WO2004097585A3 - System and method for internet-accessible tools and knowledge base for protocol design, metadata capture and laboratory experiment management - Google Patents

System and method for internet-accessible tools and knowledge base for protocol design, metadata capture and laboratory experiment management Download PDF

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Publication number
WO2004097585A3
WO2004097585A3 PCT/US2004/013188 US2004013188W WO2004097585A3 WO 2004097585 A3 WO2004097585 A3 WO 2004097585A3 US 2004013188 W US2004013188 W US 2004013188W WO 2004097585 A3 WO2004097585 A3 WO 2004097585A3
Authority
WO
WIPO (PCT)
Prior art keywords
knowledge base
experiment
internet
laboratory
laboratory experiment
Prior art date
Application number
PCT/US2004/013188
Other languages
French (fr)
Other versions
WO2004097585A2 (en
Inventor
Leonore A Herzenberg
Stephen Meehan
Wayne Moore
David Parks
James Tung
Mark Musen
Original Assignee
Univ Stanford
Leonore A Herzenberg
Stephen Meehan
Wayne Moore
David Parks
James Tung
Mark Musen
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Univ Stanford, Leonore A Herzenberg, Stephen Meehan, Wayne Moore, David Parks, James Tung, Mark Musen filed Critical Univ Stanford
Publication of WO2004097585A2 publication Critical patent/WO2004097585A2/en
Publication of WO2004097585A3 publication Critical patent/WO2004097585A3/en

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Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/10—Ontologies; Annotations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/20—Heterogeneous data integration

Abstract

The present invention is related to databases and the exchange of scientific information. Specifically the invention discloses a laboratory data management system including a knowledge base that stores characteristics of laboratory reagents (2101), experiment subjects, tissues and cells. The invention also includes an experiment input module that accepts input of parameters of an experiment and data from a knowledge base module. Further, the invention includes a protocol creator connected to the knowledge base module and the experiment input module that creates a laboratory protocol for an experiment based on data supplied from the knowledge base module and the experiment input module. The invention also includes methods to use the described system.
PCT/US2004/013188 2003-04-24 2004-04-26 System and method for internet-accessible tools and knowledge base for protocol design, metadata capture and laboratory experiment management WO2004097585A2 (en)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US46584003P 2003-04-24 2003-04-24
US60/465,840 2003-04-24
US52650903P 2003-12-02 2003-12-02
US60/526,509 2003-12-02

Publications (2)

Publication Number Publication Date
WO2004097585A2 WO2004097585A2 (en) 2004-11-11
WO2004097585A3 true WO2004097585A3 (en) 2006-06-22

Family

ID=33423581

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2004/013188 WO2004097585A2 (en) 2003-04-24 2004-04-26 System and method for internet-accessible tools and knowledge base for protocol design, metadata capture and laboratory experiment management

Country Status (1)

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WO (1) WO2004097585A2 (en)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN106233239B (en) * 2014-03-03 2019-06-25 生命技术公司 For transmitting the graphic user interface system and method for data acquisition and analysis setting
CN111260339A (en) * 2020-03-06 2020-06-09 福州数据技术研究院有限公司 Method for collaborative construction and audit of professional knowledge system based on block chain
CN115934654A (en) * 2023-02-03 2023-04-07 北京联合伟世科技股份有限公司 Packing method, device and equipment of experimental resources and storage medium

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US6003039A (en) * 1997-06-27 1999-12-14 Platinum Technology, Inc. Data repository with user accessible and modifiable reuse criteria
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US20010032210A1 (en) * 2000-01-31 2001-10-18 Frank Gregory Daniel Method and apparatus for research management
US20010039014A1 (en) * 2000-01-11 2001-11-08 Maxygen, Inc. Integrated systems and methods for diversity generation and screening
US20010044134A1 (en) * 1999-12-08 2001-11-22 Sheppard Paul O. Novel secreted polypeptide zsig87
US20020012905A1 (en) * 2000-06-14 2002-01-31 Snodgrass H. Ralph Toxicity typing using liver stem cells
US6374260B1 (en) * 1996-05-24 2002-04-16 Magnifi, Inc. Method and apparatus for uploading, indexing, analyzing, and searching media content
US20020083034A1 (en) * 2000-02-14 2002-06-27 Julian Orbanes Method and apparatus for extracting data objects and locating them in virtual space
US6470277B1 (en) * 1999-07-30 2002-10-22 Agy Therapeutics, Inc. Techniques for facilitating identification of candidate genes
US20020177138A1 (en) * 2000-11-15 2002-11-28 The United States Of America , Represented By The Secretary, Department Of Health And Human Services Methods for the indentification of textual and physical structured query fragments for the analysis of textual and biopolymer information
US20020194154A1 (en) * 2001-06-05 2002-12-19 Levy Joshua Lerner Systems, methods and computer program products for integrating biological/chemical databases using aliases

Patent Citations (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5379422A (en) * 1992-01-16 1995-01-03 Digital Equipment Corporation Simple random sampling on pseudo-ranked hierarchical data structures in a data processing system
US6108635A (en) * 1996-05-22 2000-08-22 Interleukin Genetics, Inc. Integrated disease information system
US6374260B1 (en) * 1996-05-24 2002-04-16 Magnifi, Inc. Method and apparatus for uploading, indexing, analyzing, and searching media content
US6003039A (en) * 1997-06-27 1999-12-14 Platinum Technology, Inc. Data repository with user accessible and modifiable reuse criteria
US6470277B1 (en) * 1999-07-30 2002-10-22 Agy Therapeutics, Inc. Techniques for facilitating identification of candidate genes
US20010044134A1 (en) * 1999-12-08 2001-11-22 Sheppard Paul O. Novel secreted polypeptide zsig87
US20010039014A1 (en) * 2000-01-11 2001-11-08 Maxygen, Inc. Integrated systems and methods for diversity generation and screening
US20010032210A1 (en) * 2000-01-31 2001-10-18 Frank Gregory Daniel Method and apparatus for research management
US20020083034A1 (en) * 2000-02-14 2002-06-27 Julian Orbanes Method and apparatus for extracting data objects and locating them in virtual space
US20020012905A1 (en) * 2000-06-14 2002-01-31 Snodgrass H. Ralph Toxicity typing using liver stem cells
US20020177138A1 (en) * 2000-11-15 2002-11-28 The United States Of America , Represented By The Secretary, Department Of Health And Human Services Methods for the indentification of textual and physical structured query fragments for the analysis of textual and biopolymer information
US20020194154A1 (en) * 2001-06-05 2002-12-19 Levy Joshua Lerner Systems, methods and computer program products for integrating biological/chemical databases using aliases

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
MUSEN M.A. ET AL: "Architecture for intelligent systems based on reusable components", ARTIFICIAL INTELLIGENCE IN MEDICINE, vol. 7, 1995, pages 189 - 199 *

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