WO1997023608A1 - Compositions and methods for targeting gene delivery vehicles using covalently bound targeting elements - Google Patents

Compositions and methods for targeting gene delivery vehicles using covalently bound targeting elements Download PDF

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Publication number
WO1997023608A1
WO1997023608A1 PCT/US1996/020543 US9620543W WO9723608A1 WO 1997023608 A1 WO1997023608 A1 WO 1997023608A1 US 9620543 W US9620543 W US 9620543W WO 9723608 A1 WO9723608 A1 WO 9723608A1
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Prior art keywords
linking agent
gene delivery
delivery vehicle
targeting
gdv
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PCT/US1996/020543
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French (fr)
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Margaret D. Moore
James G. Respess
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Chiron Corporation
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/87Introduction of foreign genetic material using processes not otherwise provided for, e.g. co-transformation
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K47/00Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
    • A61K47/50Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
    • A61K47/51Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
    • A61K47/62Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being a protein, peptide or polyamino acid
    • A61K47/65Peptidic linkers, binders or spacers, e.g. peptidic enzyme-labile linkers

Definitions

  • the present invention relates generally to compositions and methods for targeting gene delivery vehicles to one or more specific cell or tissue types. Specifically, the invention concerns compositions and methods which utilize targeting elements covalently bound to the surface of a gene delivery vehicle via a multifunctional linking agent.
  • a recombinant retroviral vector expressing HIV gp 160/120 envelope proteins was shown to elicit a cytotoxic T-cell response against cells infected with HIV in Warner et al , (AIDS Res. Hum. Retro. 7:645, 1991).
  • a recombinant retroviral vector expressing the hypoxanthine phosphorelase transferase (HPRT) gene was transduced into bone marrow cells and shown to produce adequate levels of HPRT to correct the metabolic defect, known as Lesch-Nyhan syndrome, in culture.
  • HPRT hypoxanthine phosphorelase transferase
  • one difficulty with recombinant retroviruses and other gene delivery vehicles is that they are difficult to target to a selected cell type or tissue where it is desired to affect treatment.
  • the present invention provides compositions and methods for targeting gene delivery vehicles to one or more specific cell or tissue types. It is the object ofthe present invention to provide a gene delivery vehicle to which a targeting element is covalently bound by a linking agent such that the targeting element is capable of interacting with a molecule present on the surface of a target cell.
  • the targeting element is covalently bound to the surface ofthe gene delivery vehicle by a multifunctional linking agent.
  • the multifunctional linking agent is selected from the group consisting of a homobifunctional linking agent, a heterobifunctional linking agent and a trifunctional linking agent.
  • the multifunctional linking agent may be selected from the group consisting of 4(4-N-maleimidophenyl)butyric acid hydride*HCl*l/2 dioxane (MPBH), succinimidyl 4-(N-maleimidomethyl)cyclohexane-l- carboxylate (SMCC), sulfosuccinimidyl (4(azidosalicylamido)hexanoate (Sulfo-NHS-LC- ASA), sulfosuccinimidyl-2-[6-(biotinamido)-2-(p-azidobenzamido)-hexanoamido]ethyl- l,3'-dithiopropionate (Sulfo-SBED), and disuccinimidyl suberate (DSS), N-succinimidyl-3- (2-pyridyldithio)-propionate (SPDP)), sulf
  • MPBH
  • the targeting element is covalently bound to a gene delivery vehicle by a multifunctional linking agent further comprising a carbohydrate linking agent.
  • the carbohydrate ofthe carbohydrate linking agent is a monosaccharide, a disaccharide, or an oligosaccharide.
  • the carbohydrate is a monosaccharide
  • the monosaccharide is preferably selected from the group consisting of fructosamine, glucosamine, galactosamine, and mannosamine.
  • the carbohydrate is a disaccharide
  • the disaccharide is preferably selected from the group consisting of aminated sucrose, animated maltose, aminated trehalose, and aminated lactose.
  • the oligosaccharide is preferably selected from the group consisting of N-acetyl-D-glucosamine, N-acetyl-D-galactosamine, aminated N- acetylmuramic acid, and aminated N-acetyl-D-neuraminic acid.
  • any gene delivery vehicle is suitable for uses in this invention.
  • Preferred gene delivery vehicles include recombinant viral vectors, nucleic acids associated with liposomes, nucleic acids associated with polycations, modified bacteriophage, and bacteria.
  • a recombinant viral vector is utilized, preferably it is a recombinant virus derived from a virus selected from the group consisting of adenovirus, astrovirus, coronavirus, hepadnevirus, orthomyxovirus, papovavirus, paramyxovirus, parvovirus, picornavirus, and poxvirus.
  • the recombinant viral vector is a togavirus or a retrovirus.
  • the alphavirus is preferably selected from the group consisting of Sindbis virus, Semliki Forest virus, Middleberg virus, Ross River virus, and Venezuelan equine encephalitis virus
  • the retrovirus is preferably selected from the group consisting of avian leukosis virus, bovine leukemia virus, murine leukemia virus, mink-cell focus-inducing virus, murine sarcoma virus, reticuloendotheliosis virus, gibbon ape leukemia virus, Mason-Pfizer monkey virus, rous sarcoma virus, baboon endogenous virus, endogenous feline retrovirus (e.g., RDl 14), and mouse or rat gL30 sequences used as a retroviral vector.
  • the retrovirus is a murine leukemia retrovirus
  • the virus is preferably selected from the group consisting of Abelson, Friend, Graffi, Kristen, Rauscher, and Moloney leukemia retrovirus, with the latter being particularly preferred. It is preferable that the recombinant viral vector is replication defective.
  • the gene delivery vehicle further comprises a fusagenic protein.
  • fusagenic proteins include those selected from the group consisting of ecotropic murine retrovirus envelope proteins, herpes simplex virus gH fusagenic proteins, he ⁇ es simplex virus gL fusagenic proteins, Epstein-Barr fusagenic proteins, measles virus fusagenic proteins, and malarial sporozoite fusagenic proteins.
  • suitable targeting elements include proteins, peptides, carbohydrates, and small molecules which specifically interact with a molecule, e.g., a receptor, present on the surface ofthe cell or tissue type(s) to be targeted.
  • the targeting element employed is a protein.
  • the protein-based targeting element is selected from the group consisting of a receptor, a ligand, and an antibody (or antigen binding domain thereof).
  • the targeting element is a receptor, the receptor is preferably selected from the group consisting of CD4, CD8, CD21, and fimbriae.
  • the targeting element is a ligand
  • the ligand is preferably selected from a cytokine, lymphokine, polypeptide hormone, peptide or nonprotein molecule.
  • Representative cytokines include IL-l type II, IL-2b, IL-3, IL-6, IL-7, IL-8, IL- 10, and IL-l 2.
  • Representative lymphokines include GM-CSF, G-CSF, M-CSF, SCF, and the flk-2 ligand.
  • Representative polypeptide hormones include FSH, GH, luteinizing hormone, MSH, erythropoietin, nerve growth factor, VEGF, UP A, and epidermal growth factor.
  • polypeptides include neuromedin, insulin, transferrin, asialoglycoprotein, lectin, and collagen and a representative nonprotein molecule is LDL.
  • the targeting element is a monoclonal antibody
  • the monoclonal antibody is preferably selected from the group consisting of 12.8, MylO, HPCA-2, anti-CD8, 4D5,
  • target cells are disease associated, e.g., neoplastic cells, autoimmune cells, or cells infected with a viral or bacterial pathogen.
  • targeted cells are cells which normally express, or do not express, as the case may be, a particular gene product in an appropriate physiological amount, for example, b-islet cells in the pancreas which produce insulin in non-diabetic animals, pituitary cells which express growth hormone, and hematopoietic tissue which expresses ADA.
  • compositions which comprise a targeted gene delivery vehicle in a pharmaceutically acceptable carrier.
  • the pharmaceutical composition is lyophilized, wherein the targeted gene delivery vehicle upon reconstitution is suitable for administration to animals.
  • compositions described herein comprise mixing a gene delivery vehicle and a targeting element in the presence of a multifunctional linking agent under conditions which allow the multifunctional linking agent to become covalently bound to both the gene delivery vehicle and targeting element(s).
  • Still other aspects ofthe invention concern methods for administering a therapeutically effective amount ofthe targeted gene delivery vehicles.
  • targeted gene delivery vehicles are administered to animals in order to treat disease.
  • Other emboidments concern the prophylactic use of targeted gene delivery vehicles in animals.
  • Representative diseases which may be treated using targeted gene delivery vehicles include diseases selected from the group consisting of an infectious disease, cancer, a genetic disease, an autoimmune disease, and a cardiovascular disease.
  • the present invention provides gene delivery vehicles (GDVs) to which targeting elements have been covalently bound to the exterior surface of he GDV by a multifunctional linking agent such that the GDV is be targeted to a selected cell or tissue type.
  • GDVs gene delivery vehicles
  • a gene delivery vehicle is a composition capable of delivering a nucleic acid molecule to a eukaryotic cell.
  • Representative examples of gene delivery vehicles include recombinant viral vectors (e.g., retroviruses; see WO 89/09271, and alphaviruses such as Sindbis; see WO 95/07994), other recombinant and non-recombinant viral systems (e.g., adenovirus; see WO 93/19191), nucleic acid molecules associated with one or more condensing agents (see WO 93/03709), nucleic acid molecules associated with liposomes (Wang, et al, PNAS 84:7%51, 1987), modified bacteriophage, or bacteria.
  • recombinant viral vectors e.g., retroviruses; see WO 89/09271, and alphaviruses such as Sindbis; see WO 95/07994
  • the GDV carries a nucleic acid molecule to be transferred to a target cell.
  • the nucleic acid molecule may itself exhibit biological activity which directly effects the target cell (e.g., a ribozyme, antisense RNA, etc.)
  • the nucleic acid molecule may encode a desired substance such as a protein, (e.g., an enzyme or an antibody) and/or a nucleic acid having biological activity which, once expressed, will affect the target cell.
  • a desired substance such as a protein, (e.g., an enzyme or an antibody) and/or a nucleic acid having biological activity which, once expressed, will affect the target cell.
  • nucleic acids which themselves have biological activity include an antisense nucleic acid molecules and ribozymes.
  • the GDV is a recombinant viral vector derived from a virus such as an astrovirus, coronavirus, orthomyxovirus, papovavirus, paramyxovirus, parvovirus, picornavirus, poxvirus, retrovirus, togavirus or adenovirus.
  • the recombinant viral vector is a recombinant retroviral vector.
  • Retroviral GDVs may be readily constructed from a wide variety of retroviruses, including for example, B, C, and D type retroviruses, as well as spumaviruses and lentiviruses (see RNA Tumor Viruses, Second Edition, Cold Spring Harbor Laboratory, 1985).
  • retroviruses include those discussed in RNA Tumor Viruses, supra, as well as a variety of xenotropic retroviruses (e.g., NZB-X1, NZB-X2 and NZB9.] (see O'Neill et al, J. Vir. 53: 100, 1985)) and polytropic retroviruses (e.g., MCF and MCF-MLV (see Kelly et al, J. Vir. 45( ⁇ ):29l, 1983)).
  • xenotropic retroviruses e.g., NZB-X1, NZB-X2 and NZB9.
  • polytropic retroviruses e.g., MCF and MCF-MLV (see Kelly et al, J. Vir. 45( ⁇ ):29l, 1983)
  • retroviruses may be readily obtained from depositories or collections such as the American Type Culture Collection (ATCC, Rockville, MD), or isolated from known sources using commonly available techniques.
  • retroviral GDVs which may be utilized in practicing the present invention are described in U.S. Patent Nos. 5,219,740 and 4,777,127, EP 345,242 and WO 91/02805.
  • retroviruses which include avian leukosis virus (ATCC Nos. VR-535 and VR-247), bovine leukemia virus (VR-1315), murine leukemia virus (MLV), mink-cell focus-inducing virus (Koch et al, J. Vir. 49:828, 1984; and Oliff et al, J. Vir. 48:542, 1983), murine sarcoma virus (ATCC Nos.
  • VR-844, 45010 and 45016 reticuloendotheliosis virus (ATCC Nos VR-994, VR-770 and 4501 1), rous sarcoma virus, Mason-Pfizer monkey virus, baboon endogenous virus, endogenous feline retrovirus (e.g., RD1 14), and mouse or rat gL30 sequences used as a retroviral vector.
  • Particularly preferred strains of MLV from which recombinant retroviruses can be generated include 4070A and 1504A (Hartley and Rowe, J. Vir. 19:19, 1976), Abelson (ATCC No. VR-999), Friend (ATCC No. VR-245), Graffi (Ru et al. , J. Vir. 67:4722, 1993 ; and
  • a particularly preferred non-mouse retrovirus is rous sarcoma virus.
  • Preferred rous sarcoma viruses include Bratislava (Manly et al , J. Vir.
  • retroviral GDVs Any of the above retroviruses may be readily utilized in order to assemble or construct retroviral GDVs given the disclosure provided herein and standard recombinant techniques (e.g., Sambrook et al, Molecular Cloning: A Laboratory Manual, 2d ed., Cold Spring Harbor Laboratory Press, 1989 and Kunkle, PNAS 52:488, 1985) known in the art.
  • portions ofthe retroviral GDVs may be derived from different retroviruses.
  • recombinant retroviral vector LTRs may be derived from a murine sarcoma virus, a tRNA binding site from a rous sarcoma virus, a packaging signal from a MLV, and an origin of second strand synthesis from an avian leukosis virus.
  • These recombinant retroviral vectors may be used to generate transduction competent retroviral vector particles by introducing them into appropriate packaging cell lines (see U.S. Patent No. 5,591,624, issued January 1, 1996).
  • recombinant retroviruses can be produced which direct the site-specific integration ofthe recombinant retroviral genome into specific regions of the host cell DNA.
  • a retroviral vector construct should include a 5' LTR, a tRNA binding site, a packaging signal, a nucleic acid molecule encoding one or more genes of interest, an origin of second strand DNA synthesis, and a 3' LTR.
  • a retroviral vector construct may also include transcriptional promoter/enhancer or locus defining element(s), or other elements which control gene expression by means such as alternate splicing, nuclear RNA export, post-translational modification of messenger, or post-transcriptional modification of protein.
  • a retroviral vector construct may also include one or more selectable markers that confer resistance of vector transduced or transfected cells to thymidine kinase (TK), hygromycin, phleomycin, histidinol, or dihydrofolate reductase (DHFR), as well as one or more specific restriction sites and a translation termination sequence.
  • TK thymidine kinase
  • hygromycin hygromycin
  • phleomycin histidinol
  • DHFR dihydrofolate reductase
  • the GDV is derived from a togavirus.
  • Preferred togaviruses include alphaviruses, in particular, those described in WO 95/07994 filed September 15, 1994.
  • Sindbis viral vectors typically comprise a 5' sequence capable of initiating Sindbis virus transcription, a nucleotide sequence encoding Sindbis non-structural proteins, a viral junction region inactivated so as to prevent subgenomic fragment transcription, and a Sindbis RNA polymerase recognition sequence.
  • the viral junction region may be modified so that subgenomic fragment transcription is reduced, increased, or maintained.
  • an alphavirus-derived GDV may comprise a first viral junction region which has been inactivated in order to prevent transcription ofthe subgenomic fragment and a second viral junction region which has been modified such that subgenomic fragment transcription is reduced.
  • an alphavirus-derived GDV may also include a 5' promoter capable of initiating synthesis of viral RNA from cDN A and a 3' sequence which controls transcription termination.
  • the recombinant alphaviral vectors do not encode structural proteins and the nucleic acid molecule may be located downstream from the viral junction region.
  • the nucleic acid molecule encoding the gene(s) of interest may be located downstream from the second viral junction region.
  • the vector construct may further comprise a polylinker located between the viral junction region and the nucleic acid molecule.
  • the polylinker does not contain restriction sites found in the corresponding naturally occuring alphavirus or recombinant vector backbones made therefrom.
  • togaviral vectors that may be utilized in the present invention include those derived from Semliki Forest virus (ATCC VR-67; ATCC VR-1247),
  • Sindbis vector constructs may be readily prepared essentially as described in WO95/07994.
  • the recombinant viral vector may be a recombinant adenoviral vector.
  • adenoviral vector Such vectors may be readily prepared and utilized given the disclosure provided herein (see Berkner, Biotechniques 6:616, 1988, and Rosenfeld et al, Science 252:431, 1991, WO 93/07283, WO 93/06223, and WO 93/07282).
  • Other viral vectors suitable for use in the present invention include, for example, those derived from poliovirus (Evans et al, Nature 339:385, 1989, and Sabin et al, J. Biol. Standardization 7:115, 1973) (ATCC VR-58); rhinovirus (Arnold et al, J. Cell. Biochem.
  • the GDV comprises a nucleic acid molecule associated with a condensing agent (e.g., polycations).
  • a condensing agent e.g., polycations. Polycations condense the nucleic acid molecule by masking the negatively charged phosphate backbone, permitting the molecule to fold into a more compact form.
  • the GDV is a nucleic acid molecule associated with a liposome.
  • Liposomes are small, lipid vesicles comprised of an aqueous compartment enclosed by a lipid bilayer, typically spherical or slightly elongated structures several hundred Angstroms in diameter.
  • a liposome can fuse with the plasma membrane of a cell or with the membrane of an endocytic vesicle within a cell which has internalized the liposome, thereby releasing its contents into the cytoplasm.
  • the liposome membrane Prior to interaction with the surface ofa cell, however, the liposome membrane acts as a relatively impermeable barrier which sequesters and protects its contents, for example, from degradative enzymes in the plasma.
  • Liposomes can encapsulate a variety of nucleic acid molecules including DNA, RNA, plasmids, and vectors such those described in the present invention.
  • the GDV is a modified bacteriophage which can deliver therapeutic nucleic acid molecules to eukaryotic cells.
  • One such representative bacteriophage system (based on bacteriophage lambda) is described in co-owned U.S.S.N. 08/366,522, filed December 30, 1994.
  • the only lambda nucleotide sequences contained in the nucleic acid molecule of such a lambda-based system are two cos sites, one at the 5' and 3' ends ofthe linear DNA to be packaged, leaving up to about 50 Kb available for therapeutic gene(s) or other sequences.
  • the GDV is a bacterial cell comprising a nucleic acid molecule for delivery to eukaryotic cells.
  • the bacterial cell may express and present a cytotoxic agent, such as an anti-tumor agent, on its surface or, alternatively, secrete it into the surrounding medium.
  • Representative examples of bacterial cell GDVs include BCG (Stover, Nature 351:456, 1991) and Salmonella (Newton et al, Science 244:70, 1989).
  • a targeted GDV may carry a eukaryotic layered vector initiation system or other nucleic acid expression systems. See WO 95/07994 for additional details in the construction of such systems.
  • GDVs useful in the practice of this invention above may include or contain one or more nucleic acid molecules.
  • a wide variety of nucleic acid molecules may be utilized within the context ofthe present invention, including, for example, those which themselves have biological activity or which encode gene products (e.g., proteins, anti-sense RNAs, and ribozymes, among others).
  • the GDVs ofthe invention can contain a variety of nulceic acid sequences of therapeutic interest. See e.g., WO 91/02805, WO 95/07994, WO 96/20414 and U.S. Patent Nos. 5,399,346, 5,580,859, 5,192,553 for a description of such nucleic acid sequences.
  • a targeted GDV may deliver a ribozyme directly to the target cell.
  • a GDV may deliver a nucleic acid molecule which encodes one or more ribozymes (Haseloff and Gerlach, Nature 334:585, 1989).
  • the nucleic acid molecule encodes one or more proteins.
  • Representative proteins which may be encoded by a nucleic acid molecule include, for example, receptors, cytotoxins, immunomodulatory factors (e.g., lymphokines and cytokines), immunoreactive proteins (e.g., inhibitory, immunogenic and immunosuppressive polypeptides) and replacement proteins (e.g., polypeptide hormones and enzymes expressed at insufficient levels in patients' suffering from the corresponding disease).
  • receptors many are involved in cell growth, either by monitoring the external environment and signaling the cell to respond appropriately. Other receptors are intracellular in nature. If either the monitoring or signaling mechanisms fail, the cell will no longer respond appropriately to particular signals and may therefore exhibit uncontrolled or aberrant growth.
  • receptors or receptor-like structures may function as altered cellular components, including, for example, neu (also referred to as the human epidermal growth factor receptor (HER) Slamon et al, Science 244:707, 1989; Slamon et al , Cancer Cells 7:371 , 1989; Shih et al , Nature 290:261 , 1981 Schechter, Nature
  • neu also referred to as the human epidermal growth factor receptor (HER) Slamon et al, Science 244:707, 1989; Slamon et al , Cancer Cells 7:371 , 1989
  • Shih et al Nature 290:261 , 1981 Schechter, Nature
  • the targeted GDV contains a nucleic acid molecule encoding a product which is not itself toxic, but when processed or modified by a protein, such as a protease specific to a viral or other pathogen, is converted into a toxic form.
  • a GDV may carry a nucleic acid molecule encoding a proprotein which becomes toxic upon processing by a viral, e.g., HIV, protease.
  • a proprotein which becomes toxic upon processing by a viral, e.g., HIV, protease.
  • an engineered inactive proprotein form ofthe toxic ricin or diphtheria A chain can be cleaved to the active form by arranging for a virally encoded protease to recognize and cleave the "pro" element (see WO 95/14091).
  • nucleic acid molecules which express one or more gene products capable of activating an otherwise inactive precursor into an active inhibitor of a pathogenic agent, or a conditional toxic palliative, i.e., palliatives that are toxic for the cell expressing the pathogenic condition.
  • inactive precursors may be converted into active inhibitors of a pathogenic agent.
  • antiviral nucieoside analogs such as AZT or ddC are metabolized by cellular mechanisms to a nucleotide triphosphate form in order to specifically inhibit retroviral reverse transcriptase and thus inhibit viral replication (Furmam et al, Proc. Natl Acad. Sci. USA 53:8333-8337, 1986).
  • GDVs which comprise a nucleic acid molecule which encodes a substance (e.g., a protein) such as he ⁇ es simplex virus thymidine kinase (HSVTK), Varicella Zoster virus thymidine kinase (VZVTK), or other such "pro-drug activating enzymes" which selectively monophosphorylate certain purine arabinosides and substituted pyrimidine compounds (e.g., AZT or ddC), converting them to cytotoxic or cytostatic metabolites, are particularly useful.
  • a substance e.g., a protein
  • HSVTK simplex virus thymidine kinase
  • VZVTK Varicella Zoster virus thymidine kinase
  • pro-drug activating enzymes which selectively monophosphorylate certain purine arabinosides and substituted pyrimidine compounds (e.g., AZT or ddC), converting them to
  • GDVs may be utilized to express a pro ⁇ drug activating enzyme in a target cell which can be later destroyed by exposure to the appropriate "pro-drug", (e.g., gancyclovir, acyclovir, or any of their analogs (e.g., FIAU, FIAC, DHPG)) which is then phosphorylated into its corresponding active nucleotide triphosphate form.
  • a pro-drug e.g., gancyclovir, acyclovir, or any of their analogs (e.g., FIAU, FIAC, DHPG)
  • a nucleic acid molecule may code for a protein which performs phosphorylation, phosphoribosylation, ribosylation, or other metabolism of a purine- or pyrimidine-based drug.
  • Such nucleic acid molecules may have no equivalent in mammalian cells, and may be derived from organisms such as a virus, bacterium, fungus, or protozoan.
  • Representative examples include nucleic acid molecules which encode: E. coli guanine phosphoribosyl transferase ("gpt"), which converts thioxanthine into thioxanthine monophosphate (see Besnard et al, Mol Cell Biol.
  • alkaline phosphatase which converts inactive phosphorylated compounds such as mitomycin phosphate and doxorubicin-phosphate to toxic dephosphorylated compounds
  • fungal e.g., Fusarium oxysporum
  • bacterial cytosine deaminase which converts 5- fluorocytosine to 5-fluorouracil
  • carboxypeptidase G2 which cleaves glutamic acid from para-N-bis (2-chloroethyl) aminobenzoyl glutamic acid, to create a toxic benzoic acid mustard
  • Penicillin- V amidase which converts phenoxyacetamide derivatives of doxorubicin and melphalan to toxic compounds.
  • Conditionally lethal products have application to many presently known purine- or pyrimidine-based anticancer drugs, which often require intracellular ribosylation or phosphorylation to become effective cytotoxic agents.
  • the conditionally lethal gene product could also metabolize a nontoxic drug which is not a purine or pyrimidine analog to a cytotoxic form (see Searle et al., Brit. J. Cancer 53:377, 1986).
  • the nucleic acid molecule carried by the targeted GDV may direct the expression of one or more immunomodulatory factors.
  • An immunomodulatory factor is one which, when expressed by one or more ofthe cells involved in an immune response, or which, when added exogenously to the cells, causes an immune response to be different in quality or potency from that which would have occurred in the absence of the factor.
  • the immunomodulatory factor may also be expressed from an endogenous gene whose expression is driven or controlled by a gene product encoded by the nucleic acid molecule.
  • the quality or potency of a response may be measured by a variety of known assays, for example, in vitro assays which measure cellular proliferation (e.g., ⁇ H thymidine uptake), and in vitro cytotoxic assays (e.g., which measure 51 Cr release) (see, Warner et al, AIDS Res. and Human Retroviruses 7:645, 1991 ).
  • Immunomodulatory factors may be active both in vivo and ex vivo. Representative examples of such immunomodulatory factors include, for example, cytokines, such as IL-l, IL-2 (Karupiah et al, J. Immunology 144:290, 1990; Weber et al, J. Exp. Med.
  • immunomodulatory factor(s) include a-interferon, g-interferon, and IL-2 (see WO 94/21794).
  • Nucleic acid molecules that encode the above-described products, as well as other nucleic acid molecules that are advantageous for use within the present invention may be readily obtained from a variety of sources, including, for example, depositories such as the American Type Culture Collection, or from commercial sources such as British Bio- Technology Limited (Cowley, Oxford England). Alternatively, cDNA sequences for use with the present invention may be obtained from cells which express or contain the sequences, such as by RT PCR from isolated mRNA. Nucleic acid molecules suitable for use with the present invention may also be synthesized in whole or in part, for example, on an Applied Biosystems Inc. DNA synthesizer (e.g., ABl DNA synthesizer model 392 (Foster City, CA).
  • DNA synthesizer e.g., ABl DNA synthesizer model 392 (Foster City, CA).
  • a targeting element is a molecule that has affinity for a molecule present on the surface of a target cell.
  • targeting elements are considered to be "capable of interacting with a molecule present on the surface" of a selected cell type when a biological effect ofthe coupled targeting element may be seen in that cell type, or, when there is greater than at least about a 10-fold difference, and preferably greater than at least about a 25, 50, or 100-fold difference, between the binding ofthe targeting element to target cells and non-target cells.
  • the targeting element interact with a molecule present on the surface of the selected cell type with a KD of less than about 10" ⁇ M, preferably less than about 10 ⁇ 6M, more preferably less than about 10" ⁇ M, and most preferably less than about 10' ⁇ M (as determined by a Scatchard analysis, see Scatchard, Ann. N Y. Acad. Sci. 51:660, 1949).
  • Suitable targeting elements are preferably non-immunogenic, not degraded by proteolysis, and not scavenged by the immune system. Particularly preferred targeting elements should have a half-life within an animal of between about 10 minutes and about 1 week.
  • Suitable targeting elements include receptors, ligands, and antibodies (or antigen binding domains thereof).
  • Preferable receptor targeting elements include, for example, CD4 to target B-cells, CD8 to target T-cells, and CD21 to target B- cells.
  • Many other suitable receptors which can be used as targeting elements in accordance with the teachings provided herein are known in the art.
  • the targeting element is a ligand
  • it is preferably selected from a cytokine, lymphokine, polypeptide hormone, polypeptide or nonprotein molecule, for example, a carbohydrate.
  • Preferred cytokine ligands include IL-l type II to target myeloid cells or to target the interleukin- 1 receptor on T-cells (Fanslow et al, Science 245:739, 1990), IL2b to target B and T lymphocytes and monocytes, IL-3, SCF, or the flk-2 ligand to target hematopoietic cells, IL-6 to target activated B-cells, IL-7 to target lymphoid and myeloid cells, IL-8 to target T-cells and keratinocytes, and IL-10 to target mast cells.
  • Preferred lymphokine ligands include for example, GM-CSF to target granulocyte and monocyte lineage cells, G-CSF to target granulocyte lineage cells
  • Preferred polypeptide hormones include for example, follicle stimulating hormone (FSH) to target ovaries and testes, human growth hormone (HGH) to target osteocytes and myocytes, lutenizing hormone to target ovaries and testes, melanocyte stimulating hormone to target melanocytes, erythropoietin to target bone marrow cells, nerve growth factor to target nerve growth factor receptors on neural tumors (Chao et al, Science 232:518, 1986), vasoendothelial growth factor (VEGF) to target cells where increased vascularization occurs, and epidermal growth factor to target epidermal cells.
  • FSH follicle stimulating hormone
  • HGH human growth hormone
  • lutenizing hormone to target ovaries and testes
  • melanocyte stimulating hormone to target melanocytes
  • erythropoietin to target bone marrow cells
  • nerve growth factor to target nerve growth factor receptors on neural tumors
  • VEGF vasoendotheli
  • Preferred polypeptides include, for example, fimbriae to target CEA receptors on cancer cells, neuromedin (Conlon, J. Neurochem. 57:988, 1988) to target the cells ofthe uterus for contractile activity, insulin to target insulin receptors on cells for glucose regulation, the Fc receptor to target macrophages (Anderson and Looney, Immun. Today 7:264, 1987), transferrin to target transferrin receptors on tumor cells (Huebers et al, Physio. Rev.
  • asialoglycoprotein to target hepatocytes urokinase plasminogen activator (UP A) to target endothelial cells, lectins to target specific glycoproteins or glycolipids on the surface of target cells (Sharon and Lis, Science 246:227, 1989), collagen type I to target colon cancer (Pullam and Bodmer, Nature 356:529, 1992) and acetylated low density lipoproteins ("LDL”) to target macrophage scavenger receptors and atherosclerotic plaques (see Brown et al. , Ann. Rev.
  • LDL acetylated low density lipoproteins
  • a polypeptide targeting element which has affinity for a receptor on the target cell may be selected from libraries created utilizing recombinant techniques (see Scott and Smith, Science 249:386, 1990; Devlin et al, Science 249:404, 1990; Houghten et al, Nature 354:84 1991 ; Matthews and Wells, Science 260: ⁇ 1 13,1993 and Nissim et al, EMBO J. 73(3):692, 1994).
  • Preferred nonprotein molecules include for example, targeting elements selected from existing or created organic compound libraries. As stated above the targeting element may also be an antibody directed against a surface molecule ofthe target cell.
  • Preferred antibodies include 12.8 (Andrews et al, Blood 67:842, 1986), and MylO (Civin et ⁇ /., J. Immunol 733:157, 1984; commercially available from Becton Dickinson under the designation HPCA-2) to target the anti-CD34 antigen on stem cells, anti-CD4 antibody to target CD4+ T-cells, anti-CD8 antibodies to target CD8+ cells, the HER2/neu monoclonal antibody 4D5 (Sarup et al.
  • antibodies are preferably humanized. Techniques for the production of antibodies useful in the practice of this invention are known in the art.
  • targeting elements may be utilized that are capable of interacting with a molecule present on the surface of a selected cell type or when there is a greater than at least about 10-fold difference between the binding ofthe targeting element to the target cells and non-target cells.
  • Multifunctional linking agents are molecules that contain at least two reactive groups separated by a spacer or "bridge.”
  • multifunctional linking agents are used to covalently bind a targeting element to a GDV.
  • the spacer provides the spatial distance necessary to accommodate steric considerations ofthe moieties to be linked.
  • Different linking agents may be selected based on the lengths of bridges desired for the coupling.
  • a linking agent with a short spacer (4-8 A) is used and the degree of linking between the GDV and the targeting element is determined. If linking is minimal or unsuccessful, a multifunctional linking agent with a longer spacer is then selected. This process may be repeated in an iterative pattern until a linking agent providing the spacing is identified.
  • a bifunctional linking agent that has identical reactive groups on either end ofthe bridge is said to be homobifunctional. Where the reactive groups are different, the bifunctional linking agent is referred to as a heterobifunctional.
  • reactive groups include imidoesters, N-hydroxysuccinimidyl (NHS) esters, maleimides, pyridyl disulfides, carbodiimides, and arylazides, as well as others known in the art.
  • the imidoesters and the NHS esters react with primary amines present on the GDV and targeting element, while maleimide and pyridyl disulfide react with sulfhydryl groups present on the GDV and targeting element.
  • Carbodiimides couple carboxyl groups to primary amines present on the GDV and the targeting element.
  • An arylazide is a photoactivatable group that forms reactive nitrene when exposed to ultraviolet or visible light at wavelengths ranging from 250-460 nm. The aryl nitrene thus formed reacts nonselectively to form a covalent bond.
  • the targeting element is covalently bound to the GDV utilizing "multifunctional linking agents", preferably bifunctional linking agents (e.g., homobifunctional or heterobifunctional linking agents).
  • multifunctional linking agents e.g., homobifunctional or heterobifunctional linking agents.
  • a variety of multifunctional linking agents may be utilized and are available through Pierce (Rockford, IL).
  • Multifunctional linking agents include 4(4-N-maleimidophenyl)butyric acid hydride » HCl'l/2 dioxane (MPBH; a heterobifunctional non-cleavable linking agent), succinimidyl 4-(N-maleimidomethyl)cyclohexane-l -carboxylate (SMCC; a heterobifunctional linker), sulfosuccinimidyl (4(azidosalicylamido)hexanoate (sulfo-NHS- LC-ASA; a photoactivatable linking agent), sulfosuccinimidyl-2-[6-(biotinamido)-2-(p- azidobenzamido)-hexanoamido]ethyl-l,3'-dithiopropionate (Sulfo-SBED; a trifunctional linking agent having biotin covalently attached to a heterobifunctional reagent comprising a hydroxy
  • Multifunctional linking agents include, for example, N-succinimidyl-3- (2-pyridyl dithio) propionate (“SPDP”; Carlson et al, J. Biochem. 773:723, 1978), Sulfosuccinimidyl 4-N-maleimidomethyl) cyclohexane- 1 -carboxylate (“SulfoSMCC”), 1- ethyl-3 (3-dimethylaminopropyl) carbodiimide (“EDC”), and Bis-diazobenzidine (“BDB”).
  • SPDP N-succinimidyl-3- (2-pyridyl dithio) propionate
  • SulfoSMCC Sulfosuccinimidyl 4-N-maleimidomethyl) cyclohexane- 1 -carboxylate
  • EDC 1- ethyl-3 (3-dimethylaminopropyl) carbodiimide
  • BDB Bis-diazobenz
  • the multifunctional linking agent further comprises a monosaccharide, disaccharide or an oligosaccharide wherein the carbohydrate is first covalently bound to a targeting element utilizing the linking agents described above.
  • the modified targeting element is then covalently bound to a GDV via the carbohydrate moiety.
  • a targeting element is bound to a aminated carbohydrate utilizing a multifunctional linking agent.
  • a homobifunctional linker such as DSS may be utilized to covalently bind the targeting element to the carbohydrate via amine groups present on the targeting element and the aminated carbohydrate.
  • a heterobifunctional linker such as SMCC can be used to bind the carbohydrate to a sulfhydryl present on the targeting element to the amine group ofthe aminated carbohydrate.
  • the modified targeting element may then be bound to the GDV. Briefly, the GDV and the modified targeting element are mixed at various pHs ranging from about 7.4 to about 8.4 and incubated, preferably overnight at about 4°C. Following incubation, the mixture is treated with sodium cyanoborohydride. The reaction mixture is dialyzed at low temperature (about 2°C to 10°C) for a sufficient time (about 1 to 48 hours) to remove cyanoborohydride and sterilized by passage through an appropriate filter. Alternative procedures may be employed, depending on the carbohydrate and linker employed, as those in the art will appreciate.
  • GDV GDV Production
  • the GDV Once the GDV has been designed, it must be produced in an amount sufficient for conjugation to a desired targeting element and for administration to an animal.
  • the GDV is a recombinant viral vector, it may be produced utilizing a packaging system.
  • a variety of viral vector packaging systems are described below in which one or more essential functions ofthe parent virus has been deleted so that it is deficient in some function (e.g., genome replication), but retains a packaging signal and the ability to express gene products from one or more nucleic acid molecules.
  • Representative examples of viral vector packaging systems include those for retroviral vectors, alphaviral vectors and adenoviral vectors.
  • the deleted essential function or functions are provided by packaging cells into which the vector genome can be introduced to yield producer cell lines that then make viral particles encapsidating the recombinant viral vector.
  • such producer cell lines produce viral vectors substantially free from contamination with replication competent virus.
  • the vector genome is then introduced into target cells by an infection event ("transduction") but is incapable of further propagation. In any such situation, it is important to prevent the recombination ofthe various parts of the virus in a producer cell line to give replication competent virus genomes, or to eliminate cells in which this occurs.
  • the expression vector may be readily assembled from any virus utilizing standard recombinant techniques (e.g., Sambrook et. al, Molecular Cloning: A Laboratory Manual, 2d ed. Cold Spring Harbor Laboratory Press, 1989). Further description ofthe construction of retroviral vectors is described in WO 89/09271, herein inco ⁇ orated by reference.
  • the GDVs are retroviral vectors.
  • such vectors comprise a 5' LTR, a tRNA binding site, a packaging signal, one or more genes of interest, an origin of second strand DNA synthesis, and a 3' LTR, wherein the vector lacks gag/pol or env coding sequences.
  • a 5' LTR should be understood to include a 5' promoter element and sufficient LTR sequence to allow reverse transcription and integration ofthe DNA form ofthe vector.
  • the 3' LTR includes a polyadenylation signal and sufficient LTR sequence to allow reverse transcription and integration ofthe DNA form of the vector.
  • packaging cell lines for producing viral particles wherein at least the codons of 5' terminal end ofthe gag/pol gene are modified to take advantage ofthe degenerate nature ofthe genetic code to minimize the possibility of homologous recombination between the vector and sequences in the packaging cell coding for the viral structural proteins. Additional techniques for reducing the possibility of recombination events between vectors present in a packaging cell and the recombinant retroviral genome to be packaged are provided in WO 92/05266, WO 91/02805 and WO 96/20414.
  • Packaging cell lines suitable for use with the above described recombinant retroviral vectors may be readily prepared using techniques known in the art, and utilized to create producer cell lines for the production of recombinant vector particles.
  • alphavirus packaging cell lines are provided.
  • alphavirus packaging cell lines are provided wherein the viral structural proteins, supplied in trans from one or more stably integrated expression vectors, are able to encapsidate transfected, transduced, or intracellularly produced vector RNA transcripts in the cytoplasm and release infectious, packaged vector particles through the cell membrane, thus creating an alphavirus vector producing cell line.
  • Alphavirus RNA vector molecules capable of replicating in the cytoplasm ofthe packaging cell, can be produced initially utilizing, for example, an SP6 or T7 RNA polymerase system to transcribe in vitro a cDNA vector clone encoding the recombinant alphaviral genome which comprises the gene(s) of interest and the alphavirus non-structural proteins.
  • Vector RNA transcripts are then transfected into the alphavirus packaging cell line such that the vector RNA replicates to high levels and is subsequently packaged by viral structural proteins, yielding infectious vector particles.
  • Packaging cell lines suitable for use with the above described alphaviral vector constructs may be readily prepared (see WO 95/07994).
  • adenovirus packaging cell lines are provided.
  • Adenovirus vectors are derived from nuclear replicating viruses and may be constructed such that they are replication defective.
  • One or more nucleic acid molecules may be carried by adenoviral vectors for delivery to target cells (see Ballay et al. , EMBO J. 4:3861, 1985, Thummel et al, J. Mol. App Genetics 7:435, 1982 and WO 92/05266).
  • a targeted gene delivery vehicle may include one or more fusigenic proteins to assist in gene delivery.
  • Representative fusagenic proteins include ecotropic murine retrovirus envelope proteins, other retrovirus envelope proteins modified to disable normal receptor recognition, fusagenic proteins from he ⁇ es simplex virus fusagenic proteins gH and gL, Epstein-Barr virus fusagenic proteins, measles virus fusagenic proteins, malarial sporozoite fusagenic proteins, and other proteins known in the art to have fusogenic properties.
  • compositions comprising targeted GDVs are preferably purified again prior to administration.
  • the techniques utilized for purification is dependent on the type of GDV to be purified. For example, there are a variety of techniques known in the art which may be used if the GDV is an enveloped recombinant viral vector, a nucleic acid or a liposome. A preferred method is described in co-owned U.S. Patent No. 5,447,859, issued September 5, 1995.
  • the GDVs are typically purified to a level ranging from 0.25% to 25%, and preferably about 5% to 20% before conjugation.
  • the GDV is a nucleic acid
  • there are a variety of techniques known in the art including, for example, purification by CsCl-ethidium bromide gradient, ion- exchange chromatography, gel-filtration chromatography, and differential precipitation with polyethylene glycol. Further description ofthe purification of nucleic acids is provided in Sambrook et. al, Molecular Cloning: A Laboratory Manual, 2d ed. (Cold Spring Harbor Laboratory Press, 1989).
  • preparation of liposomes typically involves admixing solutions of one or more purified phospholipids and cholesterol in organic solvents and evaporating the solvents to dryness. An aqueous buffer containing the GDVs is then added to the lipid film and the mixture is sonicated to create a fairly uniform dispersion of liposomes. In certain embodiments, dialysis, gel filtration, or ultracentrifugation is then be used to separate uninco ⁇ orated components from the intact liposomes.
  • linking agents may be utilized to bind target elements to GDV.
  • the methods used vary depending on the available functional groups on the exterior ofthe GDV and the targeting element.
  • a multifunctional linking agent such as disuccinimidyl suberate (DSS, Pierce, Rockford, IL) which is a homobifunctional N- hydroxysuccinimdyl ester linking agent.
  • DSS disuccinimidyl suberate
  • IL a homobifunctional N- hydroxysuccinimdyl ester linking agent
  • the GDV contains sulfhydryl functional groups on its surface and the targeting element has a primary amine available a heterobifunctional linking agent may be utilized for example succinimidyl 4-(N- maleimidomethyl)cyclohexane-l -carboxylate.
  • GDV contains a carboxyl functional group and the targeting element has a sulfhydryl functional group then a heterobifunctional group such as 4(4-N-maleimidophenyI)butyric acid hydride*HCM/2 dioxane may be utilized.
  • Other linking agents may be utilized include trifunctional linking agents which permit binding of a targeting element, a GDV and a third element and light activated linking agents see Example 4 below.
  • GDV can be bound to targeting elements by a variety of other methods.
  • GDV/targeting element similar to a cesium chloride gradient (see Sambrook et al, supra).
  • the preparation is preferably formulated into a pharmaceutical composition containing some or all ofthe following: one or more pharmaceutically acceptable carriers and/or diluents; a saccharide; a high molecular weight structural additive; a buffering component; water; and one or more amino acids.
  • a pharmaceutically acceptable carriers or diluents are non-toxic to recipients at the dosages and concentrations employed.
  • carriers or diluents for injectable solutions include for example water, isotonic saline solutions (i.e., phosphate- buffered saline or Tris-buffered saline, preferably buffered at physiological pH), mannitol, dextrose, glycerol, and ethanol, as well as polypeptides or proteins such as human serum albumin.
  • the saccharide provides, among other things, support in the lyophilized or dried state.
  • the preferred saccharide is lactose
  • other saccharides may be used, such as sucrose, mannitol, glucose, trehalose, inositol, fructose, maltose or galactose.
  • combinations of saccharides can be used, for example, lactose and mannitol, or sucrose and mannitol.
  • a particularly preferred concentration of lactose is 3% to 4% by weight.
  • the concentration ofthe saccharide ranges from 1% to 12% by weight.
  • a preferred composition comprises 10 mg/mL mannitol, 1 mg/mL HSA, 20 mM Tris, pH 7.2, and 150 mM NaCl being particularly preferred (see WO 95/10601). Such compositions are stable at -70°C for at least six months.
  • compositions ofthe invention may also additionally include factors to stimulate cell division, and hence, uptake and inco ⁇ oration ofthe administered
  • GDVs include melanocyte stimulating hormone (MSH) for melanoma, epidermal growth factor (EGF) for breast or other epithelial carcinomas, and the anesthetic bipuvocaine (or related compounds) for intramuscular injection.
  • MSH melanocyte stimulating hormone
  • EGF epidermal growth factor
  • bipuvocaine bipuvocaine
  • differentially targeting GDVs i.e., GDVs targeted to different tissues, or the same tissue by way of a different interaction
  • GDVs targeted to different tissues may be provided in a single composition or each targeted GDV may be administered separately to an animal.
  • compositions containing multiple targeted GDVs are typically administered in the same composition, but may be simultaneously administered at the same time and same site, such as via the use of a double barreled syringe or by joint formulation.
  • a composition containing one or more different targeted GDVs may also be administered at different sites, as disclosed in WO 96/20731.
  • compositions according to the invention may be provided either as a liquid solution, or as a solid form (e.g., lyophilized or dehydrated) which can be resuspended in a solution prior to administration.
  • lyophilization involves the steps of cooling the aqueous suspension below the glass transition temperature or below the eutectic point temperature ofthe aqueous suspension, and removing water from the cooled suspension by sublimation. See Phillips et al, Cryobiology 75:414, 1981 and WO 95/10601.
  • the resulting composition preferably contains less than 10% water by weight.
  • the composition is stable and may be stored at or above -70°C preferably at - 20°C to -25°C.
  • water is removed from the aqueous suspension at ambient temperature by evaporation.
  • water may be removed through spray drying (see EPO 520,748).
  • Spray drying apparatus are available from a number of manufacturers (e.g., Drytec, Ltd., Tonbridge, England; Lab-Plant, Ltd., Huddersield, England).
  • the targeted GDV composition is stable and may be stored at or above -70°C preferably at -20 C to -25 C.
  • the recombinant virus will constitute about 10 ng to 1 mg of material per dose, with about 10 times this amount of material present as copurified contaminants.
  • the composition is administered in doses of about 0.1 to 1.0 mL of aqueous solution, which may or may not contain one or more additional pharmaceutically acceptable excipients, stabilizers, or diluents.
  • compositions are typically administered in vivo via traditional direct routes, such as buccal/sublingual, rectal, oral, nasal, topical, (such as transdermal and ophthalmic), vaginal, pulmonary, intraarterial, intramuscular, intraperitoneal, subcutaneous, intraocular, intranasal, intravenous routes or directly into a specific tissue, such as the liver, bone marrow, or into the tumor in the case of cancer therapy.
  • direct routes such as buccal/sublingual, rectal, oral, nasal, topical, (such as transdermal and ophthalmic), vaginal, pulmonary, intraarterial, intramuscular, intraperitoneal, subcutaneous, intraocular, intranasal, intravenous routes or directly into a specific tissue, such as the liver, bone marrow, or into the tumor in the case of cancer therapy.
  • the composition is administered to an animal via the desired route and then the animal is tested for the desired biological response.
  • testing may include immunological screening assays e.g., CTL assays, antibody assays.
  • the test(s) performed will depend on the product produced by the nucleic acid molecule introduced by the targeted GDV and the disease to be treated or prevented.
  • the titers ofthe targeted GDVs to be administered may be adjusted to further enhance the desired effect(s).
  • the following examples are offered by way of illustration and not by way of limitation.
  • Linking agents are utilized to link GDVs to the selected targeting elements. These linking agents contain at least two reactive groups which, upon activation in the presence of GDV and the targeting element, form covalent bonds thereby coupling the GDV and targeting element. When the reactive groups are identical, the linking agent is said to be homobifunctional. If the reactive groups are different, the linking agent is referred to as a heterobifunctional. Examples of reactive groups include imidoesters, N- hydroxysuccinimidyl (NHS) esters, maleimides, pyridyl disulfides, carbodiimides, and arylazides.
  • reactive groups include imidoesters, N- hydroxysuccinimidyl (NHS) esters, maleimides, pyridyl disulfides, carbodiimides, and arylazides.
  • the imidoesters and the NHS esters react with primary amines present on GDVs and targeting elements while the maleimide and pyridyl dissulfide react with sulfhydryl groups present on GDVs and targeting elements.
  • Carbodiimides couple carboxyl groups to primary amines present on the GDV and the targeting elements.
  • a photoactivatable arylazide is a group that is photolyzed when exposed to ultraviolet or visible light at wavelengths ranging from 250-460 nm to form a reactive nitrene. The aryl nitrene thus formed non-selectively forms a covalent bond.
  • the linking agent may further comprise a monosaccharide, disaccharide or an oligosaccharide, wherein the carbohydrate is covalently bound to a targeting element utilizing the linking agents described above and then the modified targeting element is covalently bound to a GDV via the carbohydrate.
  • HCM/2 dioxane 4(4-N-maleimidophenyl)butyric acid hydride » HCM/2 dioxane (MPBH, Pierce, Rockford, IL) is a heterobifunctional non-cleavable linking agent containing a hydrazide group and maleimide that react with carbohydrates and sulfhydryls, respectively.
  • This protocol provides for the conjugation of glycoproteins present on the surface of a recombinant virus, a polycation, a liposome, bacteriophage or bacterium to thiol-containing proteins of a targeting element.
  • the recombinant virus is first conjugated to MPBH followed by conjugating to the sulfhydryl-containing targeting element.
  • reaction mixture is brought back to its original volume with 0.1 M sodium acetate buffer, pH 5.5, and the centrifugation procedure is repeated two additional times.
  • a 10 mg/mL solution of MPBH is added to the oxidized recombinant virus to a final concentration of 1 mM MPBH and allowed to react with agitation for 2.0 hours at room temperature.
  • the excess MPBH is removed by centrifugation at 1000 x g for 15 to 30 minutes using a microconcentrator.
  • the sample is then brought back to its original volume in 0.1 M sodium phosphate, 50 mM NaCl, pH 7.0. This centrifugation process is repeated twice.
  • the targeting element 5 mg/mL ofthe targeting element in 0.1 M sodium phosphate, 50 mM NaCl, pH 7.0 buffer
  • This reaction mixture is incubated for 2.0 hours at room temperature.
  • the targeting element-conjugated recombinant virus may then be purified by column chromatography.
  • Succinimidyl 4-(N-maleimidomethylteyclohexane-l -carboxylate (Pierce, Rockford, IL) linking agent consists of an N-hydroxysuccinimide (NHS)-ester and a maleimide group connected with a spacer.
  • NHS ester reacts with a primary amine at pH 7 to 9 and the maleimide reacts with sulfhydryl groups at pH 6.5 to 7.5.
  • This protocol provides for the conjugation of a recombinant virus, a polycation, a liposome, bacteriophage or bacterium to a targeting element via sulfhydryls present in the viral coat proteins ofthe recombinant virus to the primary amines present on the targeting element.
  • a GDV solution is prepared to an equivalent protein concentration of 4.0 mg/mL in a phosphate buffered saline (PBS) solution containing EDTA to a final concentration of 5 mM.
  • PBS phosphate buffered saline
  • a reducing agent is added to this solution containing 0.5 M b-2-mercaptoethanolamine in PBS with 5.0 mM EDTA and the reaction mixture is incubated for 90 minutes at 37°C. Following incubation the modified GDV may be desalted by column chromatography.
  • the maleimide activated-targeting element may be desalted by column chromatography.
  • the reduced GDV is mixed with the maleimide activated-targeting element and incubated at 4°C overnight.
  • the targeting element conjugated GDV may be desalted by column chromatography.
  • the reaction mixture is incubated for 15 minutes at 37°C and then irradiated with long wave UV light for 10 minutes at room temperature. This mixture is then flashed with a bright light for 1 to 3 seconds (three camera flashes).
  • the photoactivated targeting element conjugated GDV may be desalted by column chromatography.
  • Sulfosuccinimidyl-2-[6-(biotinamido)-2-(p-azidobenzamido)-hexanoamido]ethyl- 1 ,3'-dithiopropionate is a trifunctional crosslinking reagent having biotin covalently attached to a heterobifunctional reagent comprising a hydroxysuccinimido active ester and a photoreactive aryl azide. Approximately 1.12 mg of Sulfo-SBED is dissolved in 25 ⁇ L DMSO.
  • the Sulfo-SBED is then added to a solution of targeting element containing 5 mg ofthe targeting element in 0.5 mL of 0.1 M PBS, pH 7.2. This mixture is incubated at room temperature for 30 minutes.
  • the linking agent-targeting element conjugate may be desalted by column chromatography.
  • the linking agent-targeting element conjugate is then mixed with the GDV solution having an equivalent protein concentration of 5.0 mg dissolved in 0.5 mL PBS and incubated at room temperature for 3.5 minutes. This reaction mixture is irradiated with long wave UV light for 15 minutes.
  • the targeting element-GDV conjugate may be desalted by column chromatography. Since the linking agent is biotinylated a second molecule conjugated to avidin may be bound to this targeting element-GDV conjugate.
  • Disuccinimidyl suberate (DSS, Pierce, Rockford, IL) is a homobifunctional N- hydroxysuccinimdyl ester linking agent.
  • This protocol provides for the conjugation ofa GDV to a targeting element via primary amines present on the proteins ofthe GDV and the targeting element.
  • a protein concentration equivalent of 0.1 to 0.5 mg ofthe GDV in PBS is incubated with the targeting element having a concentration of 5 to 10 nM in PBS in a total volume of 100 ⁇ L for 1.0 hour at 4°C.
  • DSS solution DSS dissolved in dry DMSO to a 10-25 mM concentration
  • a stop solution 1.0 M Tris, pH 7.5
  • the targeting element-GDV may be desalted by column chromatography.
  • the MSH-glucose conjugate is added to a cold solution of sodium wet ⁇ -periodate containing 100 mM sodium periodate in 0.1 M sodium acetate buffer, pH 5.5.
  • the oxidation reaction is allowed to proceed for 1.0 hour in the dark at room temperature.
  • Glycerol is added and the mixture is dialyzed at 4°C overnight and then concentrated.
  • a liposomal suspension (1.5 ⁇ mole) is mixed with l-ethyl-3-(3- dimethylaminopropyl)-carbodiimide (EDC; 4 mg, Pierce Chemical Co., Rockford, IL) in 1.5 mL of 10 mM NaPO4, 0.15 M NaCl, pH 5.0. The reaction is carried out at room temperature for one hour.
  • EDC l-ethyl-3-(3- dimethylaminopropyl)-carbodiimide
  • the liposome/EDC mixture (1.5 mL) is mixed with 75 ⁇ L of mouse IgG (Cappel
  • the amount of protein bound to the liposome is determined by the Lowry protein assay.
  • the concentration of lipid is determined from I '25 radioactivity levels, based on a known amount of PE-I ⁇ 5 included in the liposome preparations. Based on the measured protein and lipid concentrations, the protein to lipid coupling ratios, expressed in micrograms protein/ ⁇ mole, lipid concentrations are determined.
  • HepG2 Human hepatoma cell lines HepG2 (Schwartz, et al , J. Biol. Chem. 256:8878, 1981 ) and SK Hep 1, and rat hepatoma cell line Morris 7777 (ATCC CRL 1601, Wu et. al, J. Biol. Chem. 263:4719, 1988) and murine fibroblast cell line NIH3T3 (ATCC CRL 1658,
  • Goud et al, Vir. 763:251, 1988) are plated at a density of 0.5 to 2.0 x 10 5 cells/mL in 60 mm plastic dishes (Falcon Scientific Co., Lincoln Park, NJ).
  • Equal amounts (16.7 ⁇ g of RNA, 0.5 mg of viral protein) of modified and unmodified GDV in Dulbecco's modified Eagle's medium are added to the culture medium and exposed to cells for 5 days at 37°C under 5% CO2- Cells are assayed for b-galactosidase activity as a measure of foreign gene expression according to the method of Gorman (DNA Cloning 2:157-158, 1986, Glover, D.M., ed., IRL Press, Washington, DC).
  • cell monolayers (approximately 1.0 x 10 ⁇ cells/60 mm dish) are washed with phosphate-buffered saline, then lysed.
  • the lysate 0.1 mL, is reacted with o-nitrophenyl galactopyranoside (Sigma, St. Louis, MO) and b- galactosidase activity quantitated by absorbance at 420 nm after the addition of Na2CO3 to terminate the reaction.
  • phosphate-buffered saline then incubated with 1.0 mM MgCl2 phosphate-buffered saline, and overlaid with 1.0 mg/mL X-gal (GIBCO, Bethesda Research Laboratories, MD), 5 mM potassium ferricyanide, 5 mM potassium ferrocyanide, and 2 mM MgCl2 in phosphate-buffered saline. After incubation at 37°C for 1 hour, the dishes are washed in phosphate-buffered saline to quench the reaction and evaluated by counting positive (blue) cells under a light microscope, and the results are expressed as the percent of positive 10 high power fields.
  • the cells may be incubated at 37°C in serum-free Dulbecco's modified Eagle's medium containing 3 s-biolabeled, modified GDV, 3.3 ⁇ g of viral RNA (98 ⁇ g of viral protein) (Watanabe, et al, Cancer Immunol. Immunother. 25:157, 1989) with a specific activity of 6.1 x 10 ⁇ cpm/mg of nucleic acid.
  • medium is removed, and cells are chilled to 4°C and washed with ice-cold minimum essential medium containing 1.0 mg/mL bovine serum albumin.
  • Radioactivity is stripped with 0.5 mL of cold phosphate-buffered saline, pH 7.2, containing 0.4% trypsin, 0.02% EDTA, and separated from cells by centrifugation.
  • the cell pellet is solubilized in 0.2 N NaOH and Poly-Fluor (Packard Instrument Co.), and trypsin-EDTA-resistant (internalized) radioactivity is measured by scintillation counting (Tr-Carb 4530, Packard) (Schwartz, et al, J. Biol. Chem. 256:8878, 1981).
  • Nonspecific uptake is measured in the presence of a 100-fold molar excess of targeting element, and specific uptake is calculated as the difference between total and nonspecific measurements.
  • samples of freshly prepared sterile, GDV conjugated to the desired targeting element are incubated in serum-free Dulbecco's modified Eagle's medium at 4 and 25°C. At various times, samples are added to the medium of target cells and incubated for 5 days. Cells are then assayed for b-galactosidase activity by colorimetric assay as described above.
  • Core antigen and precore antigen in cell lysates and secreted e antigen in culture supernatant are assayed using the Abbott HBe, rDNA EIA kit (Abbott Laboratories Diagnostic Division, Chicago, IL).
  • Another sensitive EIA assay for precore antigen in cell lysates and secreted e antigen in culture supernatant is performed using the Incstar ETI-EB kit, (Incstar Co ⁇ oration, Stillwater, MN).
  • a standard curve is generated from dilutions of recombinant hepatitis B core and e antigen obtained from Biogen (Geneva, Switzerland).
  • HBV e antigen approximately 20-40 ng/ml HBV e antigen is expressed in transduced cell lines, and 38-750 ng/ml of HBV core antigen is expressed in transduced cell lines.
  • protein expression may be determined by Western blot or by Immunoprecipitation Western blot. See U.S.S.N. 08/483,51 1, filed June 7, 1995.
  • expression may be assayed by exposing the sample to luciferin and measuring the resulting luminescence. Briefly, transfected cells are harvested, washed in PBS and resuspended in 200 mL of 0.25 M Tris- HCl, pH 7.8. The cells are lysed by three cycles of freeze/thawing and the cellular debris is removed by centrifugation.
  • luciferase activity Approximately 50 mL of cell lysate is assayed for luciferase activity by measuring light emission with a bioluminometer (Analytical Bioluminescence, San Diego, CA) in the presence of luciferin and ATP (Brasier et al, Biotechniques 7:11 16, 1989). The amount of protein in the lysate is determined by the Bradford dye-binding procedure (Bio-Rad, Hercules, CA).
  • Targeted GDV preparations made in accordance with the teachings provided herein are injected into an animal at doses of 10 5 , IO 6 , IO 7 , 10 8 , IO 9 , IO 10 , or 10 1 ] GDVs with or without uptake enhancers such as polybrene (1-8 ⁇ g/mL) or DEAE dextran (2 - 30 ⁇ g/mL).
  • uptake enhancers such as polybrene (1-8 ⁇ g/mL) or DEAE dextran (2 - 30 ⁇ g/mL).
  • Injections are given daily for 1, 2, 3, 4, 5, 6, or 7 days, and 2 to 7 days after the last injection, to determine the activity ofthe delivered gene. Injections are typically administered through an I.V.
  • Patients preferably receive doses of about 10 6 , IO 7 , IO 8 , IO 9 , 10 10 , or 10* l targeted GDVs I.V., intra-arterially, in the local vasculature or peritumorally, as the case may be, in a volume of 0.1 to 3 mL.
  • the gene is one that encodes a protein which converts a non-toxic precursor (prodrug) into a toxic product
  • the prodrug is administered at doses defined in the Physicians Desk Reference or those predicted from animal experiments at times of between 1 to 30 days after the last administration of the targeted GDV.
  • the targeted GDV is typically administered from 1 to 20 times al intervals of 1 to 15 days and the patient status is monitored by following normal clinical parameters and monitoring tumor sizes by radiography, MRl scans, PET scans or other conventional means.

Abstract

The invention described herein relates to compositions and methods for targeting gene delivery vehicles. Specifically, the invention relates to utilizing multifunctional linking agents, e.g., homobifunctional, heterobifunctional, and trifunctional linking agents, to covalently bind targeting elements to the exterior of gene delivery vehicles. Following administration of such targeted gene delivery vehicles to an animal, the targeted elements interact with a specific molecule on the surface of the target cells, after which the desired nucleic acid molecule is introduced into the target cell and expressed. The described targeting mechanism allows gene delivery vehicles to be delivered to specific target cell or tissue types with greater specificity than occurs when the gene delivery vehicle administered lacks such a covalently bound targeting element.

Description

COMPOSITIONS AND METHODS FOR TARGETING GENE
DELIVERY VEHICLES USING COVALENTLY BOUND
TARGETING ELEMENTS
Technical Field
The present invention relates generally to compositions and methods for targeting gene delivery vehicles to one or more specific cell or tissue types. Specifically, the invention concerns compositions and methods which utilize targeting elements covalently bound to the surface of a gene delivery vehicle via a multifunctional linking agent.
Background ofthe Invention
Although many bacterial diseases can generally be treated effectively with antibiotics, very few effective treatments or prophylactic measures presently exist for many viral, cancerous, and other nonbacterial diseases, such as genetic diseases. Traditional attempts to treat these diseases have employed the use of chemical drugs. However, such drugs often lack specificity and exhibit high overall toxicity. Consequently, various methods have been developed to treat and/or prevent viral, cancerous, and genetic diseases that previously had not been amenable to traditional therapies as well as more recent therapies such as gene therapy. For example, recombinant retroviruses which can replicate and integrate into a host cell's genome through a DNA intermediate, have been utilized to deliver one or more foreign genes into a target cell in order to evoke a therapeutic benefit. A recombinant retroviral vector expressing HIV gp 160/120 envelope proteins was shown to elicit a cytotoxic T-cell response against cells infected with HIV in Warner et al , (AIDS Res. Hum. Retro. 7:645, 1991). In Miller et al, (Science 225:630, 1984) and Gruber et al , (Science 230: 1057, 1985) a recombinant retroviral vector expressing the hypoxanthine phosphorelase transferase (HPRT) gene was transduced into bone marrow cells and shown to produce adequate levels of HPRT to correct the metabolic defect, known as Lesch-Nyhan syndrome, in culture. However, one difficulty with recombinant retroviruses and other gene delivery vehicles is that they are difficult to target to a selected cell type or tissue where it is desired to affect treatment.
A number of methods have been devised to target viral vectors, such as retroviral vectors, to specific cell or tissue types. For example, Neda et l. (J. Biol. Chem. 2(56: 14143, 1991) chemically coupled lactose to viral particles in order to produce viral particles capable of targeting human hepatocytes in vitro. However, this method is of limited applicability and has only been shown to allow the targeting of hepatocytes in tissue culture.
Others have attempted to link antibodies (Goud, et al, Vir. 163:251, 1988) or antibody fragments (Roux et al , PNAS 86:9070, 1989; Etienne-Julan et al , J. of Gen. Vir. 73:3251 , 1992) to a viral particle in order to target the viral particle to a specific cell type. However, while such methods produced binding ofthe virus to a specific cell type, it did not result in the establishment of a proviral state (Goud, et al, supra) or resulted in only low levels of transduction (Roux, et al, supra and Etienne, et al, supra). Moreover, none of these references described the use of such compositions to target cells in vivo.
Other attempts have been made to specifically target a cell type by selecting a virus which normally infects that cell type. For example, Shimada et al (J. Clin. Invest. 55: 1043, 1991) developed an HIV gene transfer system to specifically target CD4+ T-cells. However, that system produced infectious helper virus (HIV in the above example), making it unsuitable for human use. Others have co-expressed the CD4 protein in-frame with the avian leukosis virus transmembrane protein or with the transmembrane protein of murine leukemia virus in an attempt to target HIV infected T-cells (Young, et al, Science 250:1421, 1990). Although the CD4 protein was presented on the surface of the virus, transduction of target T-cells was not shown. The present invention overcomes previous difficulties of delivering and specifically targeting gene delivery vehicles, and further provides other related advantages.
Summary ofthe Invention
The present invention provides compositions and methods for targeting gene delivery vehicles to one or more specific cell or tissue types. It is the object ofthe present invention to provide a gene delivery vehicle to which a targeting element is covalently bound by a linking agent such that the targeting element is capable of interacting with a molecule present on the surface of a target cell. Within one aspect, the targeting element is covalently bound to the surface ofthe gene delivery vehicle by a multifunctional linking agent. In certain embodiments, the multifunctional linking agent is selected from the group consisting of a homobifunctional linking agent, a heterobifunctional linking agent and a trifunctional linking agent. In preferred embodiments, the multifunctional linking agent may be selected from the group consisting of 4(4-N-maleimidophenyl)butyric acid hydride*HCl*l/2 dioxane (MPBH), succinimidyl 4-(N-maleimidomethyl)cyclohexane-l- carboxylate (SMCC), sulfosuccinimidyl (4(azidosalicylamido)hexanoate (Sulfo-NHS-LC- ASA), sulfosuccinimidyl-2-[6-(biotinamido)-2-(p-azidobenzamido)-hexanoamido]ethyl- l,3'-dithiopropionate (Sulfo-SBED), and disuccinimidyl suberate (DSS), N-succinimidyl-3- (2-pyridyldithio)-propionate (SPDP)), sulfo-succinimidyl 4-(N- maleimi domethyl)cyclohexane-l -carboxylate (Sulfo-SMCC), l-ethyl-3-(3- dimethylaminopropyl)-carbodiimide hydrochloride (EDC), and bis-diazobenzidine (BDB). In another aspect ofthe invention, the targeting element is covalently bound to a gene delivery vehicle by a multifunctional linking agent further comprising a carbohydrate linking agent. Preferably, the carbohydrate ofthe carbohydrate linking agent is a monosaccharide, a disaccharide, or an oligosaccharide. When the carbohydrate is a monosaccharide, the monosaccharide is preferably selected from the group consisting of fructosamine, glucosamine, galactosamine, and mannosamine. When the carbohydrate is a disaccharide, the disaccharide is preferably selected from the group consisting of aminated sucrose, animated maltose, aminated trehalose, and aminated lactose. When the carbohydrate is an oligosaccharide, the oligosaccharide is preferably selected from the group consisting of N-acetyl-D-glucosamine, N-acetyl-D-galactosamine, aminated N- acetylmuramic acid, and aminated N-acetyl-D-neuraminic acid.
Any gene delivery vehicle is suitable for uses in this invention. Preferred gene delivery vehicles include recombinant viral vectors, nucleic acids associated with liposomes, nucleic acids associated with polycations, modified bacteriophage, and bacteria. When a recombinant viral vector is utilized, preferably it is a recombinant virus derived from a virus selected from the group consisting of adenovirus, astrovirus, coronavirus, hepadnevirus, orthomyxovirus, papovavirus, paramyxovirus, parvovirus, picornavirus, and poxvirus. Most preferably, the recombinant viral vector is a togavirus or a retrovirus. In particular, when the togavirus is an alphavirus, the alphavirus is preferably selected from the group consisting of Sindbis virus, Semliki Forest virus, Middleberg virus, Ross River virus, and Venezuelan equine encephalitis virus, When the recombinant viral vector is a retrovirus, the retrovirus is preferably selected from the group consisting of avian leukosis virus, bovine leukemia virus, murine leukemia virus, mink-cell focus-inducing virus, murine sarcoma virus, reticuloendotheliosis virus, gibbon ape leukemia virus, Mason-Pfizer monkey virus, rous sarcoma virus, baboon endogenous virus, endogenous feline retrovirus (e.g., RDl 14), and mouse or rat gL30 sequences used as a retroviral vector. When the retrovirus is a murine leukemia retrovirus, the virus is preferably selected from the group consisting of Abelson, Friend, Graffi, Kristen, Rauscher, and Moloney leukemia retrovirus, with the latter being particularly preferred. It is preferable that the recombinant viral vector is replication defective. Within a preferred embodiment ofthe invention, the gene delivery vehicle further comprises a fusagenic protein. Particularly preferred fusagenic proteins include those selected from the group consisting of ecotropic murine retrovirus envelope proteins, herpes simplex virus gH fusagenic proteins, heφes simplex virus gL fusagenic proteins, Epstein-Barr fusagenic proteins, measles virus fusagenic proteins, and malarial sporozoite fusagenic proteins.
Within the context of the invention, suitable targeting elements include proteins, peptides, carbohydrates, and small molecules which specifically interact with a molecule, e.g., a receptor, present on the surface ofthe cell or tissue type(s) to be targeted. In one embodiment, the targeting element employed is a protein. In preferred embodiments, the protein-based targeting element is selected from the group consisting of a receptor, a ligand, and an antibody (or antigen binding domain thereof). In particular, when the targeting element is a receptor, the receptor is preferably selected from the group consisting of CD4, CD8, CD21, and fimbriae. When the targeting element is a ligand, the ligand is preferably selected from a cytokine, lymphokine, polypeptide hormone, peptide or nonprotein molecule. Representative cytokines include IL-l type II, IL-2b, IL-3, IL-6, IL-7, IL-8, IL- 10, and IL-l 2. Representative lymphokines include GM-CSF, G-CSF, M-CSF, SCF, and the flk-2 ligand. Representative polypeptide hormones include FSH, GH, luteinizing hormone, MSH, erythropoietin, nerve growth factor, VEGF, UP A, and epidermal growth factor. Representative polypeptides include neuromedin, insulin, transferrin, asialoglycoprotein, lectin, and collagen and a representative nonprotein molecule is LDL. When the targeting element is a monoclonal antibody, the monoclonal antibody is preferably selected from the group consisting of 12.8, MylO, HPCA-2, anti-CD8, 4D5,
GFD-OA-pl85-l, CC49, B72.3, ZCEO25, c-SF-25, 14C1, and anti-H/Ley/Leb. Another aspect ofthe invention relates to target cells transduced with a gene delivery vehicle targeted in accordance with the teachings provided herein. In one embodiment, target cells are disease associated, e.g., neoplastic cells, autoimmune cells, or cells infected with a viral or bacterial pathogen. In another embodiment, targeted cells are cells which normally express, or do not express, as the case may be, a particular gene product in an appropriate physiological amount, for example, b-islet cells in the pancreas which produce insulin in non-diabetic animals, pituitary cells which express growth hormone, and hematopoietic tissue which expresses ADA.
In another aspect of the invention, pharmaceutical compositions are provided which comprise a targeted gene delivery vehicle in a pharmaceutically acceptable carrier. Preferably, the pharmaceutical composition is lyophilized, wherein the targeted gene delivery vehicle upon reconstitution is suitable for administration to animals.
In another aspect, methods for making the compositions described herein are provided. Such methods comprise mixing a gene delivery vehicle and a targeting element in the presence of a multifunctional linking agent under conditions which allow the multifunctional linking agent to become covalently bound to both the gene delivery vehicle and targeting element(s).
Still other aspects ofthe invention concern methods for administering a therapeutically effective amount ofthe targeted gene delivery vehicles. In certain embodiments, targeted gene delivery vehicles are administered to animals in order to treat disease. Other emboidments concern the prophylactic use of targeted gene delivery vehicles in animals. Representative diseases which may be treated using targeted gene delivery vehicles include diseases selected from the group consisting of an infectious disease, cancer, a genetic disease, an autoimmune disease, and a cardiovascular disease.
Detailed Description ofthe Invention
The present invention provides gene delivery vehicles (GDVs) to which targeting elements have been covalently bound to the exterior surface of he GDV by a multifunctional linking agent such that the GDV is be targeted to a selected cell or tissue type. A. Gene Delivery Vehicles
A gene delivery vehicle is a composition capable of delivering a nucleic acid molecule to a eukaryotic cell. Representative examples of gene delivery vehicles include recombinant viral vectors (e.g., retroviruses; see WO 89/09271, and alphaviruses such as Sindbis; see WO 95/07994), other recombinant and non-recombinant viral systems (e.g., adenovirus; see WO 93/19191), nucleic acid molecules associated with one or more condensing agents (see WO 93/03709), nucleic acid molecules associated with liposomes (Wang, et al, PNAS 84:7%51, 1987), modified bacteriophage, or bacteria. In whatever form, the GDV carries a nucleic acid molecule to be transferred to a target cell. Once introduced, the nucleic acid molecule may itself exhibit biological activity which directly effects the target cell (e.g., a ribozyme, antisense RNA, etc.) Alternatively, the nucleic acid molecule may encode a desired substance such as a protein, (e.g., an enzyme or an antibody) and/or a nucleic acid having biological activity which, once expressed, will affect the target cell. Examples of nucleic acids which themselves have biological activity include an antisense nucleic acid molecules and ribozymes.
Preferably, the GDV is a recombinant viral vector derived from a virus such as an astrovirus, coronavirus, orthomyxovirus, papovavirus, paramyxovirus, parvovirus, picornavirus, poxvirus, retrovirus, togavirus or adenovirus. In a preferred embodiment, the recombinant viral vector is a recombinant retroviral vector. Retroviral GDVs may be readily constructed from a wide variety of retroviruses, including for example, B, C, and D type retroviruses, as well as spumaviruses and lentiviruses (see RNA Tumor Viruses, Second Edition, Cold Spring Harbor Laboratory, 1985). Representative examples of suitable retroviruses include those discussed in RNA Tumor Viruses, supra, as well as a variety of xenotropic retroviruses (e.g., NZB-X1, NZB-X2 and NZB9.] (see O'Neill et al, J. Vir. 53: 100, 1985)) and polytropic retroviruses (e.g., MCF and MCF-MLV (see Kelly et al, J. Vir. 45(\):29l, 1983)). Such retroviruses may be readily obtained from depositories or collections such as the American Type Culture Collection (ATCC, Rockville, MD), or isolated from known sources using commonly available techniques. Numerous retroviral GDVs which may be utilized in practicing the present invention are described in U.S. Patent Nos. 5,219,740 and 4,777,127, EP 345,242 and WO 91/02805. Particularly preferred retroviruses are derived from retroviruses which include avian leukosis virus (ATCC Nos. VR-535 and VR-247), bovine leukemia virus (VR-1315), murine leukemia virus (MLV), mink-cell focus-inducing virus (Koch et al, J. Vir. 49:828, 1984; and Oliff et al, J. Vir. 48:542, 1983), murine sarcoma virus (ATCC Nos. VR-844, 45010 and 45016), reticuloendotheliosis virus (ATCC Nos VR-994, VR-770 and 4501 1), rous sarcoma virus, Mason-Pfizer monkey virus, baboon endogenous virus, endogenous feline retrovirus (e.g., RD1 14), and mouse or rat gL30 sequences used as a retroviral vector. Particularly preferred strains of MLV from which recombinant retroviruses can be generated include 4070A and 1504A (Hartley and Rowe, J. Vir. 19:19, 1976), Abelson (ATCC No. VR-999), Friend (ATCC No. VR-245), Graffi (Ru et al. , J. Vir. 67:4722, 1993 ; and
Yantchev Neoplasma 26:397, 1979), Gross (ATCC No. VR-590), Kirsten (Albino et al, J. Exp. Med. 164:17 0, 1986), Harvey sarcoma virus (Manly et al , J. Vir. 62:3540, 1988; and Albino et al, J. Exp. Med. 164: 7 0, 1986) and Rauscher (ATCC No. VR-998), and Moloney MLV (ATCC No. VR-190). A particularly preferred non-mouse retrovirus is rous sarcoma virus. Preferred rous sarcoma viruses include Bratislava (Manly et al , J. Vir. 62:3540, 1988; and Albino et al, J. Exp. Med. 164: 7 0, 1986), Bryan high titer (e.g., ATCC Nos. VR-334, VR-657, VR-726, VR-659, and VR-728), Bryan standard (ATCC No. VR-140), Carr-Zilber (Adgighitov et al, Neoplasma 27:159, 1980), Engelbreth-Holm (Laurent et al, Biochem Biophys Acta 908:241, 1987), Harris, Prague (e.g., ATCC Nos. VR-772, and 45033), and Schmidt-Ruppin (e.g. ATCC Nos. VR-724, VR-725, VR-354). Any of the above retroviruses may be readily utilized in order to assemble or construct retroviral GDVs given the disclosure provided herein and standard recombinant techniques (e.g., Sambrook et al, Molecular Cloning: A Laboratory Manual, 2d ed., Cold Spring Harbor Laboratory Press, 1989 and Kunkle, PNAS 52:488, 1985) known in the art. In addition, within certain embodiments of the invention, portions ofthe retroviral GDVs may be derived from different retroviruses. For example, within one embodiment of the invention, recombinant retroviral vector LTRs may be derived from a murine sarcoma virus, a tRNA binding site from a rous sarcoma virus, a packaging signal from a MLV, and an origin of second strand synthesis from an avian leukosis virus. These recombinant retroviral vectors may be used to generate transduction competent retroviral vector particles by introducing them into appropriate packaging cell lines (see U.S. Patent No. 5,591,624, issued January 1, 1996). In addition recombinant retroviruses can be produced which direct the site-specific integration ofthe recombinant retroviral genome into specific regions of the host cell DNA. Such site-specific integration can be mediated by a chimeric integrase incoφorated into the retroviral particle. See, for example, US96/06727, filed May 10, 1996. It is preferable that the recombinant viral vector is a replication defective recombinant virus. Preferably, a retroviral vector construct should include a 5' LTR, a tRNA binding site, a packaging signal, a nucleic acid molecule encoding one or more genes of interest, an origin of second strand DNA synthesis, and a 3' LTR. A retroviral vector construct may also include transcriptional promoter/enhancer or locus defining element(s), or other elements which control gene expression by means such as alternate splicing, nuclear RNA export, post-translational modification of messenger, or post-transcriptional modification of protein. Optionally, a retroviral vector construct may also include one or more selectable markers that confer resistance of vector transduced or transfected cells to thymidine kinase (TK), hygromycin, phleomycin, histidinol, or dihydrofolate reductase (DHFR), as well as one or more specific restriction sites and a translation termination sequence.
Within another preferred embodiment ofthe invention, the GDV is derived from a togavirus. Preferred togaviruses include alphaviruses, in particular, those described in WO 95/07994 filed September 15, 1994. A representative alphavirus in Sindbis virus. Briefly, Sindbis viral vectors typically comprise a 5' sequence capable of initiating Sindbis virus transcription, a nucleotide sequence encoding Sindbis non-structural proteins, a viral junction region inactivated so as to prevent subgenomic fragment transcription, and a Sindbis RNA polymerase recognition sequence. Optionally, the viral junction region may be modified so that subgenomic fragment transcription is reduced, increased, or maintained. As will be appreciated by those in the art, corresponding regions from other alphaviruses may be used in place of those described above. Within another embodiment, the viral junction region of an alphavirus-derived GDV may comprise a first viral junction region which has been inactivated in order to prevent transcription ofthe subgenomic fragment and a second viral junction region which has been modified such that subgenomic fragment transcription is reduced. Within yet another embodiment, an alphavirus-derived GDV may also include a 5' promoter capable of initiating synthesis of viral RNA from cDN A and a 3' sequence which controls transcription termination. In other embodiments, the recombinant alphaviral vectors do not encode structural proteins and the nucleic acid molecule may be located downstream from the viral junction region. In vector constructs having a second viral junction region, the nucleic acid molecule encoding the gene(s) of interest may be located downstream from the second viral junction region. In such instances, the vector construct may further comprise a polylinker located between the viral junction region and the nucleic acid molecule. Preferably, the polylinker does not contain restriction sites found in the corresponding naturally occuring alphavirus or recombinant vector backbones made therefrom.
Other recombinant togaviral vectors that may be utilized in the present invention include those derived from Semliki Forest virus (ATCC VR-67; ATCC VR-1247),
Middleberg virus (ATCC VR-370), Ross River virus (ATCC VR-373; ATCC VR-1246), Venezuelan equine encephalitis virus (ATCC VR923; ATCC VR-1250; ATCC VR-1249; ATCC VR-532), and those described within U.S. patents 5,091,309, 5,217,879, and WO 92/10578. The above described Sindbis vector constructs, as well as numerous similar vector constructs, may be readily prepared essentially as described in WO95/07994.
Similarly, the recombinant viral vector may be a recombinant adenoviral vector. Such vectors may be readily prepared and utilized given the disclosure provided herein (see Berkner, Biotechniques 6:616, 1988, and Rosenfeld et al, Science 252:431, 1991, WO 93/07283, WO 93/06223, and WO 93/07282). Other viral vectors suitable for use in the present invention include, for example, those derived from poliovirus (Evans et al, Nature 339:385, 1989, and Sabin et al, J. Biol. Standardization 7:115, 1973) (ATCC VR-58); rhinovirus (Arnold et al, J. Cell. Biochem. L401, 1990) (ATCC VR-1110); pox viruses, such as canary pox virus or vaccinia virus (Fisher-Hoch t α/., PNΛ,S' 56:317, 1989; Flexner et al, Ann. N Y. Acad. Sci. 569:86, 1989; Flexner et al, Vaccine 8:17, 1990; U.S. 4,603,112 and U.S. 4,769,330; WO 89/01973)
(ATCC VR-1 1 1 ; ATCC VR-2010); SV40 (Mulligan et al, Nature 277. 108, 1979) (ATCC VR-305), (Madzak et al, J. Gen. Vir. 73:1533, 1992); influenza virus (Luytjes et al, Cell 59:1107, 1989; McMicheal et al, The New England Journal of Medicine 309: 13, 1983; and Yap et al, Nature 273:238, 1978) (ATCC VR-797); parvovirus such as adeno-associated virus (Samulski et al, J. Vir. 63:3822, 1989, and Mendelson et al. , Virology 166: 54, 1988) (ATCC VR-645); heφes simplex virus (Kit et al, Adv. Exp. Med. Biol. 275:219, 1989) (ATCC VR-977; ATCC VR-260); Nature 277: 108, 1979); human immunodeficiency virus (EPO 386,882, Buchschacher et al, J. Vir. 66:2731, 1992); measles virus (EPO 440,219) (ATCC VR-24); A (ATCC VR-67; ATCC VR-1247), Aura (ATCC VR-368), Bebaru virus (ATCC VR-600; ATCC VR-1240), Cabassou (ATCC VR-922), Chikungunya virus (ATCC VR-64; ATCC VR-1241), Fort Morgan (ATCC VR-924), Getah virus (ATCC VR-369; ATCC VR-1243), Kyzylagach (ATCC VR-927), Mayaro (ATCC VR-66), Mucambo virus (ATCC VR-580; ATCC VR-1244), Ndumu (ATCC VR-371), Pixuna virus (ATCC VR- 372; ATCC VR-1245), Tonate (ATCC VR-925), Triniti (ATCC VR-469), Una (ATCC VR- 374), Whataroa (ATCC VR-926), Y-62-33 (ATCC VR-375), O'Nyong virus, Eastern encephalitis virus (ATCC VR-65; ATCC VR-1242), Western encephalitis virus (ATCC
VR-70; ATCC VR-1251; ATCC VR-622; ATCC VR-1252), and coronavirus (Hamre et al, Proc. Soc. Exp. Biol. Med. 727: 190, 1966) (ATCC VR-740).
In still another embodiment, the GDV comprises a nucleic acid molecule associated with a condensing agent (e.g., polycations). Polycations condense the nucleic acid molecule by masking the negatively charged phosphate backbone, permitting the molecule to fold into a more compact form.
In an alternative embodiment, the GDV is a nucleic acid molecule associated with a liposome. Liposomes are small, lipid vesicles comprised of an aqueous compartment enclosed by a lipid bilayer, typically spherical or slightly elongated structures several hundred Angstroms in diameter. Under appropriate conditions, a liposome can fuse with the plasma membrane of a cell or with the membrane of an endocytic vesicle within a cell which has internalized the liposome, thereby releasing its contents into the cytoplasm. Prior to interaction with the surface ofa cell, however, the liposome membrane acts as a relatively impermeable barrier which sequesters and protects its contents, for example, from degradative enzymes in the plasma. Additionally, because a liposome is a synthetic structure, specially designed liposomes can be produced that incoφorate desirable features (see Stryer, L., Biochemistry, pp236-240, 1975 (W.H. Freeman, San Francisco, CA); Szoka et al, Biochim. Biophys. Acta 600:1, 1980; Bayer et al, Biochim. Biophys. Acta. 550:464, 1979; Rivnay et al. , Meth. Enzymol 149: 119, 1987; Wang et al , PNAS 84: 7851 , 1987, Plant et al, Anal Biochem. 176:420, 1989, and U.S. Patent No. 4,762,915). Liposomes can encapsulate a variety of nucleic acid molecules including DNA, RNA, plasmids, and vectors such those described in the present invention.
In yet another embodiment, the GDV is a modified bacteriophage which can deliver therapeutic nucleic acid molecules to eukaryotic cells. One such representative bacteriophage system (based on bacteriophage lambda) is described in co-owned U.S.S.N. 08/366,522, filed December 30, 1994. In one embodiment, the only lambda nucleotide sequences contained in the nucleic acid molecule of such a lambda-based system are two cos sites, one at the 5' and 3' ends ofthe linear DNA to be packaged, leaving up to about 50 Kb available for therapeutic gene(s) or other sequences. These and other cosmid versions of such a gene transfer system require use of specific mutant gpJ-containing in vitro packaging extracts to generate infectious bacteriophage particles. Also included is an origin of replication (e.g., ColEl) which allows replication in bacteria and frequently a gene coding for a selectable marker. The nucleic acid molecules are cloned into the cosmid vector between the cos sites (see WO 96/21007, filed December 20, 1995). In another embodiment, the GDV is a bacterial cell comprising a nucleic acid molecule for delivery to eukaryotic cells. For example, the bacterial cell may express and present a cytotoxic agent, such as an anti-tumor agent, on its surface or, alternatively, secrete it into the surrounding medium. Representative examples of bacterial cell GDVs include BCG (Stover, Nature 351:456, 1991) and Salmonella (Newton et al, Science 244:70, 1989).
In addition to the vector systems described above, a targeted GDV according to the invention, may carry a eukaryotic layered vector initiation system or other nucleic acid expression systems. See WO 95/07994 for additional details in the construction of such systems.
B. Nucleic Acid Molecules
GDVs useful in the practice of this invention above may include or contain one or more nucleic acid molecules. A wide variety of nucleic acid molecules may be utilized within the context ofthe present invention, including, for example, those which themselves have biological activity or which encode gene products (e.g., proteins, anti-sense RNAs, and ribozymes, among others). The GDVs ofthe invention can contain a variety of nulceic acid sequences of therapeutic interest. See e.g., WO 91/02805, WO 95/07994, WO 96/20414 and U.S. Patent Nos. 5,399,346, 5,580,859, 5,192,553 for a description of such nucleic acid sequences.
In yet another aspect, a targeted GDV may deliver a ribozyme directly to the target cell. Alternatively, a GDV may deliver a nucleic acid molecule which encodes one or more ribozymes (Haseloff and Gerlach, Nature 334:585, 1989).
In other embodiments, the nucleic acid molecule encodes one or more proteins. Representative proteins which may be encoded by a nucleic acid molecule include, for example, receptors, cytotoxins, immunomodulatory factors (e.g., lymphokines and cytokines), immunoreactive proteins (e.g., inhibitory, immunogenic and immunosuppressive polypeptides) and replacement proteins (e.g., polypeptide hormones and enzymes expressed at insufficient levels in patients' suffering from the corresponding disease). In the case of receptors, many are involved in cell growth, either by monitoring the external environment and signaling the cell to respond appropriately. Other receptors are intracellular in nature. If either the monitoring or signaling mechanisms fail, the cell will no longer respond appropriately to particular signals and may therefore exhibit uncontrolled or aberrant growth. Many receptors or receptor-like structures may function as altered cellular components, including, for example, neu (also referred to as the human epidermal growth factor receptor (HER) Slamon et al, Science 244:707, 1989; Slamon et al , Cancer Cells 7:371 , 1989; Shih et al , Nature 290:261 , 1981 Schechter, Nature
372:513, 1984; Coussens et al, Science 230:1132, 1985) and mutated or altered forms of the thyroid hormone receptor, the PDGF receptor, the insulin receptor, the interleukin receptors (e.g., IL-l, -2, -3, etc. receptors), or the CSF receptors, such as the G-CSF, GM- CSF, or M-CSF receptors. Alterations in these and other receptors result in the production of protein(s) or receptors containing novel coding sequence(s) which may be used as a marker of tumorigenic cells. An immune response directed against these proteins may be utilized to destroy cells expressing the altered sequence(s), as described in WO 89/09271 and WO 93/10814.
Representative examples of cytotoxins that may be encoded by nucleic acid molecule carried by a targeted GDV include, for example, ricin (Lamb et al., Eur. J.
Biochem. 148:265-270, 1985), abrin (Wood et al., Eur. J. Biochem. 198:723-732, 1991 ; Evensen et al., J. of Biol. Chem. 266:6848-6852, 1991 ; Collins et al., J. of Biol. Chem. 265:8665-8669, 1990; Chen et al., Fed. of Eur. Biochem Soc. 309:1 15-1 18, 1992), diphtheria toxin (Tweten et al., J. Biol Chem. 260:10392-10394, 1985), cholera toxin (Mekalanos et al., Nature 306:551-557, 1983; Sanchez & Holmgren, PNAS 56:481-485, 1989), gelonin (Stiφe et al., J. Biol. Chem. 255:6947-6953, 1980), pokeweed (Irvin,
Pharmac. Ther. 27:371-387, 1983), antiviral protein (Barbieri et al., Biochem. J. 203:55-59, 1982; Irvin et al., Arch. Biochem. & Biophys. 200:418-425, 1980; Irvin, Arch. Biochem. & Biophys. 769:522-528, 1975), tritin, Shigella toxin (Calderwood et al., PNAS 54:4364-4368, 1987; Jackson et al, Microb. Path. 2:147-153, 1987), and Pseudomonas exotoxin A (Carroll and Collier, J. Biol. Chem. 262:8707-8711, 1987).
Within other embodiments ofthe invention, the targeted GDV contains a nucleic acid molecule encoding a product which is not itself toxic, but when processed or modified by a protein, such as a protease specific to a viral or other pathogen, is converted into a toxic form. For example, a GDV may carry a nucleic acid molecule encoding a proprotein which becomes toxic upon processing by a viral, e.g., HIV, protease. For example, an engineered inactive proprotein form ofthe toxic ricin or diphtheria A chain can be cleaved to the active form by arranging for a virally encoded protease to recognize and cleave the "pro" element (see WO 95/14091).
Within other embodiments ofthe invention, nucleic acid molecules are provided which express one or more gene products capable of activating an otherwise inactive precursor into an active inhibitor of a pathogenic agent, or a conditional toxic palliative, i.e., palliatives that are toxic for the cell expressing the pathogenic condition. A wide variety of inactive precursors may be converted into active inhibitors of a pathogenic agent. For example, antiviral nucieoside analogs such as AZT or ddC are metabolized by cellular mechanisms to a nucleotide triphosphate form in order to specifically inhibit retroviral reverse transcriptase and thus inhibit viral replication (Furmam et al, Proc. Natl Acad. Sci. USA 53:8333-8337, 1986). GDVs which comprise a nucleic acid molecule which encodes a substance (e.g., a protein) such as heφes simplex virus thymidine kinase (HSVTK), Varicella Zoster virus thymidine kinase (VZVTK), or other such "pro-drug activating enzymes" which selectively monophosphorylate certain purine arabinosides and substituted pyrimidine compounds (e.g., AZT or ddC), converting them to cytotoxic or cytostatic metabolites, are particularly useful. Similarly, such GDVs may be utilized to express a pro¬ drug activating enzyme in a target cell which can be later destroyed by exposure to the appropriate "pro-drug", (e.g., gancyclovir, acyclovir, or any of their analogs (e.g., FIAU, FIAC, DHPG)) which is then phosphorylated into its corresponding active nucleotide triphosphate form.
In a manner similar to the preceding embodiment, a nucleic acid molecule may code for a protein which performs phosphorylation, phosphoribosylation, ribosylation, or other metabolism of a purine- or pyrimidine-based drug. Such nucleic acid molecules may have no equivalent in mammalian cells, and may be derived from organisms such as a virus, bacterium, fungus, or protozoan. Representative examples include nucleic acid molecules which encode: E. coli guanine phosphoribosyl transferase ("gpt"), which converts thioxanthine into thioxanthine monophosphate (see Besnard et al, Mol Cell Biol. 7:4139, 1987); alkaline phosphatase, which converts inactive phosphorylated compounds such as mitomycin phosphate and doxorubicin-phosphate to toxic dephosphorylated compounds; fungal (e.g., Fusarium oxysporum) or bacterial cytosine deaminase, which converts 5- fluorocytosine to 5-fluorouracil (Mullen, PNAS 89:33, 1992); carboxypeptidase G2, which cleaves glutamic acid from para-N-bis (2-chloroethyl) aminobenzoyl glutamic acid, to create a toxic benzoic acid mustard; and Penicillin- V amidase, which converts phenoxyacetamide derivatives of doxorubicin and melphalan to toxic compounds. Conditionally lethal products (or "pro-drugs") of this type have application to many presently known purine- or pyrimidine-based anticancer drugs, which often require intracellular ribosylation or phosphorylation to become effective cytotoxic agents. The conditionally lethal gene product could also metabolize a nontoxic drug which is not a purine or pyrimidine analog to a cytotoxic form (see Searle et al., Brit. J. Cancer 53:377, 1986).
Within other embodiments of the present invention, the nucleic acid molecule carried by the targeted GDV may direct the expression of one or more immunomodulatory factors. An immunomodulatory factor is one which, when expressed by one or more ofthe cells involved in an immune response, or which, when added exogenously to the cells, causes an immune response to be different in quality or potency from that which would have occurred in the absence of the factor. The immunomodulatory factor may also be expressed from an endogenous gene whose expression is driven or controlled by a gene product encoded by the nucleic acid molecule. The quality or potency of a response may be measured by a variety of known assays, for example, in vitro assays which measure cellular proliferation (e.g., ^H thymidine uptake), and in vitro cytotoxic assays (e.g., which measure 51 Cr release) (see, Warner et al, AIDS Res. and Human Retroviruses 7:645, 1991 ). Immunomodulatory factors may be active both in vivo and ex vivo. Representative examples of such immunomodulatory factors include, for example, cytokines, such as IL-l, IL-2 (Karupiah et al, J. Immunology 144:290, 1990; Weber et al, J. Exp. Med. 766:1716, 1987; Gansbacher t α/., J. Exp. Med. 772:1217, 1990; U.S. Patent No. 4,738,927), IL-3, IL- 4 (Tepper et al, Cell 57:503, 1989, Golumbek et al, Science 254:713, 1991 and U.S. Patent No. 5,017,691), IL-5, IL-6 (Brakenhof et al. , J. Immunol 739:4116, 1987, and WO 90/06370), IL-7 (U.S. Patent No. 4,965,195) , IL-8, IL-9, IL-10, IL-11, IL-12 (Wolf et al, J. Immuno. 46:3074, 1991 and Gubler et al, PNAS 55:4143, 1991), IL-13 (WO 94/04680), IL-14, IL-15, a-interferon (Finter et al, Drugs 42(5):749, 1991 , Nagata et al , Nature 284:316, 1980; Familletti et al, Methods in Em. 75:387, 1981, Twu et al, PNAS USA 56:2046, 1989, Faktor et al, Oncogene 5:867, 1990, U.S. Patent No. 4,892,743, U.S. Patent No. 4,966,843, and WO 85/02862), b-interferon (Seif et al, J. Vir. 65:664, 1991), g- interferons (Radford et al, The American Society ofHepatology 9:2008, 1991, Watanabe et al. , PNAS 56:9456, 1989, Gansbacher et al. , Cancer Research 50:7820, 1990, Maio et al. , Can. Immunol. Immunother. 30:34, 1989, U.S. Patent No. 4,762,791, and U.S. Patent No. 4,727,138), G-CSF (U.S. Patent Nos. 4,999,291 and 4,810,643), GM-CSF (WO 85/04188), tumor necrosis factors (TNFs) (Jayaraman et al., J. Immunology 144:942, 1990), CD3 (Krissanen et al, Immunogenetics 26:258, 1987), CD8, ICAM-1 (Altman et al, Nature 335:512, 1989; Simmons et al, Nature 337:624, 1988), ICAM-2 (Singer Science 255: 1671, 1992), LFA-1 (Altmann et al, Nature 335:521, 1989), LFA-3 (Wallner et al, J. Exp. Med. 166(4):923, 1987), and other proteins such as HLA Class I molecules, HLA Class II molecules, B7 (Freeman et al, J. Immuno. 143:2714, 1989), B7-2, b2-microglobulin
(Parnes et al, PNAS 78:2253, 1981), chaperones, and MHC linked transporter proteins or analogs thereof (Powis et al, Nature 354:528, 1991). The choice of which immunomodulatory factor(s) to employ is based upon the therapeutic effects ofthe factor. Preferred immunomodulatory factors include a-interferon, g-interferon, and IL-2 (see WO 94/21794).
Nucleic acid molecules that encode the above-described products, as well as other nucleic acid molecules that are advantageous for use within the present invention, may be readily obtained from a variety of sources, including, for example, depositories such as the American Type Culture Collection, or from commercial sources such as British Bio- Technology Limited (Cowley, Oxford England). Alternatively, cDNA sequences for use with the present invention may be obtained from cells which express or contain the sequences, such as by RT PCR from isolated mRNA. Nucleic acid molecules suitable for use with the present invention may also be synthesized in whole or in part, for example, on an Applied Biosystems Inc. DNA synthesizer (e.g., ABl DNA synthesizer model 392 (Foster City, CA).
C. Targeting Elements A targeting element is a molecule that has affinity for a molecule present on the surface of a target cell. As utilized within the context of the present invention, targeting elements are considered to be "capable of interacting with a molecule present on the surface" of a selected cell type when a biological effect ofthe coupled targeting element may be seen in that cell type, or, when there is greater than at least about a 10-fold difference, and preferably greater than at least about a 25, 50, or 100-fold difference, between the binding ofthe targeting element to target cells and non-target cells. Generally, it is preferable that the targeting element interact with a molecule present on the surface of the selected cell type with a KD of less than about 10"^M, preferably less than about 10~6M, more preferably less than about 10"^M, and most preferably less than about 10'^M (as determined by a Scatchard analysis, see Scatchard, Ann. N Y. Acad. Sci. 51:660, 1949).
Suitable targeting elements are preferably non-immunogenic, not degraded by proteolysis, and not scavenged by the immune system. Particularly preferred targeting elements should have a half-life within an animal of between about 10 minutes and about 1 week.
Representative examples of suitable targeting elements include receptors, ligands, and antibodies (or antigen binding domains thereof). Preferable receptor targeting elements include, for example, CD4 to target B-cells, CD8 to target T-cells, and CD21 to target B- cells. Many other suitable receptors which can be used as targeting elements in accordance with the teachings provided herein are known in the art.
When the targeting element is a ligand, it is preferably selected from a cytokine, lymphokine, polypeptide hormone, polypeptide or nonprotein molecule, for example, a carbohydrate. Preferred cytokine ligands include IL-l type II to target myeloid cells or to target the interleukin- 1 receptor on T-cells (Fanslow et al, Science 245:739, 1990), IL2b to target B and T lymphocytes and monocytes, IL-3, SCF, or the flk-2 ligand to target hematopoietic cells, IL-6 to target activated B-cells, IL-7 to target lymphoid and myeloid cells, IL-8 to target T-cells and keratinocytes, and IL-10 to target mast cells. Preferred lymphokine ligands include for example, GM-CSF to target granulocyte and monocyte lineage cells, G-CSF to target granulocyte lineage cells, and M-CSF to target monocyte and macrophage lineage cells.
Preferred polypeptide hormones include for example, follicle stimulating hormone (FSH) to target ovaries and testes, human growth hormone (HGH) to target osteocytes and myocytes, lutenizing hormone to target ovaries and testes, melanocyte stimulating hormone to target melanocytes, erythropoietin to target bone marrow cells, nerve growth factor to target nerve growth factor receptors on neural tumors (Chao et al, Science 232:518, 1986), vasoendothelial growth factor (VEGF) to target cells where increased vascularization occurs, and epidermal growth factor to target epidermal cells. Preferred polypeptides include, for example, fimbriae to target CEA receptors on cancer cells, neuromedin (Conlon, J. Neurochem. 57:988, 1988) to target the cells ofthe uterus for contractile activity, insulin to target insulin receptors on cells for glucose regulation, the Fc receptor to target macrophages (Anderson and Looney, Immun. Today 7:264, 1987), transferrin to target transferrin receptors on tumor cells (Huebers et al, Physio. Rev. 67:520, 1987), asialoglycoprotein to target hepatocytes, urokinase plasminogen activator (UP A) to target endothelial cells, lectins to target specific glycoproteins or glycolipids on the surface of target cells (Sharon and Lis, Science 246:227, 1989), collagen type I to target colon cancer (Pullam and Bodmer, Nature 356:529, 1992) and acetylated low density lipoproteins ("LDL") to target macrophage scavenger receptors and atherosclerotic plaques (see Brown et al. , Ann. Rev. Biochem 52:223, 1983) as well as other acetylated molecules which target macrophage scavenger receptors (Paulinski et al, PNAS 56:1372, 1989). In addition, a polypeptide targeting element which has affinity for a receptor on the target cell may be selected from libraries created utilizing recombinant techniques (see Scott and Smith, Science 249:386, 1990; Devlin et al, Science 249:404, 1990; Houghten et al, Nature 354:84 1991 ; Matthews and Wells, Science 260:\ 1 13,1993 and Nissim et al, EMBO J. 73(3):692, 1994). As with receptors discussed above, numerous other polypeptide ligands suitable for use in practicing the instant invention known in the art.
Preferred nonprotein molecules include for example, targeting elements selected from existing or created organic compound libraries. As stated above the targeting element may also be an antibody directed against a surface molecule ofthe target cell. Preferred antibodies include 12.8 (Andrews et al, Blood 67:842, 1986), and MylO (Civin et α/., J. Immunol 733:157, 1984; commercially available from Becton Dickinson under the designation HPCA-2) to target the anti-CD34 antigen on stem cells, anti-CD4 antibody to target CD4+ T-cells, anti-CD8 antibodies to target CD8+ cells, the HER2/neu monoclonal antibody 4D5 (Sarup et al. , Growth Regul 7 :72, 1991 ) to target ovarian and breast cells, the c-erbB-2 monoclonal antibody GFD-OA-pl85-l (Alper et al, CeU Growth Differ. 7:591, 1990) to target breast cells, the TAG72 monoclonal antibodies CC49 and B72.3 (King et al, J. Biochem. 257:317, 1992) to target colon and breast cells, the carcinoembryonic antigen monoclonal antibody ZCE025 (Nap et al. , Cane. Res. 52:2329, 1992) to target colon carcinoma cells, monoclonal antibody c-SF-25 to target a 125kD antigen on human lung carcinoma (Takahashi et al, Science 259: 1460, 1993); anti- 14C1 antibodies to target human ovarian cancer antigen HCl (Gallagher et al, Br. J.
Cancer 64:35, 1991); and anti-H/Lev/Le" antibodies to target lung carcinoma (Masayuki et al, N Eng. J. Med. 327:14, 1992). In preferred embodiments, when the cells to be targeted are human and the targeted GDV is intended to be administered in vivo, antibodies are preferably humanized. Techniques for the production of antibodies useful in the practice of this invention are known in the art.
In addition to those described above, other targeting elements may be utilized that are capable of interacting with a molecule present on the surface of a selected cell type or when there is a greater than at least about 10-fold difference between the binding ofthe targeting element to the target cells and non-target cells. D. Multifunctional Linking Agents
Multifunctional linking agents are molecules that contain at least two reactive groups separated by a spacer or "bridge." In the practice of this invention, multifunctional linking agents are used to covalently bind a targeting element to a GDV. Upon activation of the reactive groups ofthe multifunctional linking agent in the presence of a GDV and a targeting element, covalent bonds are formed to link the GDV and targeting element together via the multifunctional linking agent. The spacer provides the spatial distance necessary to accommodate steric considerations ofthe moieties to be linked. Different linking agents may be selected based on the lengths of bridges desired for the coupling.
In one method for selecting a desired multifunctional linking agent, a linking agent with a short spacer (4-8 A) is used and the degree of linking between the GDV and the targeting element is determined. If linking is minimal or unsuccessful, a multifunctional linking agent with a longer spacer is then selected. This process may be repeated in an iterative pattern until a linking agent providing the spacing is identified.
A bifunctional linking agent that has identical reactive groups on either end ofthe bridge is said to be homobifunctional. Where the reactive groups are different, the bifunctional linking agent is referred to as a heterobifunctional. Examples of reactive groups include imidoesters, N-hydroxysuccinimidyl (NHS) esters, maleimides, pyridyl disulfides, carbodiimides, and arylazides, as well as others known in the art. The imidoesters and the NHS esters react with primary amines present on the GDV and targeting element, while maleimide and pyridyl disulfide react with sulfhydryl groups present on the GDV and targeting element. Carbodiimides couple carboxyl groups to primary amines present on the GDV and the targeting element. An arylazide is a photoactivatable group that forms reactive nitrene when exposed to ultraviolet or visible light at wavelengths ranging from 250-460 nm. The aryl nitrene thus formed reacts nonselectively to form a covalent bond.
In the present invention, the targeting element is covalently bound to the GDV utilizing "multifunctional linking agents", preferably bifunctional linking agents (e.g., homobifunctional or heterobifunctional linking agents). In particular, a variety of multifunctional linking agents may be utilized and are available through Pierce (Rockford, IL). Representative multifunctional linking agents include 4(4-N-maleimidophenyl)butyric acid hydride»HCl'l/2 dioxane (MPBH; a heterobifunctional non-cleavable linking agent), succinimidyl 4-(N-maleimidomethyl)cyclohexane-l -carboxylate (SMCC; a heterobifunctional linker), sulfosuccinimidyl (4(azidosalicylamido)hexanoate (sulfo-NHS- LC-ASA; a photoactivatable linking agent), sulfosuccinimidyl-2-[6-(biotinamido)-2-(p- azidobenzamido)-hexanoamido]ethyl-l,3'-dithiopropionate (Sulfo-SBED; a trifunctional linking agent having biotin covalently attached to a heterobifunctional reagent comprising a hydroxysuccinimido active ester and a photoreactive aryl azide), and disuccinimidyl suberate (DSS; a homobifunctional N-hydroxysuccinimdyl ester linker). Other multifunctional linking agents that may be utilized include, for example, N-succinimidyl-3- (2-pyridyl dithio) propionate ("SPDP"; Carlson et al, J. Biochem. 773:723, 1978), Sulfosuccinimidyl 4-N-maleimidomethyl) cyclohexane- 1 -carboxylate ("SulfoSMCC"), 1- ethyl-3 (3-dimethylaminopropyl) carbodiimide ("EDC"), and Bis-diazobenzidine ("BDB"). Methods for conjugation of a GDV to a targeting element via a multifunctional linking agent are provided in Example 5, below.
In another embodiment ofthe invention, the multifunctional linking agent further comprises a monosaccharide, disaccharide or an oligosaccharide wherein the carbohydrate is first covalently bound to a targeting element utilizing the linking agents described above. The modified targeting element is then covalently bound to a GDV via the carbohydrate moiety. In a preferred embodiment of this approach, a targeting element is bound to a aminated carbohydrate utilizing a multifunctional linking agent. For example, a homobifunctional linker such as DSS may be utilized to covalently bind the targeting element to the carbohydrate via amine groups present on the targeting element and the aminated carbohydrate. Alternatively, a heterobifunctional linker such as SMCC can be used to bind the carbohydrate to a sulfhydryl present on the targeting element to the amine group ofthe aminated carbohydrate. The modified targeting element may then be bound to the GDV. Briefly, the GDV and the modified targeting element are mixed at various pHs ranging from about 7.4 to about 8.4 and incubated, preferably overnight at about 4°C. Following incubation, the mixture is treated with sodium cyanoborohydride. The reaction mixture is dialyzed at low temperature (about 2°C to 10°C) for a sufficient time (about 1 to 48 hours) to remove cyanoborohydride and sterilized by passage through an appropriate filter. Alternative procedures may be employed, depending on the carbohydrate and linker employed, as those in the art will appreciate.
E. GDV Production Once the GDV has been designed, it must be produced in an amount sufficient for conjugation to a desired targeting element and for administration to an animal. If the GDV is a recombinant viral vector, it may be produced utilizing a packaging system. A variety of viral vector packaging systems are described below in which one or more essential functions ofthe parent virus has been deleted so that it is deficient in some function (e.g., genome replication), but retains a packaging signal and the ability to express gene products from one or more nucleic acid molecules. Representative examples of viral vector packaging systems include those for retroviral vectors, alphaviral vectors and adenoviral vectors. The deleted essential function or functions are provided by packaging cells into which the vector genome can be introduced to yield producer cell lines that then make viral particles encapsidating the recombinant viral vector. In preferred embodiments, such producer cell lines produce viral vectors substantially free from contamination with replication competent virus. The vector genome is then introduced into target cells by an infection event ("transduction") but is incapable of further propagation. In any such situation, it is important to prevent the recombination ofthe various parts of the virus in a producer cell line to give replication competent virus genomes, or to eliminate cells in which this occurs. The expression vector may be readily assembled from any virus utilizing standard recombinant techniques (e.g., Sambrook et. al, Molecular Cloning: A Laboratory Manual, 2d ed. Cold Spring Harbor Laboratory Press, 1989). Further description ofthe construction of retroviral vectors is described in WO 89/09271, herein incoφorated by reference. Within one embodiment ofthe present invention, the GDVs are retroviral vectors.
Typically, such vectors comprise a 5' LTR, a tRNA binding site, a packaging signal, one or more genes of interest, an origin of second strand DNA synthesis, and a 3' LTR, wherein the vector lacks gag/pol or env coding sequences. As utilized herein, a 5' LTR should be understood to include a 5' promoter element and sufficient LTR sequence to allow reverse transcription and integration ofthe DNA form ofthe vector. The 3' LTR includes a polyadenylation signal and sufficient LTR sequence to allow reverse transcription and integration ofthe DNA form of the vector.
When such recombinant retroviral vectors are utilized, it is preferable to utilize packaging cell lines for producing viral particles wherein at least the codons of 5' terminal end ofthe gag/pol gene are modified to take advantage ofthe degenerate nature ofthe genetic code to minimize the possibility of homologous recombination between the vector and sequences in the packaging cell coding for the viral structural proteins. Additional techniques for reducing the possibility of recombination events between vectors present in a packaging cell and the recombinant retroviral genome to be packaged are provided in WO 92/05266, WO 91/02805 and WO 96/20414.
Packaging cell lines suitable for use with the above described recombinant retroviral vectors may be readily prepared using techniques known in the art, and utilized to create producer cell lines for the production of recombinant vector particles.
In a further embodiment ofthe invention, alphavirus packaging cell lines are provided. In particular, alphavirus packaging cell lines are provided wherein the viral structural proteins, supplied in trans from one or more stably integrated expression vectors, are able to encapsidate transfected, transduced, or intracellularly produced vector RNA transcripts in the cytoplasm and release infectious, packaged vector particles through the cell membrane, thus creating an alphavirus vector producing cell line. Alphavirus RNA vector molecules, capable of replicating in the cytoplasm ofthe packaging cell, can be produced initially utilizing, for example, an SP6 or T7 RNA polymerase system to transcribe in vitro a cDNA vector clone encoding the recombinant alphaviral genome which comprises the gene(s) of interest and the alphavirus non-structural proteins. Vector RNA transcripts are then transfected into the alphavirus packaging cell line such that the vector RNA replicates to high levels and is subsequently packaged by viral structural proteins, yielding infectious vector particles.
Packaging cell lines suitable for use with the above described alphaviral vector constructs may be readily prepared (see WO 95/07994).
Within further embodiments ofthe invention, adenovirus packaging cell lines are provided. Adenovirus vectors are derived from nuclear replicating viruses and may be constructed such that they are replication defective. One or more nucleic acid molecules may be carried by adenoviral vectors for delivery to target cells (see Ballay et al. , EMBO J. 4:3861, 1985, Thummel et al, J. Mol. App Genetics 7:435, 1982 and WO 92/05266).
Within another embodiment ofthe invention, a targeted gene delivery vehicle may include one or more fusigenic proteins to assist in gene delivery. Representative fusagenic proteins include ecotropic murine retrovirus envelope proteins, other retrovirus envelope proteins modified to disable normal receptor recognition, fusagenic proteins from heφes simplex virus fusagenic proteins gH and gL, Epstein-Barr virus fusagenic proteins, measles virus fusagenic proteins, malarial sporozoite fusagenic proteins, and other proteins known in the art to have fusogenic properties.
F. Purification of Gene Delivery Vehicles
Once the GDVs are produced, they are preferably purified prior to conjugation to the desired targeting element. In addition, compositions comprising targeted GDVs are preferably purified again prior to administration. The techniques utilized for purification is dependent on the type of GDV to be purified. For example, there are a variety of techniques known in the art which may be used if the GDV is an enveloped recombinant viral vector, a nucleic acid or a liposome. A preferred method is described in co-owned U.S. Patent No. 5,447,859, issued September 5, 1995. The GDVs are typically purified to a level ranging from 0.25% to 25%, and preferably about 5% to 20% before conjugation. In addition, if the GDV is a nucleic acid, there are a variety of techniques known in the art including, for example, purification by CsCl-ethidium bromide gradient, ion- exchange chromatography, gel-filtration chromatography, and differential precipitation with polyethylene glycol. Further description ofthe purification of nucleic acids is provided in Sambrook et. al, Molecular Cloning: A Laboratory Manual, 2d ed. (Cold Spring Harbor Laboratory Press, 1989).
When the GDV is a liposome, a variety of purification methods known to those skilled in the art may be utilized and are described in more detail in Mannino and Gould- Fogerite (BioTechniques 6:682, 1988). Briefly, preparation of liposomes typically involves admixing solutions of one or more purified phospholipids and cholesterol in organic solvents and evaporating the solvents to dryness. An aqueous buffer containing the GDVs is then added to the lipid film and the mixture is sonicated to create a fairly uniform dispersion of liposomes. In certain embodiments, dialysis, gel filtration, or ultracentrifugation is then be used to separate unincoφorated components from the intact liposomes. (Stryer, L., Biochemistry, pp236 1975 (W.H. Freeman, San Francisco); Szoka et al, Biochim. Biophys. Acta 600: , 1980; Bayer et al, Biochim. Biophys. Acta. 550:464, 1979; Rivnay et al, Meth. Enzymol 749:119, 1987; Wang et al, PNAS 84: 7851 , 1987 and, Plant et al, Anal Biochem. 776:420, 1989.
G. GDV/Targeting Element Production
Several linking agents may be utilized to bind target elements to GDV. The methods used vary depending on the available functional groups on the exterior ofthe GDV and the targeting element. For example, if the both the targeting element and the GDV have primary amines available on their surface a multifunctional linking agent such as disuccinimidyl suberate (DSS, Pierce, Rockford, IL) which is a homobifunctional N- hydroxysuccinimdyl ester linking agent. If however, the GDV contains sulfhydryl functional groups on its surface and the targeting element has a primary amine available a heterobifunctional linking agent may be utilized for example succinimidyl 4-(N- maleimidomethyl)cyclohexane-l -carboxylate. If the GDV contains a carboxyl functional group and the targeting element has a sulfhydryl functional group then a heterobifunctional group such as 4(4-N-maleimidophenyI)butyric acid hydride*HCM/2 dioxane may be utilized. Other linking agents may be utilized include trifunctional linking agents which permit binding of a targeting element, a GDV and a third element and light activated linking agents see Example 4 below. Those in the art will appreciate GDV can be bound to targeting elements by a variety of other methods.
H. Purification of GDV/Targeting Element
Several methods may be utilized for the purification of the GDV /targeting element including for example molecular sieve column chromatography (e.g., Sephadex® or Sephacryl®), equilibrium centrifugation (i.e., cesium chloride gradient centrifugation), and sucrose density gradient. Briefly, in molecular sieve column chromatography the column matrix is porous. The size of the pours in the matrix permit smaller molecule to pass into the matrix while other larger molecules are excluded from the matrix. This separates the molecules by size eluting higher molecular weight molecule more quickly then the retained smaller molecules. Both Sephadex® and Sephacryl® are molecular sieve matrices that may be utilized to purify GDV/targeting element. Equilibrium centrifugation has been utilized in the purification of bacteriophage 1 (see Sambrook et al., Cold Spring Harbor Laboratory Press, 1989). Briefly, a cesium chloride gradient is created by layering solutions of increasing density under on another and applying an solution ofthe GDV/targeting element on the surface ofthe gradient. Upon centrifugation the GDV/targeting element will move down the gradient until the density ofthe cesium chloride becomes too dense for the GDV/targeting element to penetrate further. The band formed at this interface contains the purified GDV/targeting element. A sucrose gradient may be utilized to separate the
GDV/targeting element similar to a cesium chloride gradient (see Sambrook et al, supra).
I. Formulation
Following purification ofa composition comprising a targeting element linked to a GDV via a multifunctional linking agent, the preparation is preferably formulated into a pharmaceutical composition containing some or all ofthe following: one or more pharmaceutically acceptable carriers and/or diluents; a saccharide; a high molecular weight structural additive; a buffering component; water; and one or more amino acids. The combination of some or all of these components acts to preserve the activity ofthe targeted GDV upon freezing and lyophilization, or drying through evaporation. Pharmaceutically acceptable carriers or diluents according to the invention are non-toxic to recipients at the dosages and concentrations employed. Representative examples of carriers or diluents for injectable solutions include for example water, isotonic saline solutions (i.e., phosphate- buffered saline or Tris-buffered saline, preferably buffered at physiological pH), mannitol, dextrose, glycerol, and ethanol, as well as polypeptides or proteins such as human serum albumin.
The saccharide provides, among other things, support in the lyophilized or dried state. Although the preferred saccharide is lactose, other saccharides may be used, such as sucrose, mannitol, glucose, trehalose, inositol, fructose, maltose or galactose. In addition, combinations of saccharides can be used, for example, lactose and mannitol, or sucrose and mannitol. A particularly preferred concentration of lactose is 3% to 4% by weight.
Preferably, the concentration ofthe saccharide ranges from 1% to 12% by weight.
If the GDV ofthe composition is a recombinant viral vector, a preferred composition comprises 10 mg/mL mannitol, 1 mg/mL HSA, 20 mM Tris, pH 7.2, and 150 mM NaCl being particularly preferred (see WO 95/10601). Such compositions are stable at -70°C for at least six months.
The pharmaceutical compositions ofthe invention may also additionally include factors to stimulate cell division, and hence, uptake and incoφoration ofthe administered
GDVs. Representative examples of such factors include melanocyte stimulating hormone (MSH) for melanoma, epidermal growth factor (EGF) for breast or other epithelial carcinomas, and the anesthetic bipuvocaine (or related compounds) for intramuscular injection. Particularly preferred methods and compositions for preserving recombinant viruses are described in WO 95/10601 and WO 95/07994.
In other embodiments, differentially targeting GDVs, i.e., GDVs targeted to different tissues, or the same tissue by way of a different interaction, may be provided in a single composition or each targeted GDV may be administered separately to an animal.
Compositions containing multiple targeted GDVs are typically administered in the same composition, but may be simultaneously administered at the same time and same site, such as via the use of a double barreled syringe or by joint formulation. A composition containing one or more different targeted GDVs may also be administered at different sites, as disclosed in WO 96/20731.
Pharmaceutical compositions according to the invention may be provided either as a liquid solution, or as a solid form (e.g., lyophilized or dehydrated) which can be resuspended in a solution prior to administration. Specifically, lyophilization involves the steps of cooling the aqueous suspension below the glass transition temperature or below the eutectic point temperature ofthe aqueous suspension, and removing water from the cooled suspension by sublimation. See Phillips et al, Cryobiology 75:414, 1981 and WO 95/10601.
The resulting composition preferably contains less than 10% water by weight. Once lyophilized, the composition is stable and may be stored at or above -70°C preferably at - 20°C to -25°C. With the evaporative method, water is removed from the aqueous suspension at ambient temperature by evaporation. For example, water may be removed through spray drying (see EPO 520,748). Spray drying apparatus are available from a number of manufacturers (e.g., Drytec, Ltd., Tonbridge, England; Lab-Plant, Ltd., Huddersield, England). Once dehydrated, the targeted GDV composition is stable and may be stored at or above -70°C preferably at -20 C to -25 C. After preparation of the composition, where the GDV is a recombinant virus, the recombinant virus will constitute about 10 ng to 1 mg of material per dose, with about 10 times this amount of material present as copurified contaminants. Preferably, the composition is administered in doses of about 0.1 to 1.0 mL of aqueous solution, which may or may not contain one or more additional pharmaceutically acceptable excipients, stabilizers, or diluents.
Following reconstitution, the compositions are typically administered in vivo via traditional direct routes, such as buccal/sublingual, rectal, oral, nasal, topical, (such as transdermal and ophthalmic), vaginal, pulmonary, intraarterial, intramuscular, intraperitoneal, subcutaneous, intraocular, intranasal, intravenous routes or directly into a specific tissue, such as the liver, bone marrow, or into the tumor in the case of cancer therapy.
Preferably, the composition is administered to an animal via the desired route and then the animal is tested for the desired biological response. Such testing may include immunological screening assays e.g., CTL assays, antibody assays. The test(s) performed will depend on the product produced by the nucleic acid molecule introduced by the targeted GDV and the disease to be treated or prevented. On the basis ofthe results of such testing, the titers ofthe targeted GDVs to be administered may be adjusted to further enhance the desired effect(s). The following examples are offered by way of illustration and not by way of limitation.
Example 1
COV AI.F.NT LINKAGE OF TARGETING ELEMENT TO GDVs
Linking agents are utilized to link GDVs to the selected targeting elements. These linking agents contain at least two reactive groups which, upon activation in the presence of GDV and the targeting element, form covalent bonds thereby coupling the GDV and targeting element. When the reactive groups are identical, the linking agent is said to be homobifunctional. If the reactive groups are different, the linking agent is referred to as a heterobifunctional. Examples of reactive groups include imidoesters, N- hydroxysuccinimidyl (NHS) esters, maleimides, pyridyl disulfides, carbodiimides, and arylazides. The imidoesters and the NHS esters react with primary amines present on GDVs and targeting elements while the maleimide and pyridyl dissulfide react with sulfhydryl groups present on GDVs and targeting elements. Carbodiimides couple carboxyl groups to primary amines present on the GDV and the targeting elements. A photoactivatable arylazide is a group that is photolyzed when exposed to ultraviolet or visible light at wavelengths ranging from 250-460 nm to form a reactive nitrene. The aryl nitrene thus formed non-selectively forms a covalent bond.
In addition, the linking agent may further comprise a monosaccharide, disaccharide or an oligosaccharide, wherein the carbohydrate is covalently bound to a targeting element utilizing the linking agents described above and then the modified targeting element is covalently bound to a GDV via the carbohydrate.
A. Conjugation using 4f4-N-maleimidophenyi ,butyric acid hvdride*HCH/2 dioxane
4(4-N-maleimidophenyl)butyric acid hydride»HCM/2 dioxane (MPBH, Pierce, Rockford, IL) is a heterobifunctional non-cleavable linking agent containing a hydrazide group and maleimide that react with carbohydrates and sulfhydryls, respectively. This protocol provides for the conjugation of glycoproteins present on the surface of a recombinant virus, a polycation, a liposome, bacteriophage or bacterium to thiol-containing proteins of a targeting element. The recombinant virus is first conjugated to MPBH followed by conjugating to the sulfhydryl-containing targeting element. Briefly, approximately 1.0 mL of cold recombinant virus solution having an equivalent protein concentration of about 10 mg/mL is added to 0.1 mL of a cold sodium metα-periodate solution containing 100 mM sodium periodate in 0.1 M sodium acetate buffer, pH 5.5. The oxidation reaction is allowed to proceed for 1.0 hour in the dark at room temperature. Glycerol is added to the mixture to a final concentration of 15 mM and the reaction mixture is incubated for 5 minutes at 0°C. This mixture is then centrifuged at 1000 x g for 15 to 30 minutes using a microconcentrator. Following incubation, the reaction mixture is brought back to its original volume with 0.1 M sodium acetate buffer, pH 5.5, and the centrifugation procedure is repeated two additional times. A 10 mg/mL solution of MPBH is added to the oxidized recombinant virus to a final concentration of 1 mM MPBH and allowed to react with agitation for 2.0 hours at room temperature. The excess MPBH is removed by centrifugation at 1000 x g for 15 to 30 minutes using a microconcentrator. The sample is then brought back to its original volume in 0.1 M sodium phosphate, 50 mM NaCl, pH 7.0. This centrifugation process is repeated twice. Following centrifugation 0.5 mL ofthe solution ofthe targeting element (5 mg/mL ofthe targeting element in 0.1 M sodium phosphate, 50 mM NaCl, pH 7.0 buffer) is added to the MPBH-modified recombinant virus. This reaction mixture is incubated for 2.0 hours at room temperature. The targeting element-conjugated recombinant virus may then be purified by column chromatography.
B. Conjugation using Succinimidyl 4-(N-maleimidomethylteyclohexane-l -carboxylate Succinimidyl 4-(N-maleimidomethyl)cyclohexane-l -carboxylate (Pierce, Rockford, IL) linking agent consists of an N-hydroxysuccinimide (NHS)-ester and a maleimide group connected with a spacer. The NHS ester reacts with a primary amine at pH 7 to 9 and the maleimide reacts with sulfhydryl groups at pH 6.5 to 7.5. This protocol provides for the conjugation of a recombinant virus, a polycation, a liposome, bacteriophage or bacterium to a targeting element via sulfhydryls present in the viral coat proteins ofthe recombinant virus to the primary amines present on the targeting element.
1. Reduction of GDV Proteins to Create Free Sulfhydryls
This procedure may be used when the GDV proteins have insufficient free sulfhydryl groups required for conjugation. A GDV solution is prepared to an equivalent protein concentration of 4.0 mg/mL in a phosphate buffered saline (PBS) solution containing EDTA to a final concentration of 5 mM. A reducing agent is added to this solution containing 0.5 M b-2-mercaptoethanolamine in PBS with 5.0 mM EDTA and the reaction mixture is incubated for 90 minutes at 37°C. Following incubation the modified GDV may be desalted by column chromatography. 2. Maleimide Activation ofthe Targeting element
Approximately 1.0 mg ofthe linker in 50 μL dimethylsulfoxide (DMSO) is added to 4.0 mg/mL of targeting element in 500 μL PBS buffer, pH 7.2. The reaction mixture is incubated for 60 minutes at room temperature. The maleimide activated-targeting element may be desalted by column chromatography.
3. Conjugation
The reduced GDV is mixed with the maleimide activated-targeting element and incubated at 4°C overnight. The targeting element conjugated GDV may be desalted by column chromatography.
C. Conjugation using Sulfosuccinimidyl f4fazidosalicylamido'ιhexanoate Sulfosuccinimidyl (4(azidosalicylamido)hexanoate (sulfo-NHS-LC-ASA, Pierce,
Rockford, IL) is photoreactive, consequently some parts ofthe following conjugation procedure must be performed in a darkened room. Approximately 3 mg of sulfo-NHS-LC- ASA is dissolved in 50 μL of DMSO. This stock solution is diluted 1 :200 with 0.1 M sodium phosphate buffer, pH 7.4. A 2 to 50 molar excess ofthe linker is added to 4.0 mg/mL of targeting element in 500 μL PBS buffer, pH 7.2. The reaction mixture is incubated for 60 minutes at room temperature. The maleimide activated-targeting element may be desalted by column chromatography. An equivalent of 1.0 mg ofthe GDV dissolved in 500 μL PBS is then added to this mixture. The reaction mixture is incubated for 15 minutes at 37°C and then irradiated with long wave UV light for 10 minutes at room temperature. This mixture is then flashed with a bright light for 1 to 3 seconds (three camera flashes). The photoactivated targeting element conjugated GDV may be desalted by column chromatography.
D. Conjugation using Sulfosuccinimidvl-2-[6-rbiotinamido 2-( -azidohenzamido hexanoamidojethyl-l J'-dithiopropionate
Sulfosuccinimidyl-2-[6-(biotinamido)-2-(p-azidobenzamido)-hexanoamido]ethyl- 1 ,3'-dithiopropionate (Sulfo-SBED, Pierce, Rockford, IL) is a trifunctional crosslinking reagent having biotin covalently attached to a heterobifunctional reagent comprising a hydroxysuccinimido active ester and a photoreactive aryl azide. Approximately 1.12 mg of Sulfo-SBED is dissolved in 25 μL DMSO. Approximately 11 μL ofthe Sulfo-SBED is then added to a solution of targeting element containing 5 mg ofthe targeting element in 0.5 mL of 0.1 M PBS, pH 7.2. This mixture is incubated at room temperature for 30 minutes. The linking agent-targeting element conjugate may be desalted by column chromatography. The linking agent-targeting element conjugate is then mixed with the GDV solution having an equivalent protein concentration of 5.0 mg dissolved in 0.5 mL PBS and incubated at room temperature for 3.5 minutes. This reaction mixture is irradiated with long wave UV light for 15 minutes. The targeting element-GDV conjugate may be desalted by column chromatography. Since the linking agent is biotinylated a second molecule conjugated to avidin may be bound to this targeting element-GDV conjugate.
E. Conjugation using Disuccinimidyl Suberate
Disuccinimidyl suberate (DSS, Pierce, Rockford, IL) is a homobifunctional N- hydroxysuccinimdyl ester linking agent. This protocol provides for the conjugation ofa GDV to a targeting element via primary amines present on the proteins ofthe GDV and the targeting element. A protein concentration equivalent of 0.1 to 0.5 mg ofthe GDV in PBS is incubated with the targeting element having a concentration of 5 to 10 nM in PBS in a total volume of 100 μL for 1.0 hour at 4°C. To this mixture, DSS solution (DSS dissolved in dry DMSO to a 10-25 mM concentration) is added to a final concentration of 1 to 2 mM and allowed to react for 30 minutes to 2 hours. Following incubation a stop solution (1.0 M Tris, pH 7.5) is added to a final concentration of 10 to 20 mM and the reaction mixture is incubated for 15 minutes. The targeting element-GDV may be desalted by column chromatography.
F. Conjugation of MSH to GDV Utilizing a Carbohydrate Linker
Incubate 0.1 to 0.5 mg of melanocyte stimulating hormone (Chiron Mimotopes, San Diego, CA) in 5 to 10 mM glucosamine (Sigma, St. Louis, MO) in a total volume of 100 μL for 1.0 hours at 4°C. DSS solution (DSS dissolved in dry DMSO to this mixture to a 10-25 mM concentration) is added to a final concentration of 1 to 2 mM and incubated for 30 minutes to 2 hours. Following incubation a stop solution (1.0 M Tris, pH 7.5) is added to a final concentration of 10 to 20 M and the reaction mixture is incubated for 15 minutes. The MSH-glucose conjugate is added to a cold solution of sodium wetα-periodate containing 100 mM sodium periodate in 0.1 M sodium acetate buffer, pH 5.5. The oxidation reaction is allowed to proceed for 1.0 hour in the dark at room temperature. Glycerol is added and the mixture is dialyzed at 4°C overnight and then concentrated.
G. Coupling IgG to Carboxylated PE Liposome Suspensions
A liposomal suspension (1.5 μmole) is mixed with l-ethyl-3-(3- dimethylaminopropyl)-carbodiimide (EDC; 4 mg, Pierce Chemical Co., Rockford, IL) in 1.5 mL of 10 mM NaPO4, 0.15 M NaCl, pH 5.0. The reaction is carried out at room temperature for one hour.
The liposome/EDC mixture (1.5 mL) is mixed with 75 μL of mouse IgG (Cappel
Labs, Malvern, PA; 10 mg/mL) and 75 μL of 1 M NaCl, and the coupling-reaction mixture adjusted to pH 8.0. Each reaction is carried out overnight at 4°C. Unreacted protein is separated from liposome-conjugated protein by metrizamide density gradient centrifugation, according to a standard procedure. Control coupling reactions are performed by substituting buffer for EDC.
The amount of protein bound to the liposome is determined by the Lowry protein assay. The concentration of lipid is determined from I '25 radioactivity levels, based on a known amount of PE-I^5 included in the liposome preparations. Based on the measured protein and lipid concentrations, the protein to lipid coupling ratios, expressed in micrograms protein/μmole, lipid concentrations are determined.
ASSAYS FOR GDV I IPTAKE AND FUNCTIONAL GENE EXPRESSION
A. Assay for GDV Uptake
Human hepatoma cell lines HepG2 (Schwartz, et al , J. Biol. Chem. 256:8878, 1981 ) and SK Hep 1, and rat hepatoma cell line Morris 7777 (ATCC CRL 1601, Wu et. al, J. Biol. Chem. 263:4719, 1988) and murine fibroblast cell line NIH3T3 (ATCC CRL 1658,
Goud et al, Vir. 763:251, 1988) are plated at a density of 0.5 to 2.0 x 105 cells/mL in 60 mm plastic dishes (Falcon Scientific Co., Lincoln Park, NJ). Equal amounts (16.7 μg of RNA, 0.5 mg of viral protein) of modified and unmodified GDV in Dulbecco's modified Eagle's medium are added to the culture medium and exposed to cells for 5 days at 37°C under 5% CO2- Cells are assayed for b-galactosidase activity as a measure of foreign gene expression according to the method of Gorman (DNA Cloning 2:157-158, 1986, Glover, D.M., ed., IRL Press, Washington, DC). In brief, cell monolayers (approximately 1.0 x 10^ cells/60 mm dish) are washed with phosphate-buffered saline, then lysed. The lysate, 0.1 mL, is reacted with o-nitrophenyl galactopyranoside (Sigma, St. Louis, MO) and b- galactosidase activity quantitated by absorbance at 420 nm after the addition of Na2CO3 to terminate the reaction.
B. Histochemical Staining to Demonstrate b-Galactosidase Activity
To determine the fraction of cells that expressed the b-galactosidase gene after exposure to targeted GDV samples, histochemical staining of in situ b-galactosidase activity is performed according to the method of Sanes, et al . (EMBOJ. 5:3133, 1986). In brief, cultured cells in 35 mm dishes containing 0.5 to 1.0 x 10^ cells are treated for 5 days with equal amounts (8.4 μg of viral RNA, 0.3 mg of viral protein) of modified or unmodified virus. Cells are fixed in 0.5% glutaraldehyde (Sigma, St. Louis, MO), phosphate-buffered saline, then incubated with 1.0 mM MgCl2 phosphate-buffered saline, and overlaid with 1.0 mg/mL X-gal (GIBCO, Bethesda Research Laboratories, MD), 5 mM potassium ferricyanide, 5 mM potassium ferrocyanide, and 2 mM MgCl2 in phosphate-buffered saline. After incubation at 37°C for 1 hour, the dishes are washed in phosphate-buffered saline to quench the reaction and evaluated by counting positive (blue) cells under a light microscope, and the results are expressed as the percent of positive 10 high power fields.
C. Assays for Cellular Uptake of GDV
To determine whether the targeted GDV according to the invention is taken up by cells, the cells may be incubated at 37°C in serum-free Dulbecco's modified Eagle's medium containing 3 s-biolabeled, modified GDV, 3.3 μg of viral RNA (98 μg of viral protein) (Watanabe, et al, Cancer Immunol. Immunother. 25:157, 1989) with a specific activity of 6.1 x 10^ cpm/mg of nucleic acid. At various times, medium is removed, and cells are chilled to 4°C and washed with ice-cold minimum essential medium containing 1.0 mg/mL bovine serum albumin. Surface-bound radioactivity is stripped with 0.5 mL of cold phosphate-buffered saline, pH 7.2, containing 0.4% trypsin, 0.02% EDTA, and separated from cells by centrifugation. The cell pellet is solubilized in 0.2 N NaOH and Poly-Fluor (Packard Instrument Co.), and trypsin-EDTA-resistant (internalized) radioactivity is measured by scintillation counting (Tr-Carb 4530, Packard) (Schwartz, et al, J. Biol. Chem. 256:8878, 1981). Nonspecific uptake is measured in the presence of a 100-fold molar excess of targeting element, and specific uptake is calculated as the difference between total and nonspecific measurements.
D. Stability of Modified GDV
To assess the stability ofthe modified GDV, samples of freshly prepared sterile, GDV conjugated to the desired targeting element are incubated in serum-free Dulbecco's modified Eagle's medium at 4 and 25°C. At various times, samples are added to the medium of target cells and incubated for 5 days. Cells are then assayed for b-galactosidase activity by colorimetric assay as described above.
E. Determination of Protein Expression bv ELISA Cell lysates from cells transduced by SK+HBe-c are made by washing 1.0 x 107 cultured cells with PBS, resuspending the cells in a total volume of 600 ml on PBS, and sonicating for two 5-second periods at a setting of 30 in a Branson sonicator, Model 350, (Fisher, Pittsburgh, PA) or by freeze thawing three times. Lysates are clarified by centrifugation at 10,000 φm for 5 minutes. Core antigen and precore antigen in cell lysates and secreted e antigen in culture supernatant are assayed using the Abbott HBe, rDNA EIA kit (Abbott Laboratories Diagnostic Division, Chicago, IL). Another sensitive EIA assay for precore antigen in cell lysates and secreted e antigen in culture supernatant is performed using the Incstar ETI-EB kit, (Incstar Coφoration, Stillwater, MN). A standard curve is generated from dilutions of recombinant hepatitis B core and e antigen obtained from Biogen (Geneva, Switzerland). Using these procedures, approximately 20-40 ng/ml HBV e antigen is expressed in transduced cell lines, and 38-750 ng/ml of HBV core antigen is expressed in transduced cell lines. Alternatively, protein expression may be determined by Western blot or by Immunoprecipitation Western blot. See U.S.S.N. 08/483,51 1, filed June 7, 1995.
F. Determination of Protein Expression bv Luminescence
When the vector expresses the luciferase marker, expression may be assayed by exposing the sample to luciferin and measuring the resulting luminescence. Briefly, transfected cells are harvested, washed in PBS and resuspended in 200 mL of 0.25 M Tris- HCl, pH 7.8. The cells are lysed by three cycles of freeze/thawing and the cellular debris is removed by centrifugation. Approximately 50 mL of cell lysate is assayed for luciferase activity by measuring light emission with a bioluminometer (Analytical Bioluminescence, San Diego, CA) in the presence of luciferin and ATP (Brasier et al, Biotechniques 7:11 16, 1989). The amount of protein in the lysate is determined by the Bradford dye-binding procedure (Bio-Rad, Hercules, CA).
Example 3 ADMINISTRATION PROTOCOLS
A. Administration to Animals Other than Humans
Targeted GDV preparations made in accordance with the teachings provided herein are injected into an animal at doses of 105, IO6, IO7, 108, IO9, IO10, or 101 ] GDVs with or without uptake enhancers such as polybrene (1-8 μg/mL) or DEAE dextran (2 - 30 μg/mL).
Injections are given daily for 1, 2, 3, 4, 5, 6, or 7 days, and 2 to 7 days after the last injection, to determine the activity ofthe delivered gene. Injections are typically administered through an I.V.
B. Administration to Humans
Patients preferably receive doses of about 106, IO7, IO8, IO9, 1010, or 10* l targeted GDVs I.V., intra-arterially, in the local vasculature or peritumorally, as the case may be, in a volume of 0.1 to 3 mL. If the gene is one that encodes a protein which converts a non-toxic precursor (prodrug) into a toxic product , the prodrug is administered at doses defined in the Physicians Desk Reference or those predicted from animal experiments at times of between 1 to 30 days after the last administration of the targeted GDV.
The targeted GDV is typically administered from 1 to 20 times al intervals of 1 to 15 days and the patient status is monitored by following normal clinical parameters and monitoring tumor sizes by radiography, MRl scans, PET scans or other conventional means.
While the present invention has been described above both generally and in terms of preferred embodiments, it is understood that variations and modifications will occur to those skilled in the art in light ofthe description, supra. Therefore, it is intended that the appended claims cover all such variations coming within the scope ofthe invention as claimed.
Additionally, the publications and other materials cited to illuminate the background ofthe invention, and in particular, to provide additional details concerning its practice as described in the detailed description and examples, are hereby incoφorated by reference in their entirety.

Claims

In the Claims:
1. A gene delivery vehicle to which a targeting element is covalently bound by a linking agent wherein the targeting element is capable of interacting with a molecule present on the surface of a target cell.
2. A gene delivery vehicle according to claim 1 , wherein the linking agent is selected from the group consisting of a homobifunctional linking agent, a heterobifunctional linking agent, and a trifunctional linking agent.
3. A gene delivery vehicle according to claim 2, wherein the linking agent is selected from the group consisting of 4(4-N-maleimidophenyl)butyric acid hydride»HCl»l/2 dioxane (MPBH), succinimidyl 4-(N-maleimidomethyl)cyclohexane-l -carboxylate (SMCC), sulfosuccinimidyl (4(azidosalicylamido)hexanoate (Sulfo-NHS-LC-ASA), sulfosuccinimidyl -2- [6-(biotinamido) -2- (p-azidobenzamido)-hexanoamido] ethyl-1,3'- dithiopropionate (Sulfo-SBED), and disuccinimidyl suberate (DSS), N-succinimidyl-3-(2- pyridyldithio) - propionate (SPDP)), sulfo - succinimidyl 4 - (N-maleimidomethyl) cyclohexane - 1 - carboxylate (Sulfo-SMCC), 1 - ethyl - 3 - (3-dimethylaminopropyl)- carbodiimide hydrochloride (EDC), and bis-diazobenzidine (BDB).
4. A gene delivery vehicle according to claim 1 , wherein the linking agent comprises a carbohydrate linking agent.
5. A gene delivery vehicle according to claim 4, wherein the carbohydrate of the carbohydrate linking agent is selected from the group consisting of a monosaccharide, a disaccharide, and an oligosaccharide.
6. A gene delivery vehicle according to claim 5, wherein the carbohydrate of the carbohydrate linking agent is a monosaccharide linking agent selected from the group consisting of fructosamine, glucosamine, galactosamine, and mannosamine.
7. A gene delivery vehicle according to claim 5, wherein the carbohydrate of the carbohydrate linking agent is a disaccharide linking agent selected from the group consisting of aminated sucrose, aminated maltose, aminated trehalose, and aminated lactose, or a oligosaccharide linking agent selected from the group consisting of N-acetyl-D- glucosamine, N-acetyl-D-galactosamine, aminated N-acetylmuramic acid, and aminated N- acetyl-D-neuraminic acid.
8. A target cell transduced with a gene delivery vehicle according to claims 1-7.
9. A pharmaceutical composition comprising a gene delivery vehicle according to claima 1-7 in a pharmaceutically acceptable carrier.
10. A method of preparing a gene delivery vehicle according to claims 1-7 comprising mixing a gene delivery vehicle and a targeting element in the presence of a linking agent under conditions where the linking agent becomes covalently linked to both the gene delivery vehicle and targeting element.
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