WO2007023461A3 - Method for detection of micro-organisms and antibiotic resistance markers and nucleic acid oligonucleotides therefor - Google Patents
Method for detection of micro-organisms and antibiotic resistance markers and nucleic acid oligonucleotides therefor Download PDFInfo
- Publication number
- WO2007023461A3 WO2007023461A3 PCT/IB2006/052919 IB2006052919W WO2007023461A3 WO 2007023461 A3 WO2007023461 A3 WO 2007023461A3 IB 2006052919 W IB2006052919 W IB 2006052919W WO 2007023461 A3 WO2007023461 A3 WO 2007023461A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- organisms
- micro
- nucleic acid
- antibiotic resistance
- detection
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/16—Primer sets for multiplex assays
Abstract
The present invention relates to methods of detecting one or more micro¬ organisms and/or one or more antibiotic resistance markers in a sample, comprising identifying the presence of distinct nucleic acid regions. Primers and probes suitable for use in such methods are provided.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
JP2008527574A JP2009505651A (en) | 2005-08-26 | 2006-08-23 | Method for detection of microbial and antibiotic resistance markers and nucleic acid oligonucleotides therefor |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
EP05107867.3 | 2005-08-26 | ||
EP05107867 | 2005-08-26 |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2007023461A2 WO2007023461A2 (en) | 2007-03-01 |
WO2007023461A3 true WO2007023461A3 (en) | 2008-01-03 |
Family
ID=37772009
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/IB2006/052919 WO2007023461A2 (en) | 2005-08-26 | 2006-08-23 | Method for detection of micro-organisms and antibiotic resistance markers and nucleic acid oligonucleotides therefor |
Country Status (3)
Country | Link |
---|---|
JP (1) | JP2009505651A (en) |
CN (1) | CN101248190A (en) |
WO (1) | WO2007023461A2 (en) |
Cited By (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US8883423B2 (en) | 2010-10-22 | 2014-11-11 | T2 Biosystems, Inc. | NMR systems and methods for the rapid detection of analytes |
Families Citing this family (27)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CA2348042A1 (en) | 2001-06-04 | 2002-12-04 | Ann Huletsky | Sequences for detection and identification of methicillin-resistant staphylococcus aureus |
US11834720B2 (en) | 2005-10-11 | 2023-12-05 | Geneohm Sciences, Inc. | Sequences for detection and identification of methicillin-resistant Staphylococcus aureus (MRSA) of MREJ types xi to xx |
WO2008051285A2 (en) | 2006-04-01 | 2008-05-02 | Medical Service Consultation International, Llc | Methods and compositions for detecting fungi and mycotoxins |
EP1978111B1 (en) | 2007-04-02 | 2013-03-27 | Gen-Probe Incorporated | Compositions, kits and related methods for the detection and/or monitoring of Pseudomonas aeruginosa |
EP2150625B1 (en) | 2007-04-19 | 2013-03-20 | Molecular Detection Inc. | Methods, compositions and kits for detection and analysis of antibiotic-resistant bacteria |
ATE525483T1 (en) * | 2007-07-30 | 2011-10-15 | Univ Ulm | OLIGONUCLEOTIDE PROBE AND METHOD FOR DETECTING OR DISTINCTING MICROORGANISMS IN A SAMPLE |
WO2009086218A2 (en) * | 2007-12-21 | 2009-07-09 | Gen-Probe Incorporated | Detection of antibiotic-resistant microorganisms |
US7595164B2 (en) | 2007-12-26 | 2009-09-29 | Gen-Probe Incorporated | Compositions and methods to detect Candida albicans nucleic acid |
AU2012202811B2 (en) * | 2007-12-26 | 2014-02-13 | Gen-Probe Incorporated | Compositions and methods to detect Candida albicans nucleic acid |
FI121884B (en) | 2008-01-17 | 2011-05-31 | Mobidiag Oy | Method for detection and identification of methicillin-resistant staphylococci, probe and test kit for the method |
US20100068718A1 (en) | 2008-08-22 | 2010-03-18 | Hooper Dennis G | Methods and Compositions for Identifying Yeast |
FI20095544A0 (en) * | 2009-05-15 | 2009-05-15 | Juha Kirveskari | Method and kit for identifying antibiotic resistant bacteria |
EP2473639A2 (en) * | 2009-09-04 | 2012-07-11 | Intelligent Medical Devices, Inc. | OPTIMIZED PROBES AND PRIMERS AND METHODS OF USING SAME FOR THE DETECTION, SCREENING, ISOLATION AND SEQUENCING OF MRSA, MSSA, STAPHYLOCOCCUS MARKERS AND THE ANTIBIOTIC RESISTANCE GENE mecA |
EP2473630B1 (en) * | 2009-09-04 | 2017-11-08 | QIAGEN GmbH | Optimized probes and primers and methods of using same for the detection, screening, isolation and sequencing of vancomycin resistance genes and vancomycin resistant enterococci |
US8962251B2 (en) | 2009-10-08 | 2015-02-24 | Medical Service Consultation International, Llc | Methods and compositions for identifying sulfur and iron modifying bacteria |
CN101880728B (en) * | 2010-07-29 | 2012-03-21 | 河南农业大学 | Multiple PCR detection primer of enterococcus and method thereof |
EP2630517B1 (en) | 2010-10-22 | 2016-03-16 | T2 Biosystems, Inc. | Nmr systems and methods for the rapid detection of analytes |
EP2839038B1 (en) | 2012-04-20 | 2019-01-16 | T2 Biosystems, Inc. | Compositions and methods for detection of candida species |
CN102952881B (en) * | 2012-10-25 | 2014-02-26 | 浙江省淡水水产研究所 | Enterobacter cloacae specific PCR (polymerase chain reaction) detection primer |
US8956821B2 (en) | 2013-02-06 | 2015-02-17 | Medical Service Consultation International, Llc | Methods and compositions for detecting Aspergillus terreus, Aspergillus niger, and mycotoxins |
WO2017044880A1 (en) | 2015-09-09 | 2017-03-16 | uBiome, Inc. | Method and system for microbiome-derived diagnostics and therapeutics infectious disease and other health conditions associated with antibiotic usage |
US11519016B2 (en) | 2016-01-21 | 2022-12-06 | T2 Biosystems, Inc. | NMR methods and systems for the rapid detection of bacteria |
US9889165B2 (en) | 2016-04-21 | 2018-02-13 | Naked Biome, Inc. | Compositions and methods for treatment of skin disorders |
EP3472355A4 (en) | 2016-06-15 | 2020-07-29 | Genecapture, Inc. | Compositions, methods and devices comprising stem-loop captor molecules |
WO2019079612A1 (en) * | 2017-10-20 | 2019-04-25 | Naked Biome, Inc. | Systems and methods for bacterial detection and treatment |
EP3599283A1 (en) * | 2018-07-25 | 2020-01-29 | Blue DNA Companion | Method for assessing fecal pollution in water |
CN113502354A (en) * | 2021-07-14 | 2021-10-15 | 中国医学科学院输血研究所 | Pathogen detection primer and probe set for transplanted patient infection, kit and application |
Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2000052203A2 (en) * | 1999-03-02 | 2000-09-08 | King's College London | Identification of bacteria by amplification and probing |
US6512105B1 (en) * | 1986-11-24 | 2003-01-28 | Gen-Probe Incorporated | Methods for making oligonucleotide probes for the detection and/or quantitation of non-viral organisms |
US20050079490A1 (en) * | 1999-12-23 | 2005-04-14 | Roche Diagnostics Corporation | Method for quickly detecting microbial dna/rna, kit therefor and the use of said method |
-
2006
- 2006-08-23 WO PCT/IB2006/052919 patent/WO2007023461A2/en active Application Filing
- 2006-08-23 JP JP2008527574A patent/JP2009505651A/en not_active Withdrawn
- 2006-08-23 CN CNA2006800308872A patent/CN101248190A/en active Pending
Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6512105B1 (en) * | 1986-11-24 | 2003-01-28 | Gen-Probe Incorporated | Methods for making oligonucleotide probes for the detection and/or quantitation of non-viral organisms |
WO2000052203A2 (en) * | 1999-03-02 | 2000-09-08 | King's College London | Identification of bacteria by amplification and probing |
US20050079490A1 (en) * | 1999-12-23 | 2005-04-14 | Roche Diagnostics Corporation | Method for quickly detecting microbial dna/rna, kit therefor and the use of said method |
Non-Patent Citations (2)
Title |
---|
DE VRIES JOHANN ET AL: "Spread of recombinant DNA by roots and pollen of transgenic potato plants, identified by highly specific biomonitoring using natural transformation of an Acinetobacter sp.", APPLIED AND ENVIRONMENTAL MICROBIOLOGY AUG 2003, vol. 69, no. 8, August 2003 (2003-08-01), pages 4455 - 4462, XP002445290, ISSN: 0099-2240 * |
MITTERER G ET AL: "Microarray-based identification of bacteria in clinical samples by solid-phase PCR amplification of 23S ribosomal DNA sequences", JOURNAL OF CLINICAL MICROBIOLOGY, WASHINGTON, DC, US, vol. 42, no. 3, March 2004 (2004-03-01), pages 1048 - 1057, XP002363929, ISSN: 0095-1137 * |
Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US8883423B2 (en) | 2010-10-22 | 2014-11-11 | T2 Biosystems, Inc. | NMR systems and methods for the rapid detection of analytes |
US9360457B2 (en) | 2010-10-22 | 2016-06-07 | T2 Biosystems, Inc. | NMR systems and methods for the rapid detection of analytes |
Also Published As
Publication number | Publication date |
---|---|
CN101248190A (en) | 2008-08-20 |
JP2009505651A (en) | 2009-02-12 |
WO2007023461A2 (en) | 2007-03-01 |
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