrichment using crispr-cas systems |
US9696258B2 (en) | 2014-08-08 | 2017-07-04 | Quantum-Si Incorporated | Integrated device for temporal binning of received photons |
US11181477B2 (en) | 2014-08-08 | 2021-11-23 | Quantum-Si Incorporated | Integrated device with external light source for probing detecting and analyzing molecules |
EP3564252A1 (en) | 2014-08-08 | 2019-11-06 | Illumina Cambridge Limited | Modified nucleotide linkers |
US9921157B2 (en) | 2014-08-08 | 2018-03-20 | Quantum-Si Incorporated | Optical system and assay chip for probing, detecting and analyzing molecules |
US10288566B2 (en) | 2014-08-08 | 2019-05-14 | Quantum-Si Incorporated | Integrated device with external light source for probing detecting and analyzing molecules |
US9885657B2 (en) | 2014-08-08 | 2018-02-06 | Quantum-Si Incorporated | Integrated device with external light source for probing detecting and analyzing molecules |
US11175227B2 (en) | 2014-08-08 | 2021-11-16 | Quantum-Si Incorporated | Optical system and assay chip for probing, detecting and analyzing molecules |
US9678012B2 (en) | 2014-08-08 | 2017-06-13 | Quantum-Si Incorporated | Integrated device with external light source for probing detecting and analyzing molecules |
US10288565B2 (en) | 2014-08-08 | 2019-05-14 | Quantum-Si Incorporated | Integrated device with external light source for probing detecting and analyzing molecules |
US11879841B2 (en) | 2014-08-08 | 2024-01-23 | Quantum-Si Incorporated | Optical system and assay chip for probing, detecting and analyzing molecules |
US10371634B2 (en) | 2014-08-08 | 2019-08-06 | Quantum-Si Incorporated | Optical system and assay chip for probing, detecting and analyzing molecules |
US10502684B2 (en) | 2014-08-08 | 2019-12-10 | Quantum-Si Incorporated | Integrated device with external light source for probing detecting and analyzing molecules |
US11209363B2 (en) | 2014-08-08 | 2021-12-28 | Quantum-Si Incorporated | Integrated device for temporal binning of received photons |
US9784679B2 (en) | 2014-08-08 | 2017-10-10 | Quantum-Si Incorporated | Integrated device with external light source for probing detecting and analyzing molecules |
US9759658B2 (en) | 2014-08-08 | 2017-09-12 | Quantum-Si Incorporated | Integrated device for temporal binning of received photons |
US11719636B2 (en) | 2014-08-08 | 2023-08-08 | Quantum-Si Incorporated | Integrated device for temporal binning of received photons |
US10775305B2 (en) | 2014-08-08 | 2020-09-15 | Quantum-Si Incorporated | Integrated device for temporal binning of received photons |
US9945779B2 (en) | 2014-08-08 | 2018-04-17 | Quantum-Si Incorporated | Integrated device for temporal binning of received photons |
US9606058B2 (en) | 2014-08-08 | 2017-03-28 | Quantum-Si Incorporated | Integrated device for temporal binning of received photons |
WO2016026924A1 (en) | 2014-08-21 | 2016-02-25 | Illumina Cambridge Limited | Reversible surface functionalization |
US9982250B2 (en) | 2014-08-21 | 2018-05-29 | Illumina Cambridge Limited | Reversible surface functionalization |
US10684281B2 (en) | 2014-08-21 | 2020-06-16 | Illumina Cambridge Limited | Reversible surface functionalization |
US11199540B2 (en) | 2014-08-21 | 2021-12-14 | Illumina Cambridge Limited | Reversible surface functionalization |
US9606068B2 (en) | 2014-08-27 | 2017-03-28 | Pacific Biosciences Of California, Inc. | Arrays of integrated analytical devices |
US10234393B2 (en) | 2014-08-27 | 2019-03-19 | Pacific Biosciences Of California, Inc. | Arrays of integrated analytical devices |
US11467089B2 (en) | 2014-08-27 | 2022-10-11 | Pacific Biosciences Of California, Inc. | Arrays of integrated analytical devices |
US9915612B2 (en) | 2014-08-27 | 2018-03-13 | Pacific Biosciences Of California, Inc. | Arrays of integrated analytical devices |
US10859497B2 (en) | 2014-08-27 | 2020-12-08 | Pacific Biosciences Of California, Inc. | Arrays of integrated analytical devices |
US11059849B2 (en) | 2014-09-02 | 2021-07-13 | Dna Script | Modified nucleotides for synthesis of nucleic acids, a kit containing such nucleotides and their use for the production of synthetic nucleic acid sequences or genes |
WO2016040602A1 (en) | 2014-09-11 | 2016-03-17 | Epicentre Technologies Corporation | Reduced representation bisulfite sequencing using uracil n-glycosylase (ung) and endonuclease iv |
US10633694B2 (en) | 2014-09-12 | 2020-04-28 | Illumina, Inc. | Compositions, systems, and methods for detecting the presence of polymer subunits using chemiluminescence |
US11629373B2 (en) | 2014-09-12 | 2023-04-18 | Illumina, Inc. | Compositions, systems, and methods for detecting the presence of polymer subunits using chemiluminescence |
WO2016040607A1 (en) | 2014-09-12 | 2016-03-17 | Illumina, Inc. | Compositions, systems, and methods for detecting the presence of polymer subunits using chemiluminescence |
WO2016044233A1 (en) | 2014-09-18 | 2016-03-24 | Illumina, Inc. | Methods and systems for analyzing nucleic acid sequencing data |
WO2016054096A1 (en) | 2014-09-30 | 2016-04-07 | Illumina, Inc. | Modified polymerases for improved incorporation of nucleotide analogues |
WO2016061484A2 (en) | 2014-10-16 | 2016-04-21 | Illumina, Inc. | Optical scanning systems for in situ genetic analysis |
US11873480B2 (en) | 2014-10-17 | 2024-01-16 | Illumina Cambridge Limited | Contiguity preserving transposition |
EP3632944A1 (en) | 2014-10-31 | 2020-04-08 | Illumina Cambridge Limited | Polymers and dna copolymer coatings |
US9815916B2 (en) | 2014-10-31 | 2017-11-14 | Illumina Cambridge Limited | Polymers and DNA copolymer coatings |
EP3970849A1 (en) | 2014-10-31 | 2022-03-23 | Illumina Cambridge Limited | Polymers and dna copolymer coatings |
US10577439B2 (en) | 2014-10-31 | 2020-03-03 | Illumina Cambridge Limited | Polymers and DNA copolymer coatings |
US11447582B2 (en) | 2014-10-31 | 2022-09-20 | Illumina Cambridge Limited | Polymers and DNA copolymer coatings |
US10208142B2 (en) | 2014-10-31 | 2019-02-19 | Illumnia Cambridge Limited | Polymers and DNA copolymer coatings |
WO2016073237A1 (en) | 2014-11-05 | 2016-05-12 | Illumina Cambridge Limited | Reducing dna damage during sample preparation and sequencing using siderophore chelators |
US11555218B2 (en) | 2014-11-05 | 2023-01-17 | Illumina Cambridge Limited | Sequencing from multiple primers to increase data rate and density |
EP3974538A1 (en) | 2014-11-05 | 2022-03-30 | Illumina Cambridge Limited | Sequencing from multiple primers to increase data rate and density |
US10619204B2 (en) | 2014-11-11 | 2020-04-14 | Illumina Cambridge Limited | Methods and arrays for producing and sequencing monoclonal clusters of nucleic acid |
US11692223B2 (en) | 2014-11-11 | 2023-07-04 | Illumina Cambridge Limited | Methods and arrays for producing and sequencing monoclonal clusters of nucleic acid |
US10577649B2 (en) | 2014-11-11 | 2020-03-03 | Illumina, Inc. | Polynucleotide amplification using CRISPR-Cas systems |
US10960377B2 (en) | 2014-12-15 | 2021-03-30 | Illumina, Inc. | Compositions and methods for single molecular placement on a substrate |
US10350570B2 (en) | 2014-12-15 | 2019-07-16 | Illumina, Inc. | Compositions and methods for single molecular placement on a substrate |
EP3882356A1 (en) | 2014-12-15 | 2021-09-22 | Illumina, Inc. | Compositions and methods for single molecular placement on a substrate |
US11269199B2 (en) | 2015-01-23 | 2022-03-08 | Pacific Biosciences Of California, Inc. | Producing bragg gratings in optical waveguides |
US10302972B2 (en) | 2015-01-23 | 2019-05-28 | Pacific Biosciences Of California, Inc. | Waveguide transmission |
US10150872B2 (en) | 2015-02-04 | 2018-12-11 | Pacific Biosciences Of California, Inc. | Multimeric protected fluorescent reagents |
US10787573B2 (en) | 2015-02-04 | 2020-09-29 | Pacific Biosciences Of California, Inc. | Multimeric protected fluorescent reagents |
EP3725893A1 (en) | 2015-02-10 | 2020-10-21 | Illumina, Inc. | Compositions for analyzing cellular components |
US10487356B2 (en) | 2015-03-16 | 2019-11-26 | Pacific Biosciences Of California, Inc. | Integrated devices and systems for free-space optical coupling |
US10576471B2 (en) | 2015-03-20 | 2020-03-03 | Illumina, Inc. | Fluidics cartridge for use in the vertical or substantially vertical position |
US9976174B2 (en) | 2015-03-24 | 2018-05-22 | Illumina Cambridge Limited | Methods, carrier assemblies, and systems for imaging samples for biological or chemical analysis |
US11479808B2 (en) | 2015-03-24 | 2022-10-25 | Illumina Cambridge Limited | Methods, carrier assemblies, and systems for imaging samples for biological or chemical analysis |
EP4089398A1 (en) | 2015-03-24 | 2022-11-16 | Illumina, Inc. | Carrier assemblies and systems for imaging samples for biological or chemical analysis |
US10584374B2 (en) | 2015-03-24 | 2020-03-10 | Illumina Cambridge Limited | Methods, carrier assemblies, and systems for imaging samples for biological or chemical analysis |
EP3783109A1 (en) | 2015-03-31 | 2021-02-24 | Illumina Cambridge Limited | Surface concatamerization of templates |
US11613773B2 (en) | 2015-04-10 | 2023-03-28 | Spatial Transcriptomics Ab | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
US11390912B2 (en) | 2015-04-10 | 2022-07-19 | Spatial Transcriptomics Ab | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
WO2016162309A1 (en) | 2015-04-10 | 2016-10-13 | Spatial Transcriptomics Ab | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
EP3901282A1 (en) | 2015-04-10 | 2021-10-27 | Spatial Transcriptomics AB | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
EP4151748A1 (en) | 2015-04-10 | 2023-03-22 | Spatial Transcriptomics AB | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
EP4321627A2 (en) | 2015-04-10 | 2024-02-14 | 10x Genomics Sweden AB | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
US11162132B2 (en) | 2015-04-10 | 2021-11-02 | Spatial Transcriptomics Ab | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
EP4119677A1 (en) | 2015-04-10 | 2023-01-18 | Spatial Transcriptomics AB | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
US11299774B2 (en) | 2015-04-10 | 2022-04-12 | Spatial Transcriptomics Ab | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
EP4282977A2 (en) | 2015-04-10 | 2023-11-29 | 10x Genomics Sweden AB | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
US11739372B2 (en) | 2015-04-10 | 2023-08-29 | Spatial Transcriptomics Ab | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
US10774374B2 (en) | 2015-04-10 | 2020-09-15 | Spatial Transcriptomics AB and Illumina, Inc. | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
EP3901281A1 (en) | 2015-04-10 | 2021-10-27 | Spatial Transcriptomics AB | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
EP3530752A1 (en) | 2015-04-10 | 2019-08-28 | Spatial Transcriptomics AB | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
US10900030B2 (en) | 2015-04-14 | 2021-01-26 | Illumina, Inc. | Structured substrates for improving detection of light emissions and methods relating to the same |
US11466268B2 (en) | 2015-04-14 | 2022-10-11 | Illumina, Inc. | Structured substrates for improving detection of light emissions and methods relating to the same |
WO2016168386A1 (en) | 2015-04-14 | 2016-10-20 | Illumina, Inc. | Structured substrates for improving detection of light emissions and methods relating to the same |
EP3696536A1 (en) | 2015-04-14 | 2020-08-19 | Illumina, Inc. | A method of manufacturing a substrate and a method of analyzing biomolecules capable of generating light emissions |
US10844428B2 (en) | 2015-04-28 | 2020-11-24 | Illumina, Inc. | Error suppression in sequenced DNA fragments using redundant reads with unique molecular indices (UMIS) |
US11866777B2 (en) | 2015-04-28 | 2024-01-09 | Illumina, Inc. | Error suppression in sequenced DNA fragments using redundant reads with unique molecular indices (UMIS) |
EP3760737A2 (en) | 2015-05-11 | 2021-01-06 | Illumina, Inc. | Platform for discovery and analysis of therapeutic agents |
EP3822365A1 (en) | 2015-05-11 | 2021-05-19 | Illumina, Inc. | Platform for discovery and analysis of therapeutic agents |
EP4190912A1 (en) | 2015-05-11 | 2023-06-07 | Illumina, Inc. | Platform for discovery and analysis of therapeutic agents |
WO2016183029A1 (en) | 2015-05-11 | 2016-11-17 | Illumina, Inc. | Platform for discovery and analysis of therapeutic agents |
WO2016183218A1 (en) | 2015-05-12 | 2016-11-17 | Illumina, Inc. | Field-effect apparatus and methods for sequencing nucelic acids |
US10787704B2 (en) | 2015-05-12 | 2020-09-29 | Illumina, Inc. | Field-effect apparatus and methods for sequencing nucleic acids |
US10174363B2 (en) | 2015-05-20 | 2019-01-08 | Quantum-Si Incorporated | Methods for nucleic acid sequencing |
US11001875B2 (en) | 2015-05-20 | 2021-05-11 | Quantum-Si Incorporated | Methods for nucleic acid sequencing |
US10590464B2 (en) | 2015-05-29 | 2020-03-17 | Illumina Cambridge Limited | Enhanced utilization of surface primers in clusters |
WO2016196358A1 (en) | 2015-05-29 | 2016-12-08 | Epicentre Technologies Corporation | Methods of analyzing nucleic acids |
WO2016196210A2 (en) | 2015-05-29 | 2016-12-08 | Illumina, Inc. | Sample carrier and assay system for conducting designated reactions |
EP4046717A2 (en) | 2015-05-29 | 2022-08-24 | Illumina, Inc. | Sample carrier and assay system for conducting designated reactions |
US10648022B2 (en) | 2015-06-03 | 2020-05-12 | Illumina, Inc. | Compositions, systems, and methods for sequencing polynucleotides using tethers anchored to polymerases adjacent to nanopores |
US11693182B2 (en) | 2015-06-12 | 2023-07-04 | Pacific Biosciences Of California, Inc. | Integrated target waveguide devices and systems for optical coupling |
US10365434B2 (en) | 2015-06-12 | 2019-07-30 | Pacific Biosciences Of California, Inc. | Integrated target waveguide devices and systems for optical coupling |
US11054576B2 (en) | 2015-06-12 | 2021-07-06 | Pacific Biosciences Of California, Inc. | Integrated target waveguide devices and systems for optical coupling |
US11926873B2 (en) | 2015-06-17 | 2024-03-12 | The Translational Genomics Research Institute | Methods for predicting onset of a migraine in a subject by detecting STXBP3 RNA levels |
EP3878974A1 (en) | 2015-07-06 | 2021-09-15 | Illumina Cambridge Limited | Sample preparation for nucleic acid amplification |
US10808282B2 (en) | 2015-07-07 | 2020-10-20 | Illumina, Inc. | Selective surface patterning via nanoimprinting |
WO2017015018A1 (en) | 2015-07-17 | 2017-01-26 | Illumina, Inc. | Polymer sheets for sequencing applications |
WO2017019456A2 (en) | 2015-07-27 | 2017-02-02 | Illumina, Inc. | Spatial mapping of nucleic acid sequence information |
WO2017019278A1 (en) | 2015-07-30 | 2017-02-02 | Illumina, Inc. | Orthogonal deblocking of nucleotides |
EP3854884A1 (en) | 2015-08-14 | 2021-07-28 | Illumina, Inc. | Systems and methods using magnetically-responsive sensors for determining a genetic characteristic |
US11512348B2 (en) | 2015-08-14 | 2022-11-29 | Illumina, Inc. | Systems and methods using magnetically-responsive sensors for determining a genetic characteristic |
US10976334B2 (en) | 2015-08-24 | 2021-04-13 | Illumina, Inc. | In-line pressure accumulator and flow-control system for biological or chemical assays |
EP4086357A1 (en) | 2015-08-28 | 2022-11-09 | Illumina, Inc. | Nucleic acid sequence analysis from single cells |
US10906044B2 (en) | 2015-09-02 | 2021-02-02 | Illumina Cambridge Limited | Methods of improving droplet operations in fluidic systems with a filler fluid including a surface regenerative silane |
US10450598B2 (en) | 2015-09-11 | 2019-10-22 | Illumina, Inc. | Systems and methods for obtaining a droplet having a designated concentration of a substance-of-interest |
US10253352B2 (en) | 2015-11-17 | 2019-04-09 | Omniome, Inc. | Methods for determining sequence profiles |
US10781483B2 (en) | 2015-11-20 | 2020-09-22 | Pacific Biosciences Of California, Inc. | Labeled nucleotide analogs, reaction mixtures, and methods and systems for sequencing |
US11359235B2 (en) | 2015-11-20 | 2022-06-14 | Pacific Biosciences Of California, Inc. | Modified nucleotide reagents |
US10676788B2 (en) | 2015-11-20 | 2020-06-09 | Pacific Biosciences Of California, Inc. | Modified nucleotide reagents |
US11466319B2 (en) | 2015-11-20 | 2022-10-11 | Pacific Biosciences Of California, Inc. | Labeled nucleotide analogs, reaction mixtures, and methods and systems for sequencing |
US11884826B2 (en) | 2015-11-20 | 2024-01-30 | Pacific Biosciences Of California, Inc. | Protected dye-labeled reagents |
US11203689B2 (en) | 2015-11-20 | 2021-12-21 | Pacific Biosciences Of California, Inc. | Protected dye-labeled reagents |
US10669299B2 (en) | 2015-11-20 | 2020-06-02 | Pacific Biosciences Of California, Inc. | Protected dye-labeled reagents |
EP3798321A1 (en) | 2015-12-17 | 2021-03-31 | Illumina, Inc. | Distinguishing methylation levels in complex biological samples |
US11319593B2 (en) | 2015-12-17 | 2022-05-03 | Illumina, Inc. | Distinguishing methylation levels in complex biological samples |
DE202017100081U1 (en) | 2016-01-11 | 2017-03-19 | Illumina, Inc. | Detection device with a microfluorometer, a fluidic system and a flow cell detent module |
US11344200B2 (en) | 2016-02-17 | 2022-05-31 | Tesseract Health, Inc. | Sensor and device for lifetime imaging and detection applications |
EP4053545A1 (en) | 2016-03-24 | 2022-09-07 | Illumina, Inc. | Photonic superlattice-based devices and compositions for use in luminescent imaging, and methods of using the same |
US10837057B2 (en) | 2016-03-24 | 2020-11-17 | Illumina, Inc. | Photonic superlattice-based devices and compositions for use in luminescent imaging, and methods of using the same |
WO2017165703A1 (en) | 2016-03-24 | 2017-09-28 | Illumina, Inc. | Photonic superlattice-based devices and compositions for use in luminescent imaging, and methods of using the same |
US10059992B2 (en) | 2016-03-24 | 2018-08-28 | Illumina, Inc. | Photonic superlattice-based devices and compositions for use in luminescent imaging, and methods of using the same |
US11254983B2 (en) | 2016-03-24 | 2022-02-22 | Illumina, Inc. | Photonic superlattice-based devices and compositions for use in luminescent imaging, and methods of using the same |
US10472675B2 (en) | 2016-03-24 | 2019-11-12 | Illumina, Inc. | Photonic superlattice-based devices and compositions for use in luminescent imaging, and methods of using the same |
EP3831484A1 (en) | 2016-03-28 | 2021-06-09 | Illumina, Inc. | Multi-plane microarrays |
WO2017177017A1 (en) | 2016-04-07 | 2017-10-12 | Omniome, Inc. | Methods of quantifying target nucleic acids and identifying sequence variants |
WO2017182578A1 (en) | 2016-04-20 | 2017-10-26 | Qiagen Gmbh | Method for generating a stranded rna library |
US11015192B2 (en) | 2016-04-20 | 2021-05-25 | Qiagen Gmbh | Method for generating a stranded RNA library |
US11579336B2 (en) | 2016-04-22 | 2023-02-14 | Illumina, Inc. | Photonic structure-based devices and compositions for use in luminescent imaging of multiple sites within a pixel, and methods of using the same |
WO2017184996A1 (en) | 2016-04-22 | 2017-10-26 | Omniome, Inc. | Nucleic acid sequencing method and system employing enhanced detection of nucleotide-specific ternary complex formation |
WO2017184997A1 (en) | 2016-04-22 | 2017-10-26 | Illumina, Inc. | Photonic stucture-based devices and compositions for use in luminescent imaging of multiple sites within a pixel, and methods of using the same |
EP4224219A2 (en) | 2016-04-22 | 2023-08-09 | Illumina Inc | Photonic stucture-based devices and compositions for use in luminescent imaging of multiple sites within a pixel, and methods of using the same |
US10294514B2 (en) | 2016-04-29 | 2019-05-21 | Omniome, Inc. | Sequencing method employing ternary complex destabilization to identify cognate nucleotides |
US11203778B2 (en) | 2016-04-29 | 2021-12-21 | Omniome, Inc. | Sequencing method employing ternary complex destabilization to identify cognate nucleotides |
US10633692B2 (en) | 2016-04-29 | 2020-04-28 | Omniome, Inc. | Sequencing method employing ternary complex destabilization to identify cognate nucleotides |
US10597643B2 (en) | 2016-04-29 | 2020-03-24 | Omniome, Inc. | Polymerases engineered to reduce nucleotide-independent DNA binding |
WO2017190012A1 (en) | 2016-04-29 | 2017-11-02 | Omniome, Inc. | Method of nucleic acid sequence determination |
US10584379B2 (en) | 2016-04-29 | 2020-03-10 | Omniome, Inc. | Method of nucleic acid sequence determination |
EP4269611A2 (en) | 2016-05-11 | 2023-11-01 | Illumina, Inc. | Polynucleotide enrichment and amplification using argonaute systems |
WO2017197027A1 (en) | 2016-05-11 | 2017-11-16 | Illumina, Inc. | Polynucleotide enrichment and amplification using argonaute systems |
US11542544B2 (en) | 2016-05-11 | 2023-01-03 | Illumina, Inc. | Polynucleotide enrichment and amplification using CRISPR-Cas or Argonaute systems |
EP3656873A2 (en) | 2016-05-11 | 2020-05-27 | Illumina, Inc. | Polynucleotide enrichment and amplification using argonaute systems |
WO2017201198A1 (en) | 2016-05-18 | 2017-11-23 | Illumina, Inc. | Self assembled patterning using patterned hydrophobic surfaces |
US11535883B2 (en) | 2016-07-22 | 2022-12-27 | Illumina, Inc. | Single cell whole genome libraries and combinatorial indexing methods of making thereof |
WO2018018008A1 (en) | 2016-07-22 | 2018-01-25 | Oregon Health & Science University | Single cell whole genome libraries and combinatorial indexing methods of making thereof |
EP3904514A1 (en) | 2016-07-22 | 2021-11-03 | Oregon Health & Science University | Single cell whole genome libraries and combinatorial indexing methods of making thereof |
US10443098B2 (en) | 2016-08-15 | 2019-10-15 | Omniome, Inc. | Method and system for sequencing nucleic acids |
US11168364B2 (en) | 2016-08-15 | 2021-11-09 | Omniome, Inc. | Method and system for sequencing nucleic acids |
US11203779B2 (en) | 2016-08-15 | 2021-12-21 | Omnionie, Inc. | Sequencing method for rapid identification and processing of cognate nucleotide pairs |
US10428378B2 (en) | 2016-08-15 | 2019-10-01 | Omniome, Inc. | Sequencing method for rapid identification and processing of cognate nucleotide pairs |
US10246744B2 (en) | 2016-08-15 | 2019-04-02 | Omniome, Inc. | Method and system for sequencing nucleic acids |
WO2018034780A1 (en) | 2016-08-15 | 2018-02-22 | Omniome, Inc. | Sequencing method for rapid identification and processing of cognate nucleotide pairs |
WO2018064116A1 (en) | 2016-09-28 | 2018-04-05 | Illumina, Inc. | Methods and systems for data compression |
EP3308860A1 (en) | 2016-10-14 | 2018-04-18 | Illumina, Inc. | Cartridge assembly |
US10343160B2 (en) | 2016-10-14 | 2019-07-09 | Illumina, Inc. | Cartridge assembly |
US11458469B2 (en) | 2016-10-14 | 2022-10-04 | Illumina, Inc. | Cartridge assembly |
WO2018075785A1 (en) | 2016-10-19 | 2018-04-26 | Illumina, Inc. | Methods for chemical ligation of nucleic acids |
WO2018093780A1 (en) | 2016-11-16 | 2018-05-24 | Illumina, Inc. | Validation methods and systems for sequence variant calls |
EP4148145A1 (en) | 2016-11-17 | 2023-03-15 | Spatial Transcriptomics AB | Method for spatial tagging and analysing nucleic acids in a biological specimen |
EP3916108A1 (en) | 2016-11-17 | 2021-12-01 | Spatial Transcriptomics AB | Method for spatial tagging and analysing nucleic acids in a biological specimen |
EP4119663A1 (en) | 2016-12-09 | 2023-01-18 | The Broad Institute, Inc. | Crispr effector system based diagnostics |
WO2018107129A1 (en) | 2016-12-09 | 2018-06-14 | The Broad Institute, Inc. | Crispr effector system based diagnostics |
WO2018119063A1 (en) | 2016-12-22 | 2018-06-28 | Illumina, Inc. | Arrays with quality control tracers |
WO2018119057A2 (en) | 2016-12-22 | 2018-06-28 | Illumina, Inc. | Array including sequencing primer and non-sequencing entity |
US11719635B2 (en) | 2016-12-22 | 2023-08-08 | Quantum-Si Incorporated | Integrated photodetector with direct binning pixel |
US11512339B2 (en) | 2016-12-22 | 2022-11-29 | Illumina, Inc. | Arrays including a resin film and a patterned polymer layer |
US10845308B2 (en) | 2016-12-22 | 2020-11-24 | Quantum-Si Incorporated | Integrated photodetector with direct binning pixel |
WO2018119053A1 (en) | 2016-12-22 | 2018-06-28 | Illumina, Inc. | Arrays including a resin film and a patterned polymer layer |
US11112361B2 (en) | 2016-12-22 | 2021-09-07 | Quantum-Si Incorporated | Integrated photodetector with direct binning pixel |
US11932900B2 (en) | 2016-12-22 | 2024-03-19 | Illumina, Inc. | Arrays including a resin film and a patterned polymer layer |
US11248254B2 (en) | 2016-12-30 | 2022-02-15 | Omniome, Inc. | Method and system employing distinguishable polymerases for detecting ternary complexes and identifying cognate nucleotides |
WO2018125759A1 (en) | 2016-12-30 | 2018-07-05 | Omniome, Inc. | Method and system employing distinguishable polymerases for detecting ternary complexes and identifying cognate nucleotides |
WO2018128777A1 (en) | 2017-01-05 | 2018-07-12 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
US11661627B2 (en) | 2017-01-05 | 2023-05-30 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
US10808277B2 (en) | 2017-01-05 | 2020-10-20 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
WO2018129314A1 (en) | 2017-01-06 | 2018-07-12 | Illumina, Inc. | Phasing correction |
WO2018128544A1 (en) | 2017-01-06 | 2018-07-12 | Agendia N.V. | Biomarkers for selecting patient groups, and uses thereof. |
US11150179B2 (en) | 2017-01-06 | 2021-10-19 | Illumina, Inc. | Phasing correction |
WO2018132389A1 (en) | 2017-01-10 | 2018-07-19 | Omniome, Inc. | Polymerases engineered to reduce nucleotide-independent dna binding |
WO2018136416A1 (en) | 2017-01-17 | 2018-07-26 | Illumina, Inc. | Oncogenic splice variant determination |
US11761035B2 (en) | 2017-01-18 | 2023-09-19 | Illumina, Inc. | Methods and systems for generation and error-correction of unique molecular index sets with heterogeneous molecular lengths |
US10844429B2 (en) | 2017-01-18 | 2020-11-24 | Illumina, Inc. | Methods and systems for generation and error-correction of unique molecular index sets with heterogeneous molecular lengths |
WO2018136487A1 (en) | 2017-01-20 | 2018-07-26 | Omniome, Inc. | Process for cognate nucleotide detection in a nucleic acid sequencing workflow |
WO2018136118A1 (en) | 2017-01-20 | 2018-07-26 | Omniome, Inc. | Genotyping by polymerase binding |
WO2018136117A1 (en) | 2017-01-20 | 2018-07-26 | Omniome, Inc. | Allele-specific capture of nucleic acids |
WO2018144563A1 (en) | 2017-02-01 | 2018-08-09 | Illumina, Inc. | System and method with fiducials of non-closed shapes |
WO2018144574A1 (en) | 2017-02-01 | 2018-08-09 | Illumina, Inc. | System and method with fiducials having offset layouts |
WO2018144567A1 (en) | 2017-02-01 | 2018-08-09 | Illumina, Inc. | System and method with fiducials in non-rectilinear layouts |
WO2018152162A1 (en) | 2017-02-15 | 2018-08-23 | Omniome, Inc. | Distinguishing sequences by detecting polymerase dissociation |
WO2018151601A1 (en) | 2017-02-17 | 2018-08-23 | Stichting Vumc | Swarm intelligence-enhanced diagnosis and therapy selection for cancer using tumor- educated platelets |
WO2018156519A1 (en) | 2017-02-21 | 2018-08-30 | Illumina Inc. | Tagmentation using immobilized transposomes with linkers |
US10920219B2 (en) | 2017-02-21 | 2021-02-16 | Illumina, Inc. | Tagmentation using immobilized transposomes with linkers |
US11708573B2 (en) | 2017-02-21 | 2023-07-25 | Illumina, Inc. | Tagmentation using immobilized transposomes with linkers |
US11104937B2 (en) | 2017-03-15 | 2021-08-31 | The Broad Institute, Inc. | CRISPR effector system based diagnostics |
US11174515B2 (en) | 2017-03-15 | 2021-11-16 | The Broad Institute, Inc. | CRISPR effector system based diagnostics |
WO2018170340A1 (en) | 2017-03-15 | 2018-09-20 | The Broad Institute, Inc. | Crispr effector system based diagnostics for virus detection |
US11021740B2 (en) | 2017-03-15 | 2021-06-01 | The Broad Institute, Inc. | Devices for CRISPR effector system based diagnostics |
WO2018175258A1 (en) | 2017-03-20 | 2018-09-27 | Illumina, Inc. | Methods and compositions for preparing nuclelic acid libraries |
US11518993B2 (en) | 2017-03-20 | 2022-12-06 | Illumina, Inc. | Methods and compositions for preparing nucleic acid libraries |
WO2018175798A1 (en) | 2017-03-24 | 2018-09-27 | Life Technologies Corporation | Polynucleotide adapters and methods of use thereof |
EP4053294A1 (en) | 2017-03-24 | 2022-09-07 | Life Technologies Corporation | Polynucleotide adapters and methods of use thereof |
US11504711B2 (en) | 2017-04-04 | 2022-11-22 | Pacific Biosciences Of California, Inc. | Fluidic apparatus and methods useful for chemical and biological reactions |
US10737267B2 (en) | 2017-04-04 | 2020-08-11 | Omniome, Inc. | Fluidic apparatus and methods useful for chemical and biological reactions |
EP3913053A1 (en) | 2017-04-23 | 2021-11-24 | Illumina Cambridge Limited | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
WO2018197945A1 (en) | 2017-04-23 | 2018-11-01 | Illumina Cambridge Limited | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
WO2018200380A1 (en) | 2017-04-23 | 2018-11-01 | Illumina, Inc. | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
EP3842545A1 (en) | 2017-04-23 | 2021-06-30 | Illumina, Inc. | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
EP3872187A1 (en) | 2017-04-23 | 2021-09-01 | Illumina Cambridge Limited | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
WO2018200386A1 (en) | 2017-04-23 | 2018-11-01 | Illumina, Inc. | Compositions and methods for improving sample identification in indexed nucleic acid libraries |
EP3674417A1 (en) | 2017-04-25 | 2020-07-01 | Omniome, Inc. | Methods and apparatus that increase sequencing-by-binding efficiency |
US10161003B2 (en) | 2017-04-25 | 2018-12-25 | Omniome, Inc. | Methods and apparatus that increase sequencing-by-binding efficiency |
US11447823B2 (en) | 2017-04-25 | 2022-09-20 | Pacific Biosciences Of California, Inc. | Methods and apparatus that increase sequencing-by-binding efficiency |
WO2018200709A1 (en) | 2017-04-25 | 2018-11-01 | Omniome, Inc. | Methods and apparatus that increase sequencing-by-binding efficiency |
US9951385B1 (en) | 2017-04-25 | 2018-04-24 | Omniome, Inc. | Methods and apparatus that increase sequencing-by-binding efficiency |
US10655176B2 (en) | 2017-04-25 | 2020-05-19 | Omniome, Inc. | Methods and apparatus that increase sequencing-by-binding efficiency |
WO2018204423A1 (en) | 2017-05-01 | 2018-11-08 | Illumina, Inc. | Optimal index sequences for multiplex massively parallel sequencing |
WO2018208699A1 (en) | 2017-05-08 | 2018-11-15 | Illumina, Inc. | Universal short adapters for indexing of polynucleotide samples |
EP3981884A1 (en) | 2017-06-07 | 2022-04-13 | Oregon Health & Science University | Single cell whole genome libraries for methylation sequencing |
EP4293122A2 (en) | 2017-06-07 | 2023-12-20 | Oregon Health & Science University | Single cell whole genome libraries for methylation sequencing |
WO2018226708A1 (en) | 2017-06-07 | 2018-12-13 | Oregon Health & Science University | Single cell whole genome libraries for methylation sequencing |
WO2018236631A1 (en) | 2017-06-20 | 2018-12-27 | Illumina, Inc. | Methods and compositions for addressing inefficiencies in amplification reactions |
WO2019018366A1 (en) | 2017-07-18 | 2019-01-24 | Omniome, Inc. | Method of chemically modifying plastic surfaces |
WO2019027767A1 (en) | 2017-07-31 | 2019-02-07 | Illumina Inc. | Sequencing system with multiplexed biological sample aggregation |
US20200318177A1 (en) * | 2017-08-01 | 2020-10-08 | Mgi Tech Co., Ltd. | Nucleic acid sequencing method |
CN111032883A (en) * | 2017-08-01 | 2020-04-17 | 深圳华大智造科技有限公司 | Nucleic acid sequencing method |
US11649498B2 (en) | 2017-08-01 | 2023-05-16 | Illumina, Inc. | Spatial indexing of genetic material and library preparation using hydrogel beads and flow cells |
EP4289967A2 (en) | 2017-08-01 | 2023-12-13 | Illumina, Inc. | Spatial indexing of genetic material and library preparation using hydrogel beads and flow cells |
WO2019023924A1 (en) | 2017-08-01 | 2019-02-07 | Helitec Limited | Methods of enriching and determining target nucleotide sequences |
WO2019023951A1 (en) | 2017-08-01 | 2019-02-07 | 深圳华大智造科技有限公司 | Nucleic acid sequencing method |
US11352668B2 (en) | 2017-08-01 | 2022-06-07 | Illumina, Inc. | Spatial indexing of genetic material and library preparation using hydrogel beads and flow cells |
US11692221B2 (en) * | 2017-08-01 | 2023-07-04 | Mgi Tech Co., Ltd. | Nucleic acid sequencing method |
US11326202B2 (en) | 2017-08-01 | 2022-05-10 | Helitec Limited | Methods of enriching and determining target nucleotide sequences |
WO2019028166A1 (en) | 2017-08-01 | 2019-02-07 | Illumina, Inc. | Hydrogel beads for nucleotide sequencing |
WO2019028047A1 (en) | 2017-08-01 | 2019-02-07 | Illumina, Inc | Spatial indexing of genetic material and library preparation using hydrogel beads and flow cells |
WO2019035897A1 (en) | 2017-08-15 | 2019-02-21 | Omniome, Inc. | Scanning apparatus and methods useful for detection of chemical and biological analytes |
US10858701B2 (en) | 2017-08-15 | 2020-12-08 | Omniome, Inc. | Scanning apparatus and method useful for detection of chemical and biological analytes |
US10501796B2 (en) | 2017-08-15 | 2019-12-10 | Omniome, Inc. | Scanning apparatus and methods useful for detection of chemical and biological analytes |
US10858703B2 (en) | 2017-08-15 | 2020-12-08 | Omniome, Inc. | Scanning apparatus and methods useful for detection of chemical and biological analytes |
WO2019055715A1 (en) | 2017-09-15 | 2019-03-21 | Illumina, Inc. | Universal short adapters with variable length non-random unique molecular identifiers |
US11898198B2 (en) | 2017-09-15 | 2024-02-13 | Illumina, Inc. | Universal short adapters with variable length non-random unique molecular identifiers |
US11447818B2 (en) | 2017-09-15 | 2022-09-20 | Illumina, Inc. | Universal short adapters with variable length non-random unique molecular identifiers |
WO2019079200A1 (en) | 2017-10-16 | 2019-04-25 | Illumina, Inc. | Deep learning-based aberrant splicing detection |
WO2019079182A1 (en) | 2017-10-16 | 2019-04-25 | Illumina, Inc. | Semi-supervised learning for training an ensemble of deep convolutional neural networks |
WO2019079202A1 (en) | 2017-10-16 | 2019-04-25 | Illumina, Inc. | Aberrant splicing detection using convolutional neural networks (cnns) |
EP4296899A2 (en) | 2017-10-16 | 2023-12-27 | Illumina, Inc. | Deep learning-based techniques for pre-training deep convolutional neural networks |
WO2019079180A1 (en) | 2017-10-16 | 2019-04-25 | Illumina, Inc. | Deep convolutional neural networks for variant classification |
WO2019079198A1 (en) | 2017-10-16 | 2019-04-25 | Illumina, Inc. | Deep learning-based splice site classification |
WO2019079166A1 (en) | 2017-10-16 | 2019-04-25 | Illumina, Inc. | Deep learning-based techniques for training deep convolutional neural networks |
WO2019079593A1 (en) | 2017-10-19 | 2019-04-25 | Omniome, Inc. | Simultaneous background reduction and complex stabilization in binding assay workflows |
WO2019136376A1 (en) | 2018-01-08 | 2019-07-11 | Illumina, Inc. | High-throughput sequencing with semiconductor-based detection |
EP3913358A1 (en) | 2018-01-08 | 2021-11-24 | Illumina Inc | High-throughput sequencing with semiconductor-based detection |
US11561196B2 (en) | 2018-01-08 | 2023-01-24 | Illumina, Inc. | Systems and devices for high-throughput sequencing with semiconductor-based detection |
WO2019136388A1 (en) | 2018-01-08 | 2019-07-11 | Illumina, Inc. | Systems and devices for high-throughput sequencing with semiconductor-based detection |
EP3901833A1 (en) | 2018-01-15 | 2021-10-27 | Illumina, Inc. | Deep learning-based variant classifier |
US11705219B2 (en) | 2018-01-15 | 2023-07-18 | Illumina, Inc. | Deep learning-based variant classifier |
WO2019140402A1 (en) | 2018-01-15 | 2019-07-18 | Illumina, Inc. | Deep learning-based variant classifier |
WO2019148206A1 (en) | 2018-01-29 | 2019-08-01 | The Broad Institute, Inc. | Crispr effector system based diagnostics |
US11884971B2 (en) | 2018-02-06 | 2024-01-30 | Pacific Biosciences Of California, Inc. | Compositions and techniques for nucleic acid primer extension |
WO2019160820A1 (en) | 2018-02-13 | 2019-08-22 | Illumina, Inc. | Dna sequencing using hydrogel beads |
US11180752B2 (en) | 2018-02-13 | 2021-11-23 | Illumina, Inc. | DNA sequencing using hydrogel beads |
EP4083225A1 (en) | 2018-02-13 | 2022-11-02 | Illumina, Inc. | Dna sequencing using hydrogel beads |
EP4253562A2 (en) | 2018-02-13 | 2023-10-04 | Illumina, Inc. | Dna sequencing using hydrogel beads |
WO2019161381A1 (en) | 2018-02-16 | 2019-08-22 | Illumina, Inc. | Charge-tagged nucleotides and methods of use thereof |
US11578094B2 (en) | 2018-02-16 | 2023-02-14 | Illumina, Inc. | Charge-tagged nucleotides and methods of use thereof |
US10851131B2 (en) | 2018-02-16 | 2020-12-01 | Illumina, Inc. | Charge-tagged nucleotides and methods of use thereof |
US11111533B2 (en) | 2018-03-09 | 2021-09-07 | Illumina Cambridge Limited | Generalized stochastic super-resolution sequencing |
WO2019195225A1 (en) | 2018-04-02 | 2019-10-10 | Illumina, Inc. | Compositions and methods for making controls for sequence-based genetic testing |
US11953464B2 (en) | 2018-04-12 | 2024-04-09 | Illumina, Inc. | Semiconductor-based biosensors for base calling |
WO2019200338A1 (en) | 2018-04-12 | 2019-10-17 | Illumina, Inc. | Variant classifier based on deep neural networks |
WO2019203986A1 (en) | 2018-04-19 | 2019-10-24 | Omniome, Inc. | Improving accuracy of base calls in nucleic acid sequencing methods |
WO2019204229A1 (en) | 2018-04-20 | 2019-10-24 | Illumina, Inc. | Methods of encapsulating single cells, the encapsulated cells and uses thereof |
US11359226B2 (en) | 2018-04-20 | 2022-06-14 | Illumina, Inc. | Contiguity particle formation and methods of use |
US11242557B2 (en) | 2018-04-26 | 2022-02-08 | Omniome, Inc. | Methods and compositions for stabilizing nucleic acid-nucleotide-polymerase complexes |
EP4234718A2 (en) | 2018-04-26 | 2023-08-30 | Pacific Biosciences Of California, Inc. | Methods and compositions for stabilizing nucleic acid-nucleotide-polymerase complexes |
US10400272B1 (en) | 2018-04-26 | 2019-09-03 | Omniome, Inc. | Methods and compositions for stabilizing nucleic acid-nucleotide-polymerase complexes |
WO2019209426A1 (en) | 2018-04-26 | 2019-10-31 | Omniome, Inc. | Methods and compositions for stabilizing nucleic acid-nucleotide-polymerase complexes |
EP4306532A2 (en) | 2018-05-15 | 2024-01-17 | Illumina, Inc. | Chemical cleavage and deprotection |
WO2019222264A1 (en) | 2018-05-15 | 2019-11-21 | Illumina, Inc. | Compositions and methods for chemical cleavage and deprotection of surface-bound oligonucleotides |
WO2019227015A1 (en) | 2018-05-25 | 2019-11-28 | Illumina, Inc. | Circulating rna signatures specific to preeclampsia |
WO2019231568A1 (en) | 2018-05-31 | 2019-12-05 | Omniome, Inc. | Increased signal to noise in nucleic acid sequencing |
US11339428B2 (en) | 2018-05-31 | 2022-05-24 | Pacific Biosciences Of California, Inc. | Increased signal to noise in nucleic acid sequencing |
US11180794B2 (en) | 2018-05-31 | 2021-11-23 | Omniome, Inc. | Methods and compositions for capping nucleic acids |
EP4269618A2 (en) | 2018-06-04 | 2023-11-01 | Illumina, Inc. | Methods of making high-throughput single-cell transcriptome libraries |
US11391626B2 (en) | 2018-06-22 | 2022-07-19 | Quantum-Si Incorporated | Integrated photodetector with charge storage bin of varied detection time |
WO2020014280A1 (en) | 2018-07-11 | 2020-01-16 | Illumina, Inc. | DEEP LEARNING-BASED FRAMEWORK FOR IDENTIFYING SEQUENCE PATTERNS THAT CAUSE SEQUENCE-SPECIFIC ERRORS (SSEs) |
WO2020023362A1 (en) | 2018-07-24 | 2020-01-30 | Omniome, Inc. | Serial formation of ternary complex species |
US11421262B2 (en) | 2018-07-24 | 2022-08-23 | Pacific Biosciences Of California, Inc. | Serial formation of ternary complex species |
WO2020022891A2 (en) | 2018-07-26 | 2020-01-30 | Stichting Vumc | Biomarkers for atrial fibrillation |
WO2020033601A1 (en) | 2018-08-07 | 2020-02-13 | The Broad Institute, Inc. | Novel cas12b enzymes and systems |
WO2020036991A1 (en) | 2018-08-15 | 2020-02-20 | Illumina, Inc. | Compositions and methods for improving library enrichment |
US11519033B2 (en) | 2018-08-28 | 2022-12-06 | 10X Genomics, Inc. | Method for transposase-mediated spatial tagging and analyzing genomic DNA in a biological sample |
US11242512B2 (en) | 2018-09-17 | 2022-02-08 | Omniome, Inc. | Engineered polymerases for improved sequencing |
US11913038B2 (en) | 2018-09-17 | 2024-02-27 | Pacific Biosciences Of California, Inc. | Engineered polymerases for improved sequencing |
WO2020060811A1 (en) | 2018-09-17 | 2020-03-26 | Omniome, Inc. | Engineered polymerases for improved sequencing |
US10731141B2 (en) | 2018-09-17 | 2020-08-04 | Omniome, Inc. | Engineered polymerases for improved sequencing |
WO2020072816A1 (en) | 2018-10-03 | 2020-04-09 | The Broad Institute, Inc. | Crispr effector system based diagnostics for hemorrhagic fever detection |
WO2020081122A1 (en) | 2018-10-15 | 2020-04-23 | Illumina, Inc. | Deep learning-based techniques for pre-training deep convolutional neural networks |
US11085036B2 (en) | 2018-10-26 | 2021-08-10 | Illumina, Inc. | Modulating polymer beads for DNA processing |
WO2020086843A1 (en) | 2018-10-26 | 2020-04-30 | Illumina, Inc. | Modulating polymer beads for dna processing |
US11104888B2 (en) | 2018-10-31 | 2021-08-31 | Illumina, Inc. | Polymerases, compositions, and methods of use |
WO2020092830A1 (en) | 2018-10-31 | 2020-05-07 | Illumina, Inc. | Polymerases, compositions, and methods of use |
US11560552B2 (en) | 2018-10-31 | 2023-01-24 | Illumina, Inc. | Polymerases, compositions, and methods of use |
WO2020093261A1 (en) | 2018-11-07 | 2020-05-14 | 深圳华大智造极创科技有限公司 | Method for sequencing polynucleotides |
WO2020099451A1 (en) | 2018-11-14 | 2020-05-22 | Dna Script | Terminal deoxynucleotidyl transferase variants and uses thereof |
US11859217B2 (en) | 2018-11-14 | 2024-01-02 | Dna Script | Terminal deoxynucleotidyl transferase variants and uses thereof |
WO2020101795A1 (en) | 2018-11-15 | 2020-05-22 | Omniome, Inc. | Electronic detection of nucleic acid structure |
NL2022043B1 (en) | 2018-11-21 | 2020-06-03 | Akershus Univ Hf | Tagmentation-Associated Multiplex PCR Enrichment Sequencing |
WO2020104851A1 (en) | 2018-11-21 | 2020-05-28 | Akershus Universitetssykehus Hf | Tagmentation-associated multiplex pcr enrichment sequencing |
EP4293126A2 (en) | 2018-11-30 | 2023-12-20 | Illumina, Inc. | Analysis of multiple analytes using a single assay |
WO2020112604A2 (en) | 2018-11-30 | 2020-06-04 | Illumina, Inc. | Analysis of multiple analytes using a single assay |
WO2020117653A1 (en) | 2018-12-04 | 2020-06-11 | Omniome, Inc. | Mixed-phase fluids for nucleic acid sequencing and other analytical assays |
US10710076B2 (en) | 2018-12-04 | 2020-07-14 | Omniome, Inc. | Mixed-phase fluids for nucleic acid sequencing and other analytical assays |
US11001816B2 (en) | 2018-12-05 | 2021-05-11 | Illumina, Inc. | Polymerases, compositions, and methods of use |
WO2020114918A1 (en) | 2018-12-05 | 2020-06-11 | Illumina Cambridge Limited | Methods and compositions for cluster generation by bridge amplification |
US11634697B2 (en) | 2018-12-05 | 2023-04-25 | Illumina, Inc. | Polymerases, compositions, and methods of use |
WO2020117968A2 (en) | 2018-12-05 | 2020-06-11 | Illumina, Inc. | Polymerases, compositions, and methods of use |
GB201820341D0 (en) | 2018-12-13 | 2019-01-30 | 10X Genomics Inc | Method for transposase-mediated spatial tagging and analysing genomic DNA in a biological specimen |
GB201820300D0 (en) | 2018-12-13 | 2019-01-30 | 10X Genomics Inc | Method for spatial tagging and analysing genomic DNA in a biological specimen |
WO2020120442A2 (en) | 2018-12-13 | 2020-06-18 | Dna Script | Direct oligonucleotide synthesis on cells and biomolecules |
US11268091B2 (en) | 2018-12-13 | 2022-03-08 | Dna Script Sas | Direct oligonucleotide synthesis on cells and biomolecules |
WO2020120179A1 (en) | 2018-12-14 | 2020-06-18 | Illumina Cambridge Limited | Decreasing phasing with unlabeled nucleotides during sequencing |
WO2020126595A1 (en) | 2018-12-17 | 2020-06-25 | Illumina Cambridge Limited | Primer oligonucleotide for sequencing |
WO2020126593A1 (en) | 2018-12-17 | 2020-06-25 | Illumina Cambridge Limited | Compositions for use in polyunucleotide sequencing |
WO2020126602A1 (en) | 2018-12-18 | 2020-06-25 | Illumina Cambridge Limited | Methods and compositions for paired end sequencing using a single surface primer |
WO2020131759A1 (en) | 2018-12-19 | 2020-06-25 | Roche Diagnostics Gmbh | 3' protected nucleotides |
WO2020132103A1 (en) | 2018-12-19 | 2020-06-25 | Illumina, Inc. | Methods for improving polynucleotide cluster clonality priority |
US11041199B2 (en) | 2018-12-20 | 2021-06-22 | Omniome, Inc. | Temperature control for analysis of nucleic acids and other analytes |
WO2020132350A2 (en) | 2018-12-20 | 2020-06-25 | Omniome, Inc. | Temperature control for analysis of nucleic acids and other analytes |
WO2020136170A2 (en) | 2018-12-26 | 2020-07-02 | Illumina Cambridge Limited | Nucleosides and nucleotides with 3'-hydroxy blocking groups |
US11827931B2 (en) | 2018-12-26 | 2023-11-28 | Illumina Cambridge Limited | Methods of preparing growing polynucleotides using nucleotides with 3′ AOM blocking group |
US11293061B2 (en) | 2018-12-26 | 2022-04-05 | Illumina Cambridge Limited | Sequencing methods using nucleotides with 3′ AOM blocking group |
WO2020141143A1 (en) | 2019-01-03 | 2020-07-09 | Dna Script | One pot synthesis of sets of oligonucleotides |
US11649485B2 (en) | 2019-01-06 | 2023-05-16 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
US11926867B2 (en) | 2019-01-06 | 2024-03-12 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
US11753675B2 (en) | 2019-01-06 | 2023-09-12 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
US11306348B2 (en) | 2019-01-11 | 2022-04-19 | Illumina Cambridge Limited | Complex surface-bound transposome complexes |
US11685946B2 (en) | 2019-01-11 | 2023-06-27 | Illumina Cambridge Limited | Complex surface-bound transposome complexes |
WO2020144373A1 (en) | 2019-01-11 | 2020-07-16 | Illumina Cambridge Limited | Complex surface-bound transposome complexes |
US11359221B2 (en) | 2019-02-12 | 2022-06-14 | Dna Script Sas | Efficient product cleavage in template-free enzymatic synthesis of polynucleotides |
WO2020165137A1 (en) | 2019-02-12 | 2020-08-20 | Dna Script | Efficient product cleavage in template-free enzymatic synthesis of polynucleotides. |
US11905541B2 (en) | 2019-02-12 | 2024-02-20 | Dna Script Sas | Efficient product cleavage in template-free enzymatic synthesis of polynucleotides |
US11499189B2 (en) | 2019-02-14 | 2022-11-15 | Pacific Biosciences Of California, Inc. | Mitigating adverse impacts of detection systems on nucleic acids and other biological analytes |
WO2020167574A1 (en) | 2019-02-14 | 2020-08-20 | Omniome, Inc. | Mitigating adverse impacts of detection systems on nucleic acids and other biological analytes |
US11377680B2 (en) | 2019-02-19 | 2022-07-05 | Ultima Genomics, Inc. | Linkers and methods for optical detection and sequencing |
US11946097B2 (en) | 2019-02-19 | 2024-04-02 | Ultima Genomics, Inc. | Linkers and methods for optical detection and sequencing |
US11680950B2 (en) | 2019-02-20 | 2023-06-20 | Pacific Biosciences Of California, Inc. | Scanning apparatus and methods for detecting chemical and biological analytes |
WO2020180778A1 (en) | 2019-03-01 | 2020-09-10 | Illumina, Inc. | High-throughput single-nuclei and single-cell libraries and methods of making and of using |
WO2020191387A1 (en) | 2019-03-21 | 2020-09-24 | Illumina, Inc. | Artificial intelligence-based base calling |
US11676685B2 (en) | 2019-03-21 | 2023-06-13 | Illumina, Inc. | Artificial intelligence-based quality scoring |
NL2023314B1 (en) | 2019-03-21 | 2020-09-28 | Illumina Inc | Artificial intelligence-based quality scoring |
US11783917B2 (en) | 2019-03-21 | 2023-10-10 | Illumina, Inc. | Artificial intelligence-based base calling |
WO2020191391A2 (en) | 2019-03-21 | 2020-09-24 | Illumina, Inc. | Artificial intelligence-based sequencing |
WO2020191389A1 (en) | 2019-03-21 | 2020-09-24 | Illumina, Inc. | Training data generation for artificial intelligence-based sequencing |
WO2020191390A2 (en) | 2019-03-21 | 2020-09-24 | Illumina, Inc. | Artificial intelligence-based quality scoring |
EP4276769A2 (en) | 2019-03-21 | 2023-11-15 | Illumina, Inc. | Training data generation for artificial intelligence-based sequencing |
NL2023316B1 (en) | 2019-03-21 | 2020-09-28 | Illumina Inc | Artificial intelligence-based sequencing |
WO2020205296A1 (en) | 2019-03-21 | 2020-10-08 | Illumina, Inc. | Artificial intelligence-based generation of sequencing metadata |
NL2023311B1 (en) | 2019-03-21 | 2020-09-28 | Illumina Inc | Artificial intelligence-based generation of sequencing metadata |
US11908548B2 (en) | 2019-03-21 | 2024-02-20 | Illumina, Inc. | Training data generation for artificial intelligence-based sequencing |
NL2023312B1 (en) | 2019-03-21 | 2020-09-28 | Illumina Inc | Artificial intelligence-based base calling |
NL2023310B1 (en) | 2019-03-21 | 2020-09-28 | Illumina Inc | Training data generation for artificial intelligence-based sequencing |
WO2020227953A1 (en) | 2019-05-15 | 2020-11-19 | 深圳华大智造极创科技有限公司 | Single-channel sequencing method based on self-luminescence |
US11817182B2 (en) | 2019-05-16 | 2023-11-14 | Illumina, Inc. | Base calling using three-dimentional (3D) convolution |
US11593649B2 (en) | 2019-05-16 | 2023-02-28 | Illumina, Inc. | Base calling using convolutions |
WO2020232410A1 (en) | 2019-05-16 | 2020-11-19 | Illumina, Inc. | Base calling using convolutions |
WO2020252186A1 (en) | 2019-06-11 | 2020-12-17 | Omniome, Inc. | Calibrated focus sensing |
WO2021008805A1 (en) | 2019-07-12 | 2021-01-21 | Illumina Cambridge Limited | Compositions and methods for preparing nucleic acid sequencing libraries using crispr/cas9 immobilized on a solid support |
WO2021009494A1 (en) | 2019-07-12 | 2021-01-21 | Illumina Cambridge Limited | Nucleic acid library preparation using electrophoresis |
US11377655B2 (en) | 2019-07-16 | 2022-07-05 | Pacific Biosciences Of California, Inc. | Synthetic nucleic acids having non-natural structures |
US10656368B1 (en) | 2019-07-24 | 2020-05-19 | Omniome, Inc. | Method and system for biological imaging using a wide field objective lens |
WO2021015838A1 (en) | 2019-07-24 | 2021-01-28 | Omniome, Inc. | Objective lens of a microscope for imaging an array of nucleic acids and system for dna sequencing |
US11644636B2 (en) | 2019-07-24 | 2023-05-09 | Pacific Biosciences Of California, Inc. | Method and system for biological imaging using a wide field objective lens |
WO2021018919A1 (en) | 2019-07-30 | 2021-02-04 | Dna Script | Template-free enzymatic synthesis of polynucleotides using poly(a) and poly(u) polymerases |
WO2021018921A1 (en) | 2019-08-01 | 2021-02-04 | Dna Script | Increasing long-sequence yields in template-free enzymatic synthesis of polynucleotides. |
WO2021031109A1 (en) | 2019-08-20 | 2021-02-25 | 深圳华大智造极创科技有限公司 | Method for sequencing polynucleotides on basis of optical signal dynamics of luminescent label and secondary luminescent signal |
WO2021048142A1 (en) | 2019-09-09 | 2021-03-18 | Dna Script | Template-free enzymatic polynucleotide synthesis using photocleavable linkages |
WO2021050681A1 (en) | 2019-09-10 | 2021-03-18 | Omniome, Inc. | Reversible modification of nucleotides |
EP4265628A2 (en) | 2019-09-10 | 2023-10-25 | Pacific Biosciences of California, Inc. | Reversible modification of nucleotides |
US11180520B2 (en) | 2019-09-10 | 2021-11-23 | Omniome, Inc. | Reversible modifications of nucleotides |
WO2021050962A1 (en) | 2019-09-11 | 2021-03-18 | The United States Of America, As Represented By The Secretary, Department Of Health And Human Services | Cancer detection and classification |
WO2021058438A1 (en) | 2019-09-23 | 2021-04-01 | Dna Script | Increasing long-sequence yields in template-free enzymatic synthesis of polynucleotides |
WO2021076152A1 (en) | 2019-10-18 | 2021-04-22 | Omniome, Inc. | Methods and compositions for capping nucleic acids |
US11702698B2 (en) | 2019-11-08 | 2023-07-18 | 10X Genomics, Inc. | Enhancing specificity of analyte binding |
US11808769B2 (en) | 2019-11-08 | 2023-11-07 | 10X Genomics, Inc. | Spatially-tagged analyte capture agents for analyte multiplexing |
US11873516B2 (en) | 2019-11-08 | 2024-01-16 | Pacific Biosciences Of California, Inc. | Engineered polymerases for improved sequencing by binding |
WO2021092431A1 (en) | 2019-11-08 | 2021-05-14 | Omniome, Inc. | Engineered polymerases for improved sequencing by binding |
US11592447B2 (en) | 2019-11-08 | 2023-02-28 | 10X Genomics, Inc. | Spatially-tagged analyte capture agents for analyte multiplexing |
WO2021094251A1 (en) | 2019-11-13 | 2021-05-20 | Dna Script | High efficiency template-free enzymatic synthesis of polynucleotides |
WO2021102236A1 (en) | 2019-11-22 | 2021-05-27 | Illumina, Inc. | Circulating rna signatures specific to preeclampsia |
DE202019106695U1 (en) | 2019-12-02 | 2020-03-19 | Omniome, Inc. | System for sequencing nucleic acids in fluid foam |
DE202019106694U1 (en) | 2019-12-02 | 2020-03-19 | Omniome, Inc. | System for sequencing nucleic acids in fluid foam |
WO2021113287A1 (en) | 2019-12-04 | 2021-06-10 | Illumina, Inc. | Preparation of dna sequencing libraries for detection of dna pathogens in plasma |
WO2021118349A1 (en) | 2019-12-10 | 2021-06-17 | Prinses Máxima Centrum Voor Kinderoncologie B.V. | Methods of typing germ cell tumors |
WO2021116270A1 (en) | 2019-12-12 | 2021-06-17 | Dna Script | Chimeric terminal deoxynucleotidyl transferases for template-free enzymatic synthesis of polynucleotides |
WO2021122539A1 (en) | 2019-12-16 | 2021-06-24 | Dna Script | Template-free enzymatic polynucleotide synthesis using dismutationless terminal deoxynucleotidyl transferase variants |
WO2021123074A1 (en) | 2019-12-18 | 2021-06-24 | F. Hoffmann-La Roche Ag | Methods of sequencing by synthesis using a consecutive labeling scheme |
WO2021127436A2 (en) | 2019-12-19 | 2021-06-24 | Illumina, Inc. | High-throughput single-cell libraries and methods of making and of using |
US11332790B2 (en) | 2019-12-23 | 2022-05-17 | 10X Genomics, Inc. | Methods for spatial analysis using RNA-templated ligation |
US11560593B2 (en) | 2019-12-23 | 2023-01-24 | 10X Genomics, Inc. | Methods for spatial analysis using RNA-templated ligation |
US11505828B2 (en) | 2019-12-23 | 2022-11-22 | 10X Genomics, Inc. | Methods for spatial analysis using RNA-templated ligation |
US11795507B2 (en) | 2019-12-23 | 2023-10-24 | 10X Genomics, Inc. | Methods for spatial analysis using RNA-templated ligation |
US11732299B2 (en) | 2020-01-21 | 2023-08-22 | 10X Genomics, Inc. | Spatial assays with perturbed cells |
US11702693B2 (en) | 2020-01-21 | 2023-07-18 | 10X Genomics, Inc. | Methods for printing cells and generating arrays of barcoded cells |
US11821035B1 (en) | 2020-01-29 | 2023-11-21 | 10X Genomics, Inc. | Compositions and methods of making gene expression libraries |
US11898205B2 (en) | 2020-02-03 | 2024-02-13 | 10X Genomics, Inc. | Increasing capture efficiency of spatial assays |
WO2021158511A1 (en) | 2020-02-04 | 2021-08-12 | Omniome, Inc. | Flow cells and methods for their manufacture and use |
US11732300B2 (en) | 2020-02-05 | 2023-08-22 | 10X Genomics, Inc. | Increasing efficiency of spatial analysis in a biological sample |
US11835462B2 (en) | 2020-02-11 | 2023-12-05 | 10X Genomics, Inc. | Methods and compositions for partitioning a biological sample |
US11807851B1 (en) | 2020-02-18 | 2023-11-07 | Ultima Genomics, Inc. | Modified polynucleotides and uses thereof |
WO2021168353A2 (en) | 2020-02-20 | 2021-08-26 | Illumina, Inc. | Artificial intelligence-based many-to-many base calling |
WO2021168018A1 (en) | 2020-02-20 | 2021-08-26 | Illumina, Inc. | Hardware execution and acceleration of artificial intelligence-based base caller |
WO2021168014A1 (en) | 2020-02-20 | 2021-08-26 | Illumina, Inc. | Knowledge distillation and gradient pruning-based compression of artificial intelligence-based base caller |
US11749380B2 (en) | 2020-02-20 | 2023-09-05 | Illumina, Inc. | Artificial intelligence-based many-to-many base calling |
US11891654B2 (en) | 2020-02-24 | 2024-02-06 | 10X Genomics, Inc. | Methods of making gene expression libraries |
WO2021170524A1 (en) | 2020-02-25 | 2021-09-02 | Dna Script | Method and apparatus for enzymatic synthesis of polynucleotides |
US11926863B1 (en) | 2020-02-27 | 2024-03-12 | 10X Genomics, Inc. | Solid state single cell method for analyzing fixed biological cells |
WO2021178467A1 (en) | 2020-03-03 | 2021-09-10 | Omniome, Inc. | Methods and compositions for sequencing double stranded nucleic acids |
US11608528B2 (en) | 2020-03-03 | 2023-03-21 | Pacific Biosciences Of California, Inc. | Methods and compositions for sequencing double stranded nucleic acids using RCA and MDA |
US11768175B1 (en) | 2020-03-04 | 2023-09-26 | 10X Genomics, Inc. | Electrophoretic methods for spatial analysis |
WO2021213903A1 (en) | 2020-04-20 | 2021-10-28 | Dna Script | Terminal deoxynucleotidyl transferase variants and uses thereof |
US11773433B2 (en) | 2020-04-22 | 2023-10-03 | 10X Genomics, Inc. | Methods for spatial analysis using targeted RNA depletion |
US11535887B2 (en) | 2020-04-22 | 2022-12-27 | 10X Genomics, Inc. | Methods for spatial analysis using targeted RNA depletion |
WO2021221500A1 (en) | 2020-04-27 | 2021-11-04 | Agendia N.V. | Treatment of her2 negative, mammaprint high risk 2 breast cancer. |
WO2021225886A1 (en) | 2020-05-05 | 2021-11-11 | Omniome, Inc. | Compositions and methods for modifying polymerase-nucleic acid complexes |
WO2021226285A1 (en) | 2020-05-05 | 2021-11-11 | Illumina, Inc. | Equalization-based image processing and spatial crosstalk attenuator |
US11694309B2 (en) | 2020-05-05 | 2023-07-04 | Illumina, Inc. | Equalizer-based intensity correction for base calling |
US11952619B2 (en) | 2020-05-06 | 2024-04-09 | Illumina, Inc. | Arrays with quality control tracers |
WO2021231477A2 (en) | 2020-05-12 | 2021-11-18 | Illumina, Inc. | Generating nucleic acids with modified bases using recombinant terminal deoxynucleotidyl transferase |
US11866767B2 (en) | 2020-05-22 | 2024-01-09 | 10X Genomics, Inc. | Simultaneous spatio-temporal measurement of gene expression and cellular activity |
US11608520B2 (en) | 2020-05-22 | 2023-03-21 | 10X Genomics, Inc. | Spatial analysis to detect sequence variants |
US11624086B2 (en) | 2020-05-22 | 2023-04-11 | 10X Genomics, Inc. | Simultaneous spatio-temporal measurement of gene expression and cellular activity |
US11560592B2 (en) | 2020-05-26 | 2023-01-24 | 10X Genomics, Inc. | Method for resetting an array |
US11692218B2 (en) | 2020-06-02 | 2023-07-04 | 10X Genomics, Inc. | Spatial transcriptomics for antigen-receptors |
US11608498B2 (en) | 2020-06-02 | 2023-03-21 | 10X Genomics, Inc. | Nucleic acid library methods |
US11512308B2 (en) | 2020-06-02 | 2022-11-29 | 10X Genomics, Inc. | Nucleic acid library methods |
US11859178B2 (en) | 2020-06-02 | 2024-01-02 | 10X Genomics, Inc. | Nucleic acid library methods |
US11840687B2 (en) | 2020-06-02 | 2023-12-12 | 10X Genomics, Inc. | Nucleic acid library methods |
US11845979B2 (en) | 2020-06-02 | 2023-12-19 | 10X Genomics, Inc. | Spatial transcriptomics for antigen-receptors |
US11407992B2 (en) | 2020-06-08 | 2022-08-09 | 10X Genomics, Inc. | Methods of determining a surgical margin and methods of use thereof |
US11624063B2 (en) | 2020-06-08 | 2023-04-11 | 10X Genomics, Inc. | Methods of determining a surgical margin and methods of use thereof |
US11781130B2 (en) | 2020-06-08 | 2023-10-10 | 10X Genomics, Inc. | Methods of determining a surgical margin and methods of use thereof |
US11492612B1 (en) | 2020-06-08 | 2022-11-08 | 10X Genomics, Inc. | Methods of determining a surgical margin and methods of use thereof |
WO2021252617A1 (en) | 2020-06-09 | 2021-12-16 | Illumina, Inc. | Methods for increasing yield of sequencing libraries |
US11434524B2 (en) | 2020-06-10 | 2022-09-06 | 10X Genomics, Inc. | Methods for determining a location of an analyte in a biological sample |
WO2021254934A1 (en) | 2020-06-16 | 2021-12-23 | Dna Script | Systems, apparatus and kits for enzymatic polynucleotide synthesis |
WO2021259881A1 (en) | 2020-06-22 | 2021-12-30 | Illumina Cambridge Limited | Nucleosides and nucleotides with 3' acetal blocking group |
US11787831B2 (en) | 2020-06-22 | 2023-10-17 | Illumina Cambridge Limited | Nucleosides and nucleotides with 3′ acetal blocking group |
US11661626B2 (en) | 2020-06-25 | 2023-05-30 | 10X Genomics, Inc. | Spatial analysis of DNA methylation |
US11408029B2 (en) | 2020-06-25 | 2022-08-09 | 10X Genomics, Inc. | Spatial analysis of DNA methylation |
WO2022006081A1 (en) | 2020-06-30 | 2022-01-06 | Illumina, Inc. | Catalytically controlled sequencing by synthesis to produce scarless dna |
WO2022006495A1 (en) | 2020-07-02 | 2022-01-06 | Illumina, Inc. | A method to calibrate nucleic acid library seeding efficiency in flowcells |
US11761038B1 (en) | 2020-07-06 | 2023-09-19 | 10X Genomics, Inc. | Methods for identifying a location of an RNA in a biological sample |
WO2022010965A1 (en) | 2020-07-08 | 2022-01-13 | Illumina, Inc. | Beads as transposome carriers |
WO2022013094A1 (en) | 2020-07-15 | 2022-01-20 | Dna Script | Massively parallel enzymatic synthesis of polynucleotides |
WO2022031955A1 (en) | 2020-08-06 | 2022-02-10 | Illumina, Inc. | Preparation of rna and dna sequencing libraries using bead-linked transposomes |
WO2022040176A1 (en) | 2020-08-18 | 2022-02-24 | Illumina, Inc. | Sequence-specific targeted transposition and selection and sorting of nucleic acids |
WO2022053610A1 (en) | 2020-09-11 | 2022-03-17 | Illumina Cambridge Limited | Methods of enriching a target sequence from a sequencing library using hairpin adaptors |
WO2022063835A1 (en) | 2020-09-22 | 2022-03-31 | Dna Script | Stabilized n-terminally truncated terminal deoxynucleotidyl transferase variants and uses thereof |
US11926822B1 (en) | 2020-09-23 | 2024-03-12 | 10X Genomics, Inc. | Three-dimensional spatial analysis |
WO2022087150A2 (en) | 2020-10-21 | 2022-04-28 | Illumina, Inc. | Sequencing templates comprising multiple inserts and compositions and methods for improving sequencing throughput |
WO2022090057A1 (en) | 2020-10-26 | 2022-05-05 | Dna Script | Novel variants of endonuclease v and uses thereof |
WO2022090323A1 (en) | 2020-10-29 | 2022-05-05 | Dna Script | Enzymatic synthesis of polynucleotide probes |
US11827935B1 (en) | 2020-11-19 | 2023-11-28 | 10X Genomics, Inc. | Methods for spatial analysis using rolling circle amplification and detection probes |
US11680260B2 (en) | 2020-12-21 | 2023-06-20 | 10X Genomics, Inc. | Methods, compositions, and systems for spatial analysis of analytes in a biological sample |
US11618897B2 (en) | 2020-12-21 | 2023-04-04 | 10X Genomics, Inc. | Methods, compositions, and systems for capturing probes and/or barcodes |
US11873482B2 (en) | 2020-12-21 | 2024-01-16 | 10X Genomics, Inc. | Methods, compositions, and systems for spatial analysis of analytes in a biological sample |
WO2022155331A1 (en) | 2021-01-13 | 2022-07-21 | Pacific Biosciences Of California, Inc. | Surface structuring with colloidal assembly |
WO2022165188A1 (en) | 2021-01-29 | 2022-08-04 | Illumina, Inc. | Methods, compositions and kits to improve seeding efficiency of flow cells with polynucleotides |
WO2022169972A1 (en) | 2021-02-04 | 2022-08-11 | Illumina, Inc. | Long indexed-linked read generation on transposome bound beads |
WO2022174054A1 (en) | 2021-02-13 | 2022-08-18 | The General Hospital Corporation | Methods and compositions for in situ macromolecule detection and uses thereof |
WO2022197752A1 (en) | 2021-03-16 | 2022-09-22 | Illumina, Inc. | Tile location and/or cycle based weight set selection for base calling |
US11739381B2 (en) | 2021-03-18 | 2023-08-29 | 10X Genomics, Inc. | Multiplex capture of gene and protein expression from a biological sample |
WO2022204032A1 (en) | 2021-03-22 | 2022-09-29 | Illumina Cambridge Limited | Methods for improving nucleic acid cluster clonality |
WO2022212269A1 (en) | 2021-03-29 | 2022-10-06 | Illumina, Inc. | Improved methods of library preparation |
WO2022212280A1 (en) | 2021-03-29 | 2022-10-06 | Illumina, Inc. | Compositions and methods for assessing dna damage in a library and normalizing amplicon size bias |
WO2022212330A1 (en) | 2021-03-30 | 2022-10-06 | Illumina, Inc. | Improved methods of isothermal complementary dna and library preparation |
WO2022212402A1 (en) | 2021-03-31 | 2022-10-06 | Illumina, Inc. | Methods of preparing directional tagmentation sequencing libraries using transposon-based technology with unique molecular identifiers for error correction |
WO2022207934A1 (en) | 2021-04-02 | 2022-10-06 | Dna Script | Methods and kits for enzymatic synthesis of g4-prone polynucleotides |
WO2022213027A1 (en) | 2021-04-02 | 2022-10-06 | Illumina, Inc. | Machine-learning model for detecting a bubble within a nucleotide-sample slide for sequencing |
DE102022107811A1 (en) | 2021-04-02 | 2022-10-06 | Dna Script | METHODS AND KITS FOR THE ENZYMATIC SYNTHESIS OF G4 TENDERING POLYNUCLEOTIDS |
US11515010B2 (en) | 2021-04-15 | 2022-11-29 | Illumina, Inc. | Deep convolutional neural networks to predict variant pathogenicity using three-dimensional (3D) protein structures |
WO2022235163A1 (en) | 2021-05-07 | 2022-11-10 | Agendia N.V. | Endocrine treatment of hormone receptor positive breast cancer typed as having a low risk of recurrence |
WO2022240764A1 (en) | 2021-05-10 | 2022-11-17 | Pacific Biosciences Of California, Inc. | Single-molecule seeding and amplification on a surface |
WO2022240766A1 (en) | 2021-05-10 | 2022-11-17 | Pacific Biosciences Of California, Inc. | Dna amplification buffer replenishment during rolling circle amplification |
WO2022243480A1 (en) | 2021-05-20 | 2022-11-24 | Illumina, Inc. | Compositions and methods for sequencing by synthesis |
WO2022265994A1 (en) | 2021-06-15 | 2022-12-22 | Illumina, Inc. | Hydrogel-free surface functionalization for sequencing |
WO2022272260A1 (en) | 2021-06-23 | 2022-12-29 | Illumina, Inc. | Compositions, methods, kits, cartridges, and systems for sequencing reagents |
WO2023278927A1 (en) | 2021-06-29 | 2023-01-05 | Illumina Software, Inc. | Signal-to-noise-ratio metric for determining nucleotide-base calls and base-call quality |
WO2023278184A1 (en) | 2021-06-29 | 2023-01-05 | Illumina, Inc. | Methods and systems to correct crosstalk in illumination emitted from reaction sites |
WO2023278608A1 (en) | 2021-06-29 | 2023-01-05 | Illumina, Inc. | Self-learned base caller, trained using oligo sequences |
WO2023278966A1 (en) | 2021-06-29 | 2023-01-05 | Illumina, Inc. | Machine-learning model for generating confidence classifications for genomic coordinates |
WO2023278609A1 (en) | 2021-06-29 | 2023-01-05 | Illumina, Inc. | Self-learned base caller, trained using organism sequences |
WO2023287617A1 (en) | 2021-07-13 | 2023-01-19 | Illumina, Inc. | Methods and systems for real time extraction of crosstalk in illumination emitted from reaction sites |
WO2023003757A1 (en) | 2021-07-19 | 2023-01-26 | Illumina Software, Inc. | Intensity extraction with interpolation and adaptation for base calling |
WO2023004357A1 (en) | 2021-07-23 | 2023-01-26 | Illumina, Inc. | Methods for preparing substrate surface for dna sequencing |
WO2023004323A1 (en) | 2021-07-23 | 2023-01-26 | Illumina Software, Inc. | Machine-learning model for recalibrating nucleotide-base calls |
WO2023009758A1 (en) | 2021-07-28 | 2023-02-02 | Illumina, Inc. | Quality score calibration of basecalling systems |
WO2023014741A1 (en) | 2021-08-03 | 2023-02-09 | Illumina Software, Inc. | Base calling using multiple base caller models |
WO2023020728A1 (en) | 2021-08-14 | 2023-02-23 | Illumina, Inc. | Polymerases, compositions, and methods of use |
WO2023023500A1 (en) | 2021-08-17 | 2023-02-23 | Illumina, Inc. | Methods and compositions for identifying methylated cytosines |
US11753673B2 (en) | 2021-09-01 | 2023-09-12 | 10X Genomics, Inc. | Methods, compositions, and kits for blocking a capture probe on a spatial array |
US11840724B2 (en) | 2021-09-01 | 2023-12-12 | 10X Genomics, Inc. | Methods, compositions, and kits for blocking a capture probe on a spatial array |
WO2023035110A1 (en) | 2021-09-07 | 2023-03-16 | 深圳华大智造科技股份有限公司 | Method for analyzing sequence of target polynucleotide |
WO2023035108A1 (en) | 2021-09-07 | 2023-03-16 | 深圳华大智造科技股份有限公司 | Method for analyzing sequence of target polynucleotide |
WO2023044229A1 (en) | 2021-09-17 | 2023-03-23 | Illumina, Inc. | Automatically identifying failure sources in nucleotide sequencing from base-call-error patterns |
WO2023049558A1 (en) | 2021-09-21 | 2023-03-30 | Illumina, Inc. | A graph reference genome and base-calling approach using imputed haplotypes |
WO2023049215A1 (en) | 2021-09-22 | 2023-03-30 | Illumina, Inc. | Compressed state-based base calling |
WO2023049212A2 (en) | 2021-09-22 | 2023-03-30 | Illumina, Inc. | State-based base calling |
WO2023052427A1 (en) | 2021-09-30 | 2023-04-06 | Illumina Cambridge Limited | Polynucleotide sequencing |
WO2023056328A2 (en) | 2021-09-30 | 2023-04-06 | Illumina, Inc. | Solid supports and methods for depleting and/or enriching library fragments prepared from biosamples |
WO2023069927A1 (en) | 2021-10-20 | 2023-04-27 | Illumina, Inc. | Methods for capturing library dna for sequencing |
US11455487B1 (en) | 2021-10-26 | 2022-09-27 | Illumina Software, Inc. | Intensity extraction and crosstalk attenuation using interpolation and adaptation for base calling |
EP4174189A1 (en) | 2021-10-28 | 2023-05-03 | Volker, Leen | Enzyme directed biomolecule labeling |
WO2023081485A1 (en) | 2021-11-08 | 2023-05-11 | Pacific Biosciences Of California, Inc. | Stepwise sequencing of a polynucleotide with a homogenous reaction mixture |
WO2023083997A2 (en) | 2021-11-10 | 2023-05-19 | Dna Script | Novel terminal deoxynucleotidyl |
WO2023083999A2 (en) | 2021-11-10 | 2023-05-19 | Dna Script | Novel terminal deoxynucleotidyl transferase (tdt) variants |
WO2023085932A1 (en) | 2021-11-10 | 2023-05-19 | Omnigen B.V. | Prediction of response following folfirinox treatment in cancer patients |
WO2023102354A1 (en) | 2021-12-02 | 2023-06-08 | Illumina Software, Inc. | Generating cluster-specific-signal corrections for determining nucleotide-base calls |
WO2023122362A1 (en) | 2021-12-23 | 2023-06-29 | Illumina Software, Inc. | Facilitating secure execution of external workflows for genomic sequencing diagnostics |
WO2023122363A1 (en) | 2021-12-23 | 2023-06-29 | Illumina Software, Inc. | Dynamic graphical status summaries for nucelotide sequencing |
WO2023129896A1 (en) | 2021-12-28 | 2023-07-06 | Illumina Software, Inc. | Machine learning model for recalibrating nucleotide base calls corresponding to target variants |
WO2023129764A1 (en) | 2021-12-29 | 2023-07-06 | Illumina Software, Inc. | Automatically switching variant analysis model versions for genomic analysis applications |
WO2023141154A1 (en) | 2022-01-20 | 2023-07-27 | Illumina Cambridge Limited | Methods of detecting methylcytosine and hydroxymethylcytosine by sequencing |
BE1030246A1 (en) | 2022-02-04 | 2023-08-30 | Leen Volker | POLYMER-ASSISTED BIOMOLECULE ANALYSIS |
WO2023164492A1 (en) | 2022-02-25 | 2023-08-31 | Illumina, Inc. | Machine-learning models for detecting and adjusting values for nucleotide methylation levels |
WO2023164660A1 (en) | 2022-02-25 | 2023-08-31 | Illumina, Inc. | Calibration sequences for nucelotide sequencing |
WO2023183937A1 (en) | 2022-03-25 | 2023-09-28 | Illumina, Inc. | Sequence-to-sequence base calling |
WO2023196572A1 (en) | 2022-04-07 | 2023-10-12 | Illumina Singapore Pte. Ltd. | Altered cytidine deaminases and methods of use |
WO2023212601A1 (en) | 2022-04-26 | 2023-11-02 | Illumina, Inc. | Machine-learning models for selecting oligonucleotide probes for array technologies |
WO2023209606A1 (en) | 2022-04-29 | 2023-11-02 | Illumina Cambridge Limited | Methods and systems for encapsulating lyophilised microspheres |
WO2023220627A1 (en) | 2022-05-10 | 2023-11-16 | Illumina Software, Inc. | Adaptive neural network for nucelotide sequencing |
WO2023224488A1 (en) | 2022-05-19 | 2023-11-23 | Agendia N.V. | Dna repair signature and prediction of response following cancer therapy |
WO2023224487A1 (en) | 2022-05-19 | 2023-11-23 | Agendia N.V. | Prediction of response to immune therapy in breast cancer patients |
WO2023235353A2 (en) | 2022-06-03 | 2023-12-07 | Illumina, Inc. | Circulating rna biomarkers for preeclampsia |
WO2023239917A1 (en) | 2022-06-09 | 2023-12-14 | Illumina, Inc. | Dependence of base calling on flow cell tilt |
WO2023250504A1 (en) | 2022-06-24 | 2023-12-28 | Illumina Software, Inc. | Improving split-read alignment by intelligently identifying and scoring candidate split groups |
WO2024006705A1 (en) | 2022-06-27 | 2024-01-04 | Illumina Software, Inc. | Improved human leukocyte antigen (hla) genotyping |
WO2024006779A1 (en) | 2022-06-27 | 2024-01-04 | Illumina, Inc. | Accelerators for a genotype imputation model |
WO2024006769A1 (en) | 2022-06-27 | 2024-01-04 | Illumina Software, Inc. | Generating and implementing a structural variation graph genome |
WO2024015962A1 (en) | 2022-07-15 | 2024-01-18 | Pacific Biosciences Of California, Inc. | Blocked asymmetric hairpin adaptors |
WO2024026356A1 (en) | 2022-07-26 | 2024-02-01 | Illumina, Inc. | Rapid single-cell multiomics processing using an executable file |
US11952627B2 (en) | 2023-08-11 | 2024-04-09 | 10X Genomics, Inc. | Methods for identifying a location of an RNA in a biological sample |
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CA2044616A1 (en) | 1991-04-27 |
EP0450060A1 (en) | 1991-10-09 |
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